Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 0.0e+00 1751.1 884 100.0
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 0.0e+00 1510.4 882 86.8
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 0.0e+00 1332.8 877 78.0
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1320.8 882 76.9
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1295.0 915 73.6
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 0.0e+00 1127.1 887 66.9
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 0.0e+00 1077.0 748 73.5
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 4.3e-300 1034.6 877 63.2
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 5.8e-297 1024.2 882 61.3
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 2.8e-291 1005.4 881 59.5
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 8.1e-291 1003.8 881 60.6
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 2.6e-289 998.8 877 61.6
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 2.6e-289 998.8 882 60.4
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 4.6e-286 988.0 879 59.6
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.8e-285 986.1 880 59.2
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.1e-284 983.4 879 59.5
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 3.3e-284 981.9 885 58.5
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 8.1e-283 977.2 866 58.5
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.2e-281 973.4 881 58.5
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 7.1e-279 964.1 883 58.6
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 9.3e-279 963.8 884 58.9
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 2.7e-278 962.2 881 58.5
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 1.3e-277 959.9 880 57.8
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.9e-276 956.1 891 57.5
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 1.9e-276 956.1 887 58.9
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 1.3e-275 953.4 885 57.2
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.6e-275 953.0 891 57.2
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 2.8e-275 952.2 885 57.2
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.8e-275 951.4 882 59.0
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 1.1e-274 950.3 887 58.3
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.5e-273 946.4 882 59.1
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 2.0e-273 946.0 886 57.6
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.0e-272 943.7 873 59.6
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.3e-272 943.3 885 56.5
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 3.9e-269 931.8 878 56.6
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 4.5e-265 918.3 890 56.3
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 7.6e-265 917.5 833 58.1
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 2.7e-262 909.1 884 57.4
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 2.3e-261 906.0 896 54.7
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 3.3e-260 902.1 920 56.3
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.7e-260 901.4 898 55.3
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 2.2e-259 899.4 878 56.5
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 4.8e-259 898.3 879 55.5
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 8.5e-256 887.5 748 61.8
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.0e-253 880.6 885 53.0
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 5.7e-252 874.8 893 53.8
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 2.0e-249 866.3 647 70.0
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 5.9e-249 864.8 885 52.9
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 1.7e-248 863.2 886 53.2
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 8.5e-248 860.9 886 52.9
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 1.4e-247 860.1 949 51.2
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 5.2e-245 851.7 951 50.7
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 8.8e-245 850.9 881 52.1
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.4e-242 843.6 891 51.7
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 5.9e-241 838.2 888 51.6
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.0e-240 837.4 884 52.3
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 2.7e-238 829.3 854 54.9
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 3.6e-238 828.9 883 52.7
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 2.2e-235 819.7 932 51.1
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 1.4e-234 817.0 867 53.6
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 5.9e-233 811.6 867 51.2
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 1.7e-232 810.1 888 50.9
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 9.4e-231 804.3 876 50.7
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.7e-230 802.7 885 48.8
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 4.7e-230 802.0 937 49.5
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 2.3e-229 799.7 887 50.7
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 7.5e-228 794.7 883 48.7
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 1.1e-226 790.8 892 48.3
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 1.6e-225 786.9 887 49.7
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 5.9e-225 785.0 880 50.6
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 1.3e-224 783.9 903 49.2
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 1.7e-224 783.5 887 48.6
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 1.2e-222 777.3 835 51.6
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 2.1e-222 776.5 882 48.4
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 4.0e-221 772.3 732 58.3
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 1.2e-220 770.8 895 50.5
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 2.0e-220 770.0 697 57.8
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 1.7e-216 756.9 888 47.9
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 3.6e-214 749.2 887 47.8
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 8.0e-214 748.0 887 47.0
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 8.0e-214 748.0 906 47.9
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 1.4e-213 747.3 888 47.1
