Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0065600 Rhododendron simsii HOM05D005397 ORTHO05D006493 7.1e-215 750.4 387 100.0
Rhsim07G0244600 Rhododendron simsii HOM05D005397 ORTHO05D006493 6.5e-160 567.8 371 83.8
vmacro04326 Vaccinium macrocarpon HOM05D005397 ORTHO05D006493 2.6e-140 502.7 372 75.0
Actinidia29797 Actinidia chinensis HOM05D005397 ORTHO05D006493 3.4e-132 475.7 406 68.7
Dinv31812 Davidia involucrata HOM05D005397 ORTHO05D006493 1.8e-125 453.4 372 68.3
CSS0019191 Camellia sinensis var. sinensis HOM05D005397 ORTHO05D006493 4.0e-125 452.2 373 69.2
Thecc.08G038000 Theobroma cacao HOM05D005397 ORTHO05D006493 4.9e-115 418.7 373 64.3
GSVIVG01022614001 Vitis vinifera HOM05D005397 ORTHO05D006493 1.2e-113 414.1 372 64.0
Lj4A791T82 Lonicera japonica HOM05D005397 ORTHO05D006493 3.3e-111 406.0 388 61.1
Actinidia37979 Actinidia chinensis HOM05D005397 ORTHO05D006493 5.6e-111 405.2 405 61.5
Gohir.A05G188200 Gossypium hirsutum HOM05D005397 ORTHO05D006493 1.2e-110 404.1 367 63.8
Gorai.009G196600 Gossypium raimondii HOM05D005397 ORTHO05D006493 2.1e-110 403.3 371 62.3
Duzib093G1874 Durio zibethinus HOM05D005397 ORTHO05D006493 4.7e-110 402.1 372 62.9
TWI12G0995 Tripterygium wilfordii HOM05D005397 ORTHO05D006493 6.2e-110 401.7 372 61.0
Haze_22588 Corylus avellana HOM05D005397 ORTHO05D006493 6.8e-109 398.3 372 61.0
Gohir.D05G191300 Gossypium hirsutum HOM05D005397 ORTHO05D006493 6.8e-109 398.3 371 61.7
Cfa013909 Carpinus fangiana HOM05D005397 ORTHO05D006493 8.9e-109 397.9 372 60.8
Sopen04g034690 Solanum pennellii HOM05D005397 ORTHO05D006493 3.4e-108 396.0 373 61.1
ECA247G2991 Erigeron canadensis HOM05D005397 ORTHO05D006493 5.8e-108 395.2 382 59.7
Atru.chr13.353 Acer truncatum HOM05D005397 ORTHO05D006493 7.5e-108 394.8 373 63.5
PGSC0003DMG400003765 Solanum tuberosum HOM05D005397 ORTHO05D006493 7.5e-108 394.8 372 61.0
CAN.G851.6 Capsicum annuum HOM05D005397 ORTHO05D006493 1.7e-107 393.7 387 59.7
Migut.C00793 Erythranthe guttata HOM05D005397 ORTHO05D006493 1.7e-107 393.7 385 59.2
Nitab4.5_0011205g0010 Nicotiana tabacum HOM05D005397 ORTHO05D006493 3.7e-107 392.5 386 60.1
Cc10_g02070 Coffea canephora HOM05D005397 ORTHO05D006493 4.9e-107 392.1 369 61.8
Solyc04g081070.3 Solanum lycopersicum HOM05D005397 ORTHO05D006493 4.9e-107 392.1 373 60.9
PSO541G6090 Papaver somniferum HOM05D005397 ORTHO05D006493 1.1e-106 391.0 372 60.8
MSTRG.1224 Avicennia marina HOM05D005397 ORTHO05D006493 1.9e-106 390.2 368 61.1
DCAR_017505 Daucus carota HOM05D005397 ORTHO05D006493 1.9e-106 390.2 372 60.2
