Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 1.9e-275 951.8 468 100.0
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 1.4e-217 759.6 503 78.9
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 5.9e-216 754.2 462 82.0
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 3.6e-213 745.0 462 81.2
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 1.7e-207 726.1 465 79.1
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 3.1e-204 715.3 453 79.9
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 1.5e-203 713.0 467 77.3
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 2.6e-203 712.2 453 79.2
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 2.4e-201 705.7 439 81.3
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 3.2e-201 705.3 451 78.3
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 4.1e-201 704.9 465 77.0
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 9.2e-201 703.7 464 76.1
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 1.6e-200 703.0 464 76.3
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 1.6e-200 703.0 453 77.7
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 3.5e-200 701.8 455 78.2
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 4.6e-200 701.4 441 79.8
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 6.0e-200 701.0 455 77.6
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 6.0e-200 701.0 454 78.2
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 1.3e-199 699.9 462 77.1
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 2.3e-199 699.1 451 78.5
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 3.0e-199 698.7 459 76.7
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 3.9e-199 698.4 455 77.1
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 3.9e-199 698.4 455 77.1
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 5.0e-199 698.0 455 76.9
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 5.0e-199 698.0 450 78.2
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 8.6e-199 697.2 465 77.2
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 1.5e-198 696.4 459 76.3
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 2.5e-198 695.7 459 76.0
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 3.3e-198 695.3 453 77.5
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 3.3e-198 695.3 450 77.1
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 4.3e-198 694.9 441 79.6
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 9.5e-198 693.7 448 77.7
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 2.1e-197 692.6 459 75.8
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 1.1e-196 690.3 459 75.8
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 1.4e-196 689.9 429 81.4
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 3.1e-196 688.7 451 75.6
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 4.0e-196 688.3 464 74.8
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 1.5e-195 686.4 439 78.6
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 1.5e-195 686.4 450 75.8
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 2.6e-195 685.6 446 78.3
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 3.4e-195 685.3 487 72.3
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 3.4e-195 685.3 449 77.3
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 4.4e-195 684.9 465 75.3
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 7.5e-195 684.1 449 76.4
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 7.5e-195 684.1 457 74.4
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 9.8e-195 683.7 450 76.9
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 4.9e-194 681.4 453 75.5
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 1.1e-193 680.2 446 77.4
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 1.4e-193 679.9 458 74.0
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 2.4e-193 679.1 462 73.8
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 3.2e-193 678.7 450 75.1
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 3.2e-193 678.7 450 74.4
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 5.4e-193 677.9 458 73.8
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 5.4e-193 677.9 450 74.9
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 1.0e-191 673.7 464 72.8
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 1.7e-191 672.9 458 73.1
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 1.7e-191 672.9 457 73.3
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 3.9e-191 671.8 450 75.1
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 1.5e-190 669.8 465 73.8
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 1.9e-190 669.5 516 68.2
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 2.5e-190 669.1 450 74.2
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 4.3e-190 668.3 448 74.1
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 7.3e-190 667.5 450 74.2
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 3.6e-189 665.2 450 73.8
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 3.6e-189 665.2 446 74.7
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 3.6e-189 665.2 449 75.1
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 4.7e-189 664.8 457 72.9
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 6.2e-189 664.5 448 73.7
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 8.1e-189 664.1 460 73.0
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 1.1e-188 663.7 450 74.7
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 1.4e-188 663.3 446 74.7
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 2.3e-188 662.5 444 75.0
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 5.2e-188 661.4 448 73.4
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 6.8e-188 661.0 445 75.1
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 1.2e-187 660.2 448 73.2
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 2.6e-187 659.1 448 73.0
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 2.6e-187 659.1 448 73.0
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 3.4e-187 658.7 451 73.6
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 3.4e-187 658.7 451 73.6
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 8.3e-186 654.1 459 73.0
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 5.4e-185 651.4 408 81.1
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 5.4e-185 651.4 466 71.0
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 1.2e-184 650.2 445 74.2
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 3.5e-184 648.7 440 74.8
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 4.6e-184 648.3 450 73.1
