Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0068600 Rhododendron simsii HOM05D006202 ORTHO05D008227 7.0e-245 850.1 412 100.0
CSS0029964 Camellia sinensis var. sinensis HOM05D006202 ORTHO05D008227 5.8e-199 697.6 395 87.1
Dinv43939 Davidia involucrata HOM05D006202 ORTHO05D008227 7.8e-196 687.2 404 82.7
Actinidia21584 Actinidia chinensis HOM05D006202 ORTHO05D008227 3.3e-194 681.8 396 84.6
vmacro21164 Vaccinium macrocarpon HOM05D006202 ORTHO05D008227 3.4e-191 671.8 364 90.9
TAR369G0651 Trochodendron aralioides HOM05D006202 ORTHO05D008227 6.2e-185 651.0 400 80.0
QL04p001552 Quercus lobata HOM05D006202 ORTHO05D008227 1.1e-184 650.2 393 79.1
Cfa010710 Carpinus fangiana HOM05D006202 ORTHO05D008227 1.4e-184 649.8 394 81.0
Potri.009G024100 Populus trichocarpa HOM05D006202 ORTHO05D008227 9.9e-183 643.7 406 77.8
Cc02_g26930 Coffea canephora HOM05D006202 ORTHO05D008227 8.4e-182 640.6 393 79.6
Cpa.g.sc189.4 Carica papaya HOM05D006202 ORTHO05D008227 1.4e-181 639.8 395 79.0
Nitab4.5_0000468g0040 Nicotiana tabacum HOM05D006202 ORTHO05D008227 4.2e-181 638.3 382 80.1
Lj9C620G10 Lonicera japonica HOM05D006202 ORTHO05D008227 5.4e-181 637.9 364 84.9
Haze_03268 Corylus avellana HOM05D006202 ORTHO05D008227 1.2e-180 636.7 406 78.8
Oeu060701.1 Olea europaea HOM05D006202 ORTHO05D008227 2.1e-180 636.0 383 81.7
Nitab4.5_0010722g0010 Nicotiana tabacum HOM05D006202 ORTHO05D008227 4.6e-180 634.8 382 80.1
Lalb_Chr01g0015151 Lupinus albus HOM05D006202 ORTHO05D008227 6.0e-180 634.4 394 77.9
TWI73G0821 Tripterygium wilfordii HOM05D006202 ORTHO05D008227 1.0e-179 633.6 383 78.6
Manes.10G152100 Manihot esculenta HOM05D006202 ORTHO05D008227 1.8e-179 632.9 403 77.7
MSTRG.28100 Avicennia marina HOM05D006202 ORTHO05D008227 5.1e-179 631.3 383 79.6
Sopen01g033340 Solanum pennellii HOM05D006202 ORTHO05D008227 5.1e-179 631.3 382 78.8
Lj3g0005275 Lotus japonicus HOM05D006202 ORTHO05D008227 6.7e-179 630.9 394 78.4
Migut.I00539 Erythranthe guttata HOM05D006202 ORTHO05D008227 8.7e-179 630.6 402 77.4
Glyma.15G268400 Glycine max HOM05D006202 ORTHO05D008227 1.5e-178 629.8 395 77.0
Glyma.08G157800 Glycine max HOM05D006202 ORTHO05D008227 2.5e-178 629.0 395 77.5
Prupe.1G561800 Prunus persica HOM05D006202 ORTHO05D008227 3.3e-178 628.6 383 79.4
CAN.G129.48 Capsicum annuum HOM05D006202 ORTHO05D008227 6.2e-177 624.4 382 78.8
SGA_v2.0_scaffold5G03106 Striga asiatica HOM05D006202 ORTHO05D008227 6.2e-177 624.4 393 77.9
ECA234G4350 Erigeron canadensis HOM05D006202 ORTHO05D008227 8.1e-177 624.0 407 75.2
RcHm_v2.0_Chr1g0313251 Rosa chinensis HOM05D006202 ORTHO05D008227 1.1e-176 623.6 363 82.4
Solyc01g073730.4 Solanum lycopersicum HOM05D006202 ORTHO05D008227 1.1e-176 623.6 382 78.0
VMungo1080G0924 Vigna mungo HOM05D006202 ORTHO05D008227 1.8e-176 622.9 387 77.8