Lsat_1_v5_gn_1_16260 Lactuca sativa HOM05D005397 ORTHO05D006493 1.9e-106 390.2 383 60.8
SalBow7G0110 Salvia bowleyana HOM05D005397 ORTHO05D006493 1.9e-106 390.2 372 58.3
DCAR_013850 Daucus carota HOM05D005397 ORTHO05D006493 5.4e-106 388.7 377 60.2
Oeu046246.1 Olea europaea HOM05D005397 ORTHO05D006493 9.2e-106 387.9 373 59.2
QL02p010766 Quercus lobata HOM05D005397 ORTHO05D006493 1.6e-105 387.1 372 59.7
Aqoxy6G02360 Aquilegia oxysepala HOM05D005397 ORTHO05D006493 6.0e-105 385.2 372 60.2
PSO675G6273 Papaver somniferum HOM05D005397 ORTHO05D006493 1.0e-104 384.4 372 59.9
COL.COLO4_26194 Corchorus olitorius HOM05D005397 ORTHO05D006493 2.3e-104 383.3 373 59.2
CiPaw.07G153900 Carya illinoinensis HOM05D005397 ORTHO05D006493 2.5e-103 379.8 372 59.1
TAR625G0278 Trochodendron aralioides HOM05D005397 ORTHO05D006493 4.3e-103 379.0 392 57.9
Potri.005G235000 Populus trichocarpa HOM05D005397 ORTHO05D006493 1.2e-102 377.5 372 60.5
Sabra05G0181200 Salix brachista HOM05D005397 ORTHO05D006493 3.6e-102 375.9 371 60.1
HanXRQChr04g0106461 Helianthus annuus HOM05D005397 ORTHO05D006493 4.7e-102 375.6 387 58.1
Phvul.001G009500 Phaseolus vulgaris HOM05D005397 ORTHO05D006493 6.2e-102 375.2 371 59.6
FvH4_2g39070 Fragaria vesca HOM05D005397 ORTHO05D006493 8.1e-102 374.8 372 57.5
Prupe.1G370400 Prunus persica HOM05D005397 ORTHO05D006493 1.8e-101 373.6 375 57.3
CANSAT78G0864 Cannabis sativa HOM05D005397 ORTHO05D006493 2.4e-101 373.2 372 59.1
FAN15G0228 Fragaria x ananassa HOM05D005397 ORTHO05D006493 3.1e-101 372.9 372 57.5
FAN20G2387 Fragaria x ananassa HOM05D005397 ORTHO05D006493 3.1e-101 372.9 372 57.8
PGR083G1852 Punica granatum HOM05D005397 ORTHO05D006493 3.1e-101 372.9 377 60.7
Nn5g29235 Nelumbo nucifera HOM05D005397 ORTHO05D006493 1.5e-100 370.5 386 58.5
Eucgr.F01622 Eucalyptus grandis HOM05D005397 ORTHO05D006493 2.9e-99 366.3 375 59.2
Ca_13392_v3 Cicer arietinum L. HOM05D005397 ORTHO05D006493 3.8e-99 365.9 371 57.4
VMungo0647G1731 Vigna mungo HOM05D005397 ORTHO05D006493 4.9e-99 365.5 371 58.2
RcHm_v2.0_Chr6g0302171 Rosa chinensis HOM05D005397 ORTHO05D006493 8.4e-99 364.8 372 56.7
arahy.Tifrunner.gnm1.ann1.WNU9KC Arachis hypogaea HOM05D005397 ORTHO05D006493 1.9e-98 363.6 372 59.1
SGA_v2.0_scaffold11G05874 Striga asiatica HOM05D005397 ORTHO05D006493 3.2e-98 362.8 344 60.8
CDE05G0602 Ceratophyllum demersum HOM05D005397 ORTHO05D006493 5.4e-98 362.1 388 56.4
Manes.18G017200 Manihot esculenta HOM05D005397 ORTHO05D006493 5.4e-98 362.1 372 57.0
Hund17223 Selenicereus undatus HOM05D005397 ORTHO05D006493 2.1e-97 360.1 371 54.7
