Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0065800 Rhododendron simsii HOM05D007097 ORTHO05D008131 4.0e-128 461.5 237 100.0
Actinidia37742 Actinidia chinensis HOM05D007097 ORTHO05D008131 4.0e-43 179.1 260 45.0
Dinv31755 Davidia involucrata HOM05D007097 ORTHO05D008131 1.2e-36 157.5 257 38.9
CAN.G1245.7 Capsicum annuum HOM05D007097 ORTHO05D008131 1.8e-35 153.7 249 43.8
Cc06_g06500 Coffea canephora HOM05D007097 ORTHO05D008131 2.9e-33 146.4 277 35.7
CiPaw.09G020600 Carya illinoinensis HOM05D007097 ORTHO05D008131 3.7e-33 146.0 251 40.6
PGSC0003DMG400028148 Solanum tuberosum HOM05D007097 ORTHO05D008131 4.9e-33 145.6 249 37.3
Gorai.006G149800 Gossypium raimondii HOM05D007097 ORTHO05D008131 4.1e-32 142.5 236 38.1
Sopen10g032440 Solanum pennellii HOM05D007097 ORTHO05D008131 1.6e-31 140.6 247 36.8
Thecc.05G103600 Theobroma cacao HOM05D007097 ORTHO05D008131 2.1e-31 140.2 232 38.8
Lsat_1_v5_gn_1_57020 Lactuca sativa HOM05D007097 ORTHO05D008131 2.7e-31 139.8 238 38.2
Solyc10g081930.1 Solanum lycopersicum HOM05D007097 ORTHO05D008131 2.7e-31 139.8 247 36.8
Manes.09G044900 Manihot esculenta HOM05D007097 ORTHO05D008131 4.6e-31 139.0 243 37.4
Gohir.A09G134600 Gossypium hirsutum HOM05D007097 ORTHO05D008131 7.8e-31 138.3 236 37.3
Lsat_1_v5_gn_2_55400 Lactuca sativa HOM05D007097 ORTHO05D008131 7.8e-31 138.3 231 39.4
TWI74G0793 Tripterygium wilfordii HOM05D007097 ORTHO05D008131 7.8e-31 138.3 235 40.4
COL.COLO4_29582 Corchorus olitorius HOM05D007097 ORTHO05D008131 1.0e-30 137.9 233 37.8
PGSC0003DMG400016423 Solanum tuberosum HOM05D007097 ORTHO05D008131 1.0e-30 137.9 255 39.6
DCAR_020707 Daucus carota HOM05D007097 ORTHO05D008131 1.7e-30 137.1 235 36.6
Sopen01g003170 Solanum pennellii HOM05D007097 ORTHO05D008131 3.9e-30 136.0 243 39.9
Haze_20191 Corylus avellana HOM05D007097 ORTHO05D008131 5.1e-30 135.6 250 40.0
Solyc01g007190.3 Solanum lycopersicum HOM05D007097 ORTHO05D008131 1.9e-29 133.7 247 39.7
Nitab4.5_0005325g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 2.5e-29 133.3 253 37.2
SGA_v2.0_scaffold13G06627 Striga asiatica HOM05D007097 ORTHO05D008131 3.3e-29 132.9 293 36.5
Migut.J00707 Erythranthe guttata HOM05D007097 ORTHO05D008131 5.6e-29 132.1 275 36.0
Gohir.D09G131100 Gossypium hirsutum HOM05D007097 ORTHO05D008131 5.6e-29 132.1 236 36.0
Nitab4.5_0000020g0090 Nicotiana tabacum HOM05D007097 ORTHO05D008131 7.3e-29 131.7 255 36.5
HanXRQChr01g0025661 Helianthus annuus HOM05D007097 ORTHO05D008131 9.5e-29 131.3 238 39.5
SGA_v2.0_scaffold31G12846 Striga asiatica HOM05D007097 ORTHO05D008131 8.1e-28 128.3 277 37.2
TAR633G2246 Trochodendron aralioides HOM05D007097 ORTHO05D008131 1.1e-27 127.9 241 37.3
ClCG10G018390 Citrullus lanatus HOM05D007097 ORTHO05D008131 1.8e-27 127.1 252 39.3
Cpa.g.sc104.37 Carica papaya HOM05D007097 ORTHO05D008131 4.0e-27 125.9 237 35.0