GSVIVG01001357001 Vitis vinifera HOM05D006202 ORTHO05D008227 1.8e-176 622.9 429 73.4
MD02G1319400 Malus domestica HOM05D006202 ORTHO05D008227 2.4e-176 622.5 393 78.1
CiPaw.02G012300 Carya illinoinensis HOM05D006202 ORTHO05D008227 4.0e-176 621.7 394 78.7
Lsat_1_v5_gn_4_46560 Lactuca sativa HOM05D006202 ORTHO05D008227 4.0e-176 621.7 408 75.0
Nn2g15679 Nelumbo nucifera HOM05D006202 ORTHO05D008227 6.9e-176 620.9 388 77.8
arahy.Tifrunner.gnm1.ann1.03K86Q Arachis hypogaea HOM05D006202 ORTHO05D008227 2.6e-175 619.0 394 75.4
Migut.B01400 Erythranthe guttata HOM05D006202 ORTHO05D008227 4.5e-175 618.2 372 80.9
Peaxi162Scf00402g00616 Petunia axillaris HOM05D006202 ORTHO05D008227 4.5e-175 618.2 382 78.8
PGSC0003DMG401028974 Solanum tuberosum HOM05D006202 ORTHO05D008227 4.5e-175 618.2 364 81.0
Phvul.005G042000 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 5.8e-175 617.8 387 77.5
Sabra09G0015400 Salix brachista HOM05D006202 ORTHO05D008227 1.0e-174 617.1 430 72.1
arahy.Tifrunner.gnm1.ann1.Y9YBLC Arachis hypogaea HOM05D006202 ORTHO05D008227 1.3e-174 616.7 382 77.2
THA.LOC104815880 Tarenaya hassleriana HOM05D006202 ORTHO05D008227 1.3e-174 616.7 370 81.1
Aqoxy1G00030 Aquilegia oxysepala HOM05D006202 ORTHO05D008227 1.7e-174 616.3 368 82.1
SalBow5G5675 Salvia bowleyana HOM05D006202 ORTHO05D008227 2.2e-174 615.9 393 77.1
TPR.G16148 Trifolium pratense HOM05D006202 ORTHO05D008227 2.2e-174 615.9 394 76.4
ClCG09G003710 Citrullus lanatus HOM05D006202 ORTHO05D008227 3.8e-174 615.1 388 78.4
Sed0014986 Sechium edule HOM05D006202 ORTHO05D008227 8.4e-174 614.0 388 77.8
Atru.chr11.2704 Acer truncatum HOM05D006202 ORTHO05D008227 1.1e-173 613.6 402 75.4
Medtr2g061710 Medicago truncatula HOM05D006202 ORTHO05D008227 1.4e-173 613.2 394 76.6
HanXRQChr16g0520351 Helianthus annuus HOM05D006202 ORTHO05D008227 7.1e-173 610.9 394 75.9
arahy.Tifrunner.gnm1.ann1.YK6119 Arachis hypogaea HOM05D006202 ORTHO05D008227 2.1e-172 609.4 394 74.6
MBI04_g33961_MAGBIO Magnolia biondii HOM05D006202 ORTHO05D008227 2.7e-172 609.0 412 74.0
Ca_03201_v3 Cicer arietinum L. HOM05D006202 ORTHO05D008227 4.6e-172 608.2 390 76.9
Aa31LG5G5070 Aethionema arabicum HOM05D006202 ORTHO05D008227 3.9e-171 605.1 365 79.5
Sc10g0005310 Simmondsia chinensis HOM05D006202 ORTHO05D008227 3.9e-171 605.1 371 79.8
FAN04G1730 Fragaria x ananassa HOM05D006202 ORTHO05D008227 8.7e-171 604.0 361 81.4
FvH4_5g30330 Fragaria vesca HOM05D006202 ORTHO05D008227 3.3e-170 602.1 361 81.4
PSO384G0467 Papaver somniferum HOM05D006202 ORTHO05D008227 7.4e-170 600.9 382 77.5
FAN18G2168 Fragaria x ananassa HOM05D006202 ORTHO05D008227 1.3e-169 600.1 361 81.2
DCAR_001807 Daucus carota HOM05D006202 ORTHO05D008227 1.6e-169 599.7 364 79.4
AUR62036652 Chenopodium quinoa HOM05D006202 ORTHO05D008227 2.8e-169 599.0 388 74.2