arahy.Tifrunner.gnm1.ann1.FP07R2 Arachis hypogaea HOM05D005397 ORTHO05D006493 2.7e-97 359.8 372 58.9
Sc02g0005180 Simmondsia chinensis HOM05D005397 ORTHO05D006493 2.7e-97 359.8 371 57.4
HanXRQChr02g0041801 Helianthus annuus HOM05D005397 ORTHO05D006493 3.5e-97 359.4 387 56.6
Lj5g0007176 Lotus japonicus HOM05D005397 ORTHO05D006493 4.6e-97 359.0 368 58.2
Glyma.14G216700 Glycine max HOM05D005397 ORTHO05D006493 1.0e-96 357.8 371 56.9
Lalb_Chr14g0369691 Lupinus albus HOM05D005397 ORTHO05D006493 1.0e-96 357.8 324 62.3
Glyma.17G255300 Glycine max HOM05D005397 ORTHO05D006493 3.9e-96 355.9 371 56.9
Lalb_Chr24g0398791 Lupinus albus HOM05D005397 ORTHO05D006493 6.6e-96 355.1 373 57.4
MELO3C010989.2 Cucumis melo HOM05D005397 ORTHO05D006493 1.1e-95 354.4 378 56.9
Sed0023445 Sechium edule HOM05D005397 ORTHO05D006493 2.5e-95 353.2 372 57.3
unitig_26.g9841 Utricularia gibba HOM05D005397 ORTHO05D006493 2.5e-95 353.2 403 53.3
Medtr1g023310 Medicago truncatula HOM05D005397 ORTHO05D006493 3.3e-95 352.8 373 55.8
AUR62014423 Chenopodium quinoa HOM05D005397 ORTHO05D006493 4.3e-95 352.4 371 54.7
Psat6g005320 Pisum sativum HOM05D005397 ORTHO05D006493 5.6e-95 352.1 374 56.1
ClCG08G014500 Citrullus lanatus HOM05D005397 ORTHO05D006493 7.3e-95 351.7 372 57.0
CsaV3_2G029290 Cucumis sativus L. HOM05D005397 ORTHO05D006493 9.6e-95 351.3 378 56.3
AUR62019159 Chenopodium quinoa HOM05D005397 ORTHO05D006493 2.1e-94 350.1 371 54.2
AUR62034574 Chenopodium quinoa HOM05D005397 ORTHO05D006493 2.1e-94 350.1 371 54.2
Cpa.g.sc140.23 Carica papaya HOM05D005397 ORTHO05D006493 4.7e-94 349.0 391 54.7
EL10Ac1g00550 Beta vulgaris HOM05D005397 ORTHO05D006493 5.3e-93 345.5 364 54.9
ATR0149G027 Amborella trichopoda HOM05D005397 ORTHO05D006493 3.5e-89 332.8 389 53.5
FAN27G0831 Fragaria x ananassa HOM05D005397 ORTHO05D006493 3.5e-89 332.8 340 56.8
Peaxi162Scf00287g01315 Petunia axillaris HOM05D005397 ORTHO05D006493 1.5e-87 327.4 360 56.4
AL8G18860 Arabidopsis lyrata HOM05D005397 ORTHO05D006493 7.3e-87 325.1 319 59.9
THA.LOC104810654 Tarenaya hassleriana HOM05D005397 ORTHO05D006493 9.6e-87 324.7 397 53.1
Carub.0008s0657 Capsella rubella HOM05D005397 ORTHO05D006493 1.6e-86 323.9 319 59.6
BcaC06g31756 Brassica carinata HOM05D005397 ORTHO05D006493 2.1e-86 323.6 389 52.4
AT5G42480 Arabidopsis thaliana HOM05D005397 ORTHO05D006493 8.1e-86 321.6 408 51.7
Sp2g06890 Schrenkiella parvula HOM05D005397 ORTHO05D006493 8.1e-86 321.6 334 57.2
SpUn0014_0040 Schrenkiella parvula HOM05D005397 ORTHO05D006493 8.1e-86 321.6 334 57.2
SpUn0090_0020 Schrenkiella parvula HOM05D005397 ORTHO05D006493 8.1e-86 321.6 334 57.2