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 1.4e-213 747.3 888 46.8
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 1.8e-213 746.9 888 46.5
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 4.0e-213 745.7 888 46.7
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 2.2e-211 740.0 732 54.2
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 2.3e-208 729.9 883 46.2
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.1e-207 727.6 862 48.3
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 1.6e-206 723.8 697 55.1
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.3e-205 719.9 884 46.5
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 1.3e-200 704.1 889 46.3
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 6.6e-200 701.8 625 58.9
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 3.6e-198 696.0 880 45.8
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 4.7e-198 695.7 807 46.8
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 3.4e-196 689.5 710 53.2
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.4e-194 684.1 884 45.5
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 3.5e-193 679.5 674 54.0
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 2.8e-190 669.8 894 42.7
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.1e-189 666.4 856 45.9
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.4e-188 662.9 886 44.8
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 1.4e-186 657.5 702 51.9
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 2.1e-185 653.7 883 44.8
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.2e-177 627.9 677 53.2
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.1e-170 604.7 879 41.6
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 5.6e-167 592.4 694 46.8
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 3.1e-165 586.6 644 49.7
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 2.3e-152 543.9 780 41.0
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 6.9e-141 505.8 742 41.2
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 1.3e-139 501.5 909 39.2
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 3.6e-137 493.4 884 35.3
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 3.7e-134 483.4 559 49.7
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 6.3e-126 456.1 700 39.4
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 7.2e-122 442.6 759 38.9
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.4e-120 438.3 553 43.0
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 3.8e-115 420.2 594 41.8
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 8.0e-113 412.5 261 79.7
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 1.2e-100 372.1 237 80.2
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.3e-99 367.9 240 78.8
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 1.6e-97 361.7 831 31.9
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 2.3e-91 341.3 957 29.4
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.8e-89 334.3 239 69.5
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 3.7e-86 323.9 731 31.7
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 1.9e-82 311.6 964 29.0
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 1.9e-82 311.6 964 29.0
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 2.5e-82 311.2 192 81.8
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 4.7e-81 307.0 401 46.1
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 4.9e-78 297.0 525 35.6
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 2.7e-76 291.2 191 75.9
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 5.2e-72 276.9 196 67.9
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 3.8e-70 270.8 193 69.4
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 2.3e-67 261.5 361 39.3
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 1.4e-64 252.3 187 65.2
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 6.0e-60 236.9 333 41.1
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.0e-59 236.1 217 53.5
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 2.3e-59 235.0 257 51.8
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 4.3e-58 230.7 765 27.2
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 4.8e-57 227.3 248 50.8
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 1.0e-51 209.5 139 77.0
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 1.8e-51 208.8 331 38.1
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.3e-48 197.2 237 47.7
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 2.2e-46 191.8 185 49.7
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 1.4e-45 189.1 180 53.9
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 9.3e-45 186.4 143 69.2
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.9e-43 181.0 240 46.2
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 1.6e-41 175.6 221 46.2
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 8.4e-38 163.3 181 48.1
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 1.4e-37 162.5 122 69.7
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 4.2e-37 161.0 164 49.4
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 1.2e-28 132.9 84 79.8
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 4.3e-26 124.4 92 64.1
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 1.7e-25 122.5 92 63.0
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 4.8e-25 120.9 94 70.2
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 8.2e-25 120.2 333 29.7
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 6.9e-24 117.1 100 61.0
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 9.1e-24 116.7 205 38.5
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 5.9e-23 114.0 186 37.6
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 5.0e-22 110.9 226 31.9
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 3.6e-20 104.8 192 37.5
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 7.7e-15 87.0 114 43.9
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 4.7e-12 77.8 114 34.2
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 1.7e-09 69.3 50 64.0
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.9e-06 58.5 85 38.8
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 5.0e-06 57.8 65 49.2
Cfa026921 Carpinus fangiana HOM05D004248 ORTHO05D004978 8.5e-06 57.0 176 25.6


User provided reference genes

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