AUR62034625 Chenopodium quinoa HOM05D006202 ORTHO05D008227 8.2e-169 597.4 388 74.0
Carub.0004s1327 Capsella rubella HOM05D006202 ORTHO05D008227 1.4e-168 596.7 376 76.9
unitig_749.g13486 Utricularia gibba HOM05D006202 ORTHO05D008227 1.4e-168 596.7 373 77.2
FAN08G1924 Fragaria x ananassa HOM05D006202 ORTHO05D008227 1.8e-168 596.3 361 80.3
Ah.14g085700 Amaranthus hybridus HOM05D006202 ORTHO05D008227 3.1e-168 595.5 388 74.5
FAN13G0191 Fragaria x ananassa HOM05D006202 ORTHO05D008227 3.1e-168 595.5 361 80.6
Eucgr.A00275 Eucalyptus grandis HOM05D006202 ORTHO05D008227 9.0e-168 594.0 361 79.5
PSO339G0702 Papaver somniferum HOM05D006202 ORTHO05D008227 9.0e-168 594.0 382 76.4
Eucgr.A00079 Eucalyptus grandis HOM05D006202 ORTHO05D008227 1.5e-167 593.2 369 78.6
BcaC01g05926 Brassica carinata HOM05D006202 ORTHO05D008227 3.4e-167 592.0 374 77.0
AL4G27290 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 4.5e-167 591.7 388 74.0
AT2G31955 Arabidopsis thaliana HOM05D006202 ORTHO05D008227 5.8e-167 591.3 379 75.5
ATR0605G327 Amborella trichopoda HOM05D006202 ORTHO05D008227 1.3e-166 590.1 367 78.5
Sp4g14320 Schrenkiella parvula HOM05D006202 ORTHO05D008227 1.3e-166 590.1 353 79.9
BolC3t14483H Brassica oleracea HOM05D006202 ORTHO05D008227 1.7e-166 589.7 374 76.7
Thecc.09G200100 Theobroma cacao HOM05D006202 ORTHO05D008227 1.7e-166 589.7 369 77.0
Phvul.005G041900 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 2.2e-166 589.3 343 82.2
BraA03t11059Z Brassica rapa HOM05D006202 ORTHO05D008227 5.0e-166 588.2 374 76.7
Duzib168G0949 Durio zibethinus HOM05D006202 ORTHO05D008227 6.5e-166 587.8 381 75.1
Thhalv10016791m.g Eutrema salsugineum HOM05D006202 ORTHO05D008227 8.4e-166 587.4 374 76.2
Ciclev10031726m.g Citrus clementina HOM05D006202 ORTHO05D008227 1.6e-164 583.2 366 77.3
Os12g0507000 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 2.1e-164 582.8 368 75.8
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 1.8e-163 579.7 369 76.2
CsaV3_7G031490 Cucumis sativus L. HOM05D006202 ORTHO05D008227 3.0e-163 578.9 335 83.3
Zm00001eb244230 Zea mays HOM05D006202 ORTHO05D008227 1.9e-162 576.2 362 76.8
EL10Ac3g06182 Beta vulgaris HOM05D006202 ORTHO05D008227 2.8e-161 572.4 404 70.0
Gohir.D08G018900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 1.4e-160 570.1 348 77.9
Gorai.004G013400 Gossypium raimondii HOM05D006202 ORTHO05D008227 1.4e-160 570.1 348 78.2
Os02g0258900 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 1.8e-160 569.7 366 74.9
Actinidia15848 Actinidia chinensis HOM05D006202 ORTHO05D008227 1.2e-159 567.0 391 75.2
Gohir.A08G008900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 1.5e-159 566.6 348 77.0
CANSAT80G0703 Cannabis sativa HOM05D006202 ORTHO05D008227 3.8e-158 562.0 369 74.5
