Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 6.6e-193 677.2 335 100.0
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 4.2e-155 551.6 367 79.0
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.3e-124 450.3 363 66.7
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.3e-124 450.3 363 66.7
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 2.1e-122 443.0 368 65.2
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 3.0e-121 439.1 369 64.0
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 9.5e-99 364.4 364 55.5
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.0e-97 360.9 369 53.7
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 3.0e-97 359.4 366 54.6
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 2.0e-96 356.7 365 55.9
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 2.2e-95 353.2 380 54.5
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 2.2e-95 353.2 380 54.5
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.4e-94 350.5 389 53.5
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.6e-93 347.1 387 53.0
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 5.6e-91 338.6 366 54.4
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 2.1e-90 336.7 360 52.2
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.8e-90 336.3 365 54.5
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 1.0e-89 334.3 365 51.8
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.0e-89 334.3 364 53.3
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.0e-89 332.8 365 54.2
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 3.0e-89 332.8 362 51.7
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 4.0e-89 332.4 359 52.9
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 2.2e-87 326.6 365 53.4
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 1.1e-86 324.3 364 51.9
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.1e-86 324.3 363 51.2
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.8e-86 323.6 336 56.5
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 1.8e-86 323.6 364 52.2
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 2.4e-86 323.2 369 49.3
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 2.4e-86 323.2 370 50.8
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 7.0e-86 321.6 362 50.3
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 1.2e-85 320.9 366 54.4
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 5.9e-85 318.5 375 49.6
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 2.3e-84 316.6 367 54.0
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 3.9e-84 315.8 377 49.3
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 5.0e-84 315.5 364 52.7
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 6.6e-84 315.1 362 50.3
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 8.6e-84 314.7 357 49.9
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 1.5e-83 313.9 367 52.6
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 1.5e-83 313.9 373 49.1
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 1.5e-83 313.9 366 50.8
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 1.9e-83 313.5 367 51.2
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 7.3e-83 311.6 372 49.5
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 9.5e-83 311.2 363 52.1
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.2e-82 310.8 367 49.6
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 4.7e-82 308.9 369 49.9
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 8.0e-82 308.1 366 48.9
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 2.3e-81 306.6 360 50.8
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 4.0e-81 305.8 369 50.7
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 5.2e-81 305.4 365 50.7
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 5.2e-81 305.4 359 50.7
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 5.2e-81 305.4 368 50.8
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 6.8e-81 305.1 366 48.6
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 3.4e-80 302.8 366 50.0
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 3.4e-80 302.8 373 49.6
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.7e-79 300.4 367 49.9
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 1.7e-79 300.4 367 50.1
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 2.9e-79 299.7 361 49.6
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 3.7e-79 299.3 367 49.9
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 3.7e-79 299.3 362 46.4
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 3.7e-79 299.3 381 48.6
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 6.4e-79 298.5 357 48.2
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 6.4e-79 298.5 359 50.1
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.4e-78 296.6 370 49.7
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 9.2e-78 294.7 372 50.0
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 1.2e-77 294.3 361 52.4
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 1.1e-75 287.7 371 48.8
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 4.3e-75 285.8 365 47.7
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 4.3e-75 285.8 372 45.4
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 7.3e-75 285.0 303 51.2
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 7.3e-75 285.0 273 55.3
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 7.3e-75 285.0 364 48.1
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 9.5e-75 284.6 364 48.4
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.2e-74 284.3 366 48.9
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.6e-74 283.9 365 48.2
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 2.1e-74 283.5 368 48.1
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 2.8e-74 283.1 365 48.2
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 2.8e-74 283.1 364 45.9
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 4.7e-74 282.3 361 49.3
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 6.2e-74 282.0 397 45.3
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 8.1e-74 281.6 377 45.1
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.1e-73 281.2 396 45.5
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.1e-73 281.2 396 45.5
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.4e-73 280.8 364 45.9
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.8e-73 280.4 272 54.8
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 2.3e-73 280.0 359 47.9
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 6.8e-73 278.5 370 46.2
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 8.9e-73 278.1 372 45.2
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 8.9e-73 278.1 343 48.7