Sabra06G0157000 Salix brachista HOM05D007097 ORTHO05D008131 5.2e-27 125.6 234 35.5
Prupe.7G095200 Prunus persica HOM05D007097 ORTHO05D008131 6.8e-27 125.2 249 34.5
Cfa020025 Carpinus fangiana HOM05D007097 ORTHO05D008131 5.8e-26 122.1 253 39.5
FvH4_6g20260 Fragaria vesca HOM05D007097 ORTHO05D008131 7.6e-26 121.7 248 33.9
Actinidia37743 Actinidia chinensis HOM05D007097 ORTHO05D008131 9.9e-26 121.3 149 49.0
SalBow5G4860 Salvia bowleyana HOM05D007097 ORTHO05D008131 1.3e-25 120.9 233 35.6
Peaxi162Scf00211g00105 Petunia axillaris HOM05D007097 ORTHO05D008131 1.7e-25 120.6 235 36.6
FAN05G0285 Fragaria x ananassa HOM05D007097 ORTHO05D008131 2.9e-25 119.8 249 33.7
Atru.chr8.1373 Acer truncatum HOM05D007097 ORTHO05D008131 6.4e-25 118.6 223 38.6
SGA_v2.0_scaffold35G14013 Striga asiatica HOM05D007097 ORTHO05D008131 6.4e-25 118.6 229 36.2
FAN05G2168 Fragaria x ananassa HOM05D007097 ORTHO05D008131 8.3e-25 118.2 248 31.9
MD12G1039700 Malus domestica HOM05D007097 ORTHO05D008131 1.1e-24 117.9 258 34.5
Sed0014531 Sechium edule HOM05D007097 ORTHO05D008131 2.4e-24 116.7 256 38.7
FAN14G0555 Fragaria x ananassa HOM05D007097 ORTHO05D008131 3.2e-24 116.3 247 33.2
Nn2g14294 Nelumbo nucifera HOM05D007097 ORTHO05D008131 3.2e-24 116.3 249 35.7
FAN02G1136 Fragaria x ananassa HOM05D007097 ORTHO05D008131 4.1e-24 115.9 249 31.7
FAN09G3875 Fragaria x ananassa HOM05D007097 ORTHO05D008131 4.1e-24 115.9 250 32.0
Nn6g34702 Nelumbo nucifera HOM05D007097 ORTHO05D008131 4.1e-24 115.9 259 34.0
Eucgr.K02617 Eucalyptus grandis HOM05D007097 ORTHO05D008131 7.1e-24 115.2 240 39.6
Sed0025399 Sechium edule HOM05D007097 ORTHO05D008131 7.1e-24 115.2 242 37.2
HanXRQChr09g0239941 Helianthus annuus HOM05D007097 ORTHO05D008131 9.2e-24 114.8 234 39.7
Manes.08G033000 Manihot esculenta HOM05D007097 ORTHO05D008131 9.2e-24 114.8 232 33.6
MD14G1038300 Malus domestica HOM05D007097 ORTHO05D008131 1.2e-23 114.4 251 29.5
unitig_22.g5144 Utricularia gibba HOM05D007097 ORTHO05D008131 1.2e-23 114.4 263 32.7
ECA248G2186 Erigeron canadensis HOM05D007097 ORTHO05D008131 1.6e-23 114.0 258 33.3
HPP92_026079 Vanilla planifolia HOM05D007097 ORTHO05D008131 3.5e-23 112.8 256 31.2
MELO3C009534.2 Cucumis melo HOM05D007097 ORTHO05D008131 6.0e-23 112.1 258 36.0
DCAR_009176 Daucus carota HOM05D007097 ORTHO05D008131 6.0e-23 112.1 227 32.6
HanXRQChr13g0398381 Helianthus annuus HOM05D007097 ORTHO05D008131 7.8e-23 111.7 240 35.4
Lalb_Chr01g0017871 Lupinus albus HOM05D007097 ORTHO05D008131 7.8e-23 111.7 235 36.2
HPP92_025143 Vanilla planifolia HOM05D007097 ORTHO05D008131 1.0e-22 111.3 256 31.2
Nitab4.5_0001287g0020 Nicotiana tabacum HOM05D007097 ORTHO05D008131 1.3e-22 110.9 229 36.2
CsaV3_3G037910 Cucumis sativus L. HOM05D007097 ORTHO05D008131 2.3e-22 110.2 255 35.3
Ciclev10012818m.g Citrus clementina HOM05D007097 ORTHO05D008131 3.9e-22 109.4 226 36.7
Glyma.10G081100 Glycine max HOM05D007097 ORTHO05D008131 5.1e-22 109.0 239 31.8