CARHR181880 Cardamine hirsuta HOM05D005397 ORTHO05D006493 1.4e-85 320.9 402 51.2
Aa31LG9G12600 Aethionema arabicum HOM05D005397 ORTHO05D006493 1.5e-84 317.4 401 51.4
Thhalv10003151m.g Eutrema salsugineum HOM05D005397 ORTHO05D006493 9.9e-84 314.7 408 49.5
TPR.G40295 Trifolium pratense HOM05D005397 ORTHO05D006493 2.2e-83 313.5 333 55.9
BcaC02g10766 Brassica carinata HOM05D005397 ORTHO05D006493 2.9e-83 313.2 386 52.1
C04p25360 Brassica napus HOM05D005397 ORTHO05D006493 2.9e-83 313.2 386 52.1
BolC4t24042H Brassica oleracea HOM05D005397 ORTHO05D006493 2.9e-83 313.2 386 52.1
A06p48310 Brassica napus HOM05D005397 ORTHO05D006493 4.2e-82 309.3 368 53.3
BraA06t27701Z Brassica rapa HOM05D005397 ORTHO05D006493 4.2e-82 309.3 368 53.3
HPP92_022425 Vanilla planifolia HOM05D005397 ORTHO05D006493 3.5e-81 306.2 372 51.1
Ciclev10000372m.g Citrus clementina HOM05D005397 ORTHO05D006493 2.0e-76 290.4 372 49.7
SEGI_32422 Sequoiadendron giganteum HOM05D005397 ORTHO05D006493 3.8e-75 286.2 302 53.0
Os02g0122400 Oryza sativa ssp. japonica HOM05D005397 ORTHO05D006493 2.5e-71 273.5 306 52.6
Zm00001eb208440 Zea mays HOM05D005397 ORTHO05D006493 2.4e-69 266.9 306 50.7
SEGI_36019 Sequoiadendron giganteum HOM05D005397 ORTHO05D006493 1.7e-67 260.8 281 53.0
Potri.002G027501 Populus trichocarpa HOM05D005397 ORTHO05D006493 1.3e-64 251.1 249 59.4
Pp3c21_1260 Physcomitrium patens HOM05D005397 ORTHO05D006493 2.6e-60 236.9 308 46.4
Mapoly0064s0104 Marchantia polymorpha HOM05D005397 ORTHO05D006493 3.4e-60 236.5 334 44.9
AagrBONN_evm.TU.Sc2ySwM_228.2424 Anthoceros agrestis HOM05D005397 ORTHO05D006493 3.6e-57 226.5 368 42.7
Pp3c22_12970 Physcomitrium patens HOM05D005397 ORTHO05D006493 6.7e-56 222.2 302 45.4
SMO116G0264 Selaginella moellendorffii HOM05D005397 ORTHO05D006493 2.6e-47 193.7 275 45.1
ECA247G0112 Erigeron canadensis HOM05D005397 ORTHO05D006493 2.6e-44 183.7 296 44.6
CBR_g40449 Chara braunii HOM05D005397 ORTHO05D006493 5.3e-37 159.5 370 35.9
CBR_g40437 Chara braunii HOM05D005397 ORTHO05D006493 7.0e-37 159.1 370 36.2
ECA233G1040 Erigeron canadensis HOM05D000006 ORTHO05D006493 5.0e-27 126.3 136 53.7
MD15G1016900 Malus domestica HOM05D005397 ORTHO05D006493 2.6e-23 114.0 137 51.8
PRCOL_00000058 Prasinoderma coloniale HOM05D005397 ORTHO05D006493 2.6e-23 114.0 280 32.9
Lsat_1_v5_gn_8_141420 Lactuca sativa HOM05D005397 ORTHO05D006493 1.8e-08 64.7 62 56.5
CANSAT78G0439 Cannabis sativa HOM05D005397 ORTHO05D006493 6.8e-08 62.8 49 65.3


User provided reference genes

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