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 1.2e-72 277.7 364 48.1
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 2.6e-72 276.6 367 45.8
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 5.8e-72 275.4 365 45.5
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 7.5e-72 275.0 369 47.7
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 7.5e-72 275.0 363 47.4
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 7.5e-72 275.0 364 47.5
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 1.3e-71 274.2 360 46.9
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 2.2e-71 273.5 367 44.7
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 3.7e-71 272.7 272 54.8
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 4.9e-71 272.3 265 53.2
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 6.4e-71 271.9 364 46.7
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 6.4e-71 271.9 360 46.7
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.4e-70 270.8 366 46.4
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 5.4e-70 268.9 358 45.5
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 7.1e-70 268.5 362 47.2
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 7.1e-70 268.5 359 46.5
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 4.6e-69 265.8 362 47.2
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 7.8e-69 265.0 362 47.0
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 7.8e-69 265.0 364 45.3
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.0e-68 264.6 405 41.7
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 1.7e-68 263.8 362 46.1
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.7e-68 263.8 305 50.8
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 2.5e-67 260.0 298 48.7
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 3.3e-67 259.6 355 47.0
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 5.6e-67 258.8 368 45.9
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 7.3e-67 258.5 365 46.8
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 7.3e-67 258.5 374 42.5
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 9.5e-67 258.1 358 47.2
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 1.2e-66 257.7 365 44.9
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 3.6e-66 256.1 359 46.5
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 3.1e-65 253.1 362 45.0
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 3.1e-65 253.1 361 43.8
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.1e-65 253.1 318 51.3
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 1.2e-64 251.1 367 43.3
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 9.9e-64 248.1 260 51.2
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.3e-63 247.7 283 47.7
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.2e-63 246.9 331 46.8
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 4.1e-62 242.7 295 48.8
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 7.1e-62 241.9 326 44.8
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 3.5e-61 239.6 324 46.6
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 6.9e-57 225.3 320 46.9
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 4.4e-56 222.6 320 45.9
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 5.8e-56 222.2 301 48.2
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 4.9e-55 219.2 360 43.3
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 1.4e-54 217.6 272 44.1
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 1.4e-54 217.6 272 44.1
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 1.9e-54 217.2 272 44.1
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 3.2e-54 216.5 345 39.7
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 1.2e-53 214.5 314 44.9
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 2.1e-53 213.8 265 46.0
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.3e-52 211.1 322 41.9
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 6.6e-52 208.8 240 46.7
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.6e-50 204.1 187 57.8
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 4.8e-50 202.6 375 36.5
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.1e-49 201.4 147 72.1
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 6.0e-45 185.7 182 54.9
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 2.3e-44 183.7 311 37.3
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 7.4e-43 178.7 315 37.8
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 8.1e-42 175.3 264 42.0
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 1.5e-40 171.0 181 50.3
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 3.4e-40 169.9 233 46.4
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.5e-35 153.7 330 33.6
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 4.8e-34 149.4 171 50.9
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.0e-32 144.1 323 33.1
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 1.7e-31 141.0 321 35.2
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 1.7e-31 141.0 173 46.8
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 5.7e-27 125.9 210 41.4
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 6.3e-26 122.5 254 33.5
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 8.2e-26 122.1 120 48.3
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 6.9e-25 119.0 161 43.5
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 9.0e-25 118.6 204 43.1
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 6.1e-21 105.9 101 53.5
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 1.0e-20 105.1 120 42.5
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 1.8e-20 104.4 450 22.9
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 4.3e-19 99.8 285 26.7
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 9.1e-17 92.0 106 45.3
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 1.2e-16 91.7 107 49.5
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 4.5e-16 89.7 155 38.1
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 5.9e-16 89.4 132 46.2
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.3e-15 88.2 100 53.0
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 8.5e-15 85.5 56 67.9
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.9e-14 84.3 56 67.9
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 1.9e-14 84.3 89 51.7
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 4.2e-14 83.2 148 39.2
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 3.3e-11 73.6 43 72.1
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 7.4e-11 72.4 86 46.5
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 1.4e-09 68.2 291 24.4
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 4.2e-06 56.6 64 43.8


User provided reference genes

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