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 4.6e-184 648.3 422 78.0
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 1.7e-183 646.4 446 73.3
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 1.2e-181 640.2 441 73.7
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 1.8e-180 636.3 450 71.3
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 2.4e-180 636.0 451 71.4
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 1.2e-179 633.6 451 71.0
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 3.4e-179 632.1 451 71.6
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 3.8e-178 628.6 428 73.8
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 1.1e-177 627.1 409 78.5
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.1e-177 627.1 516 64.5
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 4.6e-176 621.7 450 69.6
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 3.3e-174 615.5 439 71.1
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 1.4e-172 610.1 452 69.7
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 2.4e-172 609.4 409 75.8
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 1.3e-170 603.6 450 68.2
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 2.2e-170 602.8 441 70.1
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 1.2e-168 597.0 462 67.3
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 2.7e-168 595.9 441 71.4
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 1.3e-167 593.6 446 68.2
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 1.6e-165 586.6 456 64.3
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 6.9e-164 581.3 445 64.5
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 1.7e-162 576.6 414 71.3
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 1.4e-161 573.5 400 74.2
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 5.1e-159 565.1 385 74.0
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 4.9e-154 548.5 455 65.7
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 3.5e-152 542.3 375 74.7
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 7.9e-152 541.2 376 73.4
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 5.1e-151 538.5 379 72.0
Cc01_g10730 Coffea canephora HOM05D004460 ORTHO05D005254 2.8e-149 532.7 292 88.4
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 2.5e-145 519.6 448 59.2
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 2.7e-144 516.2 417 65.7
CARHR150840 Cardamine hirsuta HOM05D004460 ORTHO05D005254 4.2e-137 492.3 282 85.1
Psat7g112240 Pisum sativum HOM05D004460 ORTHO05D005254 2.7e-136 489.6 280 85.7
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 1.7e-133 480.3 335 73.7
AagrBONN_evm.TU.Sc2ySwM_344.3907 Anthoceros agrestis HOM05D004460 ORTHO05D005254 3.3e-126 456.1 369 64.2
SEGI_40785 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 1.4e-119 434.1 259 83.0
Sabra16G0128800 Salix brachista HOM05D004460 ORTHO05D005254 1.8e-119 433.7 235 88.9
Peaxi162Scf00073g01829 Petunia axillaris HOM05D004460 ORTHO05D005254 5.3e-116 422.2 232 87.9
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 1.7e-114 417.2 368 63.9
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 2.9e-114 416.4 464 48.9
VMungo0251G0290 Vigna mungo HOM05D004460 ORTHO05D005254 8.3e-109 398.3 227 83.7
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 2.9e-106 389.8 470 45.5
arahy.Tifrunner.gnm1.ann1.TK1EDX Arachis hypogaea HOM05D004460 ORTHO05D005254 5.0e-106 389.0 249 80.7
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 7.2e-105 385.2 505 44.0
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 1.1e-100 371.3 291 69.8
Lj4A675G47 Lonicera japonica HOM05D004460 ORTHO05D005254 1.6e-99 367.5 225 83.6
Lj4A665T31 Lonicera japonica HOM05D004460 ORTHO05D005254 5.2e-95 352.4 196 87.2
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 5.7e-94 349.0 310 60.0
Haze_27141 Corylus avellana HOM05D004460 ORTHO05D005254 6.3e-93 345.5 451 42.8
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 2.4e-92 343.6 333 60.4
arahy.Tifrunner.gnm1.ann1.XS4KTC Arachis hypogaea HOM05D004460 ORTHO05D005254 3.1e-87 326.6 183 83.6
arahy.Tifrunner.gnm1.ann1.X9KU0H Arachis hypogaea HOM05D004460 ORTHO05D005254 2.2e-85 320.5 213 76.1
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 1.1e-81 308.1 293 58.7
PRCOL_00000052 Prasinoderma coloniale HOM05D004460 ORTHO05D005254 1.4e-79 301.2 481 38.5
Hma1.2p1_1786F.1_g302290 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 1.9e-76 290.8 220 70.0
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 6.4e-69 265.8 334 50.6
MSTRG.17732 Avicennia marina HOM05D004460 ORTHO05D005254 4.0e-63 246.5 140 82.1
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 6.4e-61 239.2 229 56.8
arahy.Tifrunner.gnm1.ann1.U8K6WM Arachis hypogaea HOM05D004460 ORTHO05D005254 1.6e-51 208.0 199 54.8
C02p00470 Brassica napus HOM05D004460 ORTHO05D005254 2.3e-50 204.1 208 54.3
HPP92_027906 Vanilla planifolia HOM05D004460 ORTHO05D005254 7.9e-43 179.1 245 47.8
Cc01_g10740 Coffea canephora HOM05D004460 ORTHO05D005254 1.3e-42 178.3 124 71.0
Glyma.20G052400 Glycine max HOM05D004460 ORTHO05D005254 3.9e-42 176.8 125 70.4
BcaC03g13060 Brassica carinata HOM05D004460 ORTHO05D005254 8.2e-32 142.5 115 60.0
C02p00480 Brassica napus HOM05D004460 ORTHO05D005254 8.2e-32 142.5 115 60.0
Psat3g055640 Pisum sativum HOM05D004460 ORTHO05D005254 4.2e-28 130.2 78 75.6
Psat6g225840 Pisum sativum HOM05D004460 ORTHO05D005254 3.3e-25 120.6 80 67.5
VMungo0251G0332 Vigna mungo HOM05D004460 ORTHO05D005254 5.7e-25 119.8 191 41.9
CAN.G567.62 Capsicum annuum HOM05D004460 ORTHO05D005254 4.1e-23 113.6 102 61.8
MD03G1005100 Malus domestica HOM05D004460 ORTHO05D005254 6.9e-23 112.8 57 89.5
SEGI_00213 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 2.0e-22 111.3 76 65.8
Medtr2g047140 Medicago truncatula HOM05D004460 ORTHO05D005254 1.3e-21 108.6 70 71.4
Carub.0004s0823 Capsella rubella HOM05D004460 ORTHO05D005254 3.8e-21 107.1 74 75.7
Psat7g055560 Pisum sativum HOM05D004460 ORTHO05D005254 9.7e-17 92.4 117 45.3
HPP92_024473 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.4e-15 88.6 56 82.1
FAN23G3015 Fragaria x ananassa HOM05D004460 ORTHO05D005254 4.2e-12 77.0 42 78.6
AT1G73160 Arabidopsis thaliana HOM05D002124 ORTHO05D004058 6.7e-10 69.7 296 26.7
AL2G32910 Arabidopsis lyrata HOM05D002124 ORTHO05D004058 8.2e-08 62.8 292 24.0
THA.LOC104812201 Tarenaya hassleriana HOM05D002124 ORTHO05D004058 7.0e-07 59.7 292 25.0
Nn1g09042 Nelumbo nucifera HOM05D002124 ORTHO05D004058 1.6e-06 58.5 289 25.3


User provided reference genes

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