VMungo0720G1866 Vigna mungo HOM05D007097 ORTHO05D008131 1.5e-21 107.5 243 32.5
Lalb_Chr20g0111401 Lupinus albus HOM05D007097 ORTHO05D008131 5.6e-21 105.5 241 32.4
unitig_578.g16474 Utricularia gibba HOM05D007097 ORTHO05D008131 2.1e-20 103.6 258 31.8
TAR623G1722 Trochodendron aralioides HOM05D007097 ORTHO05D008131 4.7e-20 102.4 244 32.4
Glyma.03G201700 Glycine max HOM05D007097 ORTHO05D008131 1.1e-19 101.3 235 34.5
Phvul.007G268300 Phaseolus vulgaris HOM05D007097 ORTHO05D008131 8.9e-19 98.2 240 35.4
RcHm_v2.0_Chr3g0475851 Rosa chinensis HOM05D007097 ORTHO05D008131 1.2e-18 97.8 259 32.8
Ah.08g210070 Amaranthus hybridus HOM05D007097 ORTHO05D008131 2.0e-18 97.1 253 32.0
Ca_11701_v3 Cicer arietinum L. HOM05D007097 ORTHO05D008131 5.8e-18 95.5 231 28.6
Actinidia06180 Actinidia chinensis HOM05D000517 ORTHO05D008131 7.6e-18 95.1 219 32.4
Lj5g0024854 Lotus japonicus HOM05D007097 ORTHO05D008131 9.9e-18 94.7 250 27.6
Nitab4.5_0010913g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 9.9e-18 94.7 235 32.3
Lalb_Chr25g0288011 Lupinus albus HOM05D007097 ORTHO05D008131 1.3e-17 94.4 243 33.3
QL07p036825 Quercus lobata HOM05D007097 ORTHO05D008131 1.7e-17 94.0 264 32.6
Psat6g114400 Pisum sativum HOM05D007097 ORTHO05D008131 6.4e-17 92.0 233 27.9
Lsat_1_v5_gn_1_58041 Lactuca sativa HOM05D007097 ORTHO05D008131 8.4e-17 91.7 240 29.6
Sc02g0000610 Simmondsia chinensis HOM05D007097 ORTHO05D008131 1.4e-16 90.9 133 40.6
Glyma.02G197300 Glycine max HOM05D007097 ORTHO05D008131 4.2e-16 89.4 240 33.3
AUR62006282 Chenopodium quinoa HOM05D007097 ORTHO05D008131 7.1e-16 88.6 260 30.8
Medtr1g057600 Medicago truncatula HOM05D007097 ORTHO05D008131 7.1e-16 88.6 238 25.6
TPR.G2776 Trifolium pratense HOM05D007097 ORTHO05D008131 2.1e-15 87.0 273 22.7
Peaxi162Scf00388g01015 Petunia axillaris HOM05D007097 ORTHO05D008131 2.7e-15 86.7 79 57.0
AUR62026332 Chenopodium quinoa HOM05D007097 ORTHO05D008131 1.7e-14 84.0 240 29.2
ATR0772G224 Amborella trichopoda HOM05D007097 ORTHO05D008131 2.3e-14 83.6 227 30.8
Zm00001eb065580 Zea mays HOM05D007097 ORTHO05D008131 1.9e-13 80.5 261 33.7
HanXRQChr16g0532971 Helianthus annuus HOM05D007097 ORTHO05D008131 3.3e-13 79.7 93 46.2
ECA233G1347 Erigeron canadensis HOM05D007097 ORTHO05D008131 5.6e-13 79.0 231 29.0
Os04g0685700 Oryza sativa ssp. japonica HOM05D007097 ORTHO05D008131 3.6e-12 76.3 247 34.0
Nn1g01483 Nelumbo nucifera HOM05D007097 ORTHO05D008131 1.4e-11 74.3 95 42.1
GSVIVG01033951001 Vitis vinifera HOM05D009231 ORTHO05D010800 8.4e-09 65.1 134 35.1
Nn2g13712 Nelumbo nucifera HOM05D007097 ORTHO05D008131 6.0e-07 58.9 93 38.7
Nn8g40734 Nelumbo nucifera HOM05D007097 ORTHO05D008131 1.3e-06 57.8 47 51.1
EL10Ac7g16802 Beta vulgaris HOM05D007097 ORTHO05D008131 1.7e-06 57.4 245 27.8


User provided reference genes

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