HPP92_023784 Vanilla planifolia HOM05D006202 ORTHO05D008227 8.5e-158 560.8 363 74.7
A03p17940 Brassica napus HOM05D000200 ORTHO05D000262 1.4e-152 543.5 350 75.7
C03p21020 Brassica napus HOM05D000200 ORTHO05D000262 7.7e-151 537.7 347 75.2
SEGI_40145 Sequoiadendron giganteum HOM05D006202 ORTHO05D008227 4.8e-145 518.5 392 67.1
SMO361G0213 Selaginella moellendorffii HOM05D006202 ORTHO05D008227 3.1e-144 515.8 370 67.6
Mapoly0045s0149 Marchantia polymorpha HOM05D006202 ORTHO05D008227 2.9e-142 509.2 369 66.7
Pp3c5_22480 Physcomitrium patens HOM05D006202 ORTHO05D008227 1.5e-141 506.9 370 65.7
CDE06G1615 Ceratophyllum demersum HOM05D006202 ORTHO05D008227 2.5e-141 506.1 389 67.4
Potri.001G230604 Populus trichocarpa HOM05D006202 ORTHO05D008227 6.1e-140 501.5 405 64.2
arahy.Tifrunner.gnm1.ann1.JS3HL2 Arachis hypogaea HOM05D006202 ORTHO05D008227 4.8e-137 491.9 394 63.5
CBR_g36677 Chara braunii HOM05D006202 ORTHO05D008227 1.4e-136 490.3 349 67.0
TAR369G1105 Trochodendron aralioides HOM05D006202 ORTHO05D008227 2.9e-126 456.1 281 79.7
AL80U10060 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 3.2e-125 452.6 388 60.6
MCO15G349 Micromonas commoda HOM05D006202 ORTHO05D008227 1.5e-117 427.2 345 58.3
Hund12940 Selenicereus undatus HOM05D006202 ORTHO05D008227 3.3e-117 426.0 258 77.1
MELO3C023505.2 Cucumis melo HOM05D006202 ORTHO05D008227 5.6e-117 425.2 259 79.2
Cre13.g602901 Chlamydomonas reinhardtii HOM05D006202 ORTHO05D008227 1.4e-112 410.6 392 54.6
Psat1g128920 Pisum sativum HOM05D006202 ORTHO05D008227 1.4e-112 410.6 259 76.1
CARHR125690 Cardamine hirsuta HOM05D006202 ORTHO05D008227 4.6e-111 405.6 224 84.4
PRCOL_00002201 Prasinoderma coloniale HOM05D006202 ORTHO05D008227 3.3e-109 399.4 353 55.0
Pp3c6_6420 Physcomitrium patens HOM05D006202 ORTHO05D008227 2.5e-101 373.2 343 55.7
Cfa022704 Carpinus fangiana HOM05D006202 ORTHO05D008227 2.1e-95 353.6 369 49.1
SHI12251 Sapria himalayana HOM05D006202 ORTHO05D008227 1.7e-70 270.8 189 70.4
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 1.3e-65 254.6 303 42.9
SHI12244 Sapria himalayana HOM05D006202 ORTHO05D008227 1.6e-63 247.7 206 61.7
AagrBONN_evm.TU.Sc2ySwM_344.4902 Anthoceros agrestis HOM05D006202 ORTHO05D008227 3.7e-60 236.5 163 68.7
SHI12245 Sapria himalayana HOM05D006202 ORTHO05D008227 1.1e-53 214.9 169 65.1
ATR0605G108 Amborella trichopoda HOM05D006202 ORTHO05D008227 3.2e-48 196.8 131 74.0
SHI34064 Sapria himalayana HOM05D006202 ORTHO05D367267 3.6e-15 87.0 59 76.3
A05p13580 Brassica napus HOM05D006202 ORTHO05D033532 4.0e-14 83.6 90 48.9
BraA05t20295Z Brassica rapa HOM05D006202 ORTHO05D033532 4.0e-14 83.6 90 48.9
TAR623G0116 Trochodendron aralioides HOM05D006202 ORTHO05D414173 1.0e-09 68.9 35 85.7


User provided reference genes

Program Settings