Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 0.0e+00 1451.4 1012 100.0
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 0.0e+00 1077.4 1027 78.1
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 3.3e-280 968.8 963 78.8
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 5.5e-267 924.9 944 72.7
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 1.7e-263 913.3 949 77.9
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 7.2e-259 897.9 1017 72.0
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 5.2e-249 865.1 920 72.5
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 4.8e-247 858.6 921 71.9
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.6e-245 852.8 922 76.1
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 9.4e-243 844.3 915 76.4
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 2.0e-240 836.6 946 71.0
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 1.3e-239 833.9 1032 66.1
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.7e-239 833.6 930 69.0
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 1.1e-238 830.9 944 72.0
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.5e-235 820.5 1027 67.6
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 7.2e-235 818.1 825 80.6
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 4.7e-234 815.5 902 74.6
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.7e-232 808.5 915 72.9
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 8.3e-231 804.7 1030 63.8
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 7.0e-230 801.6 957 70.0
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 3.5e-229 799.3 939 71.7
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 2.9e-228 796.2 987 67.4
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 4.2e-227 792.3 931 69.3
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 6.8e-225 785.0 915 73.4
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.0e-224 783.5 909 72.9
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 3.4e-224 782.7 915 74.0
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 5.4e-222 775.4 918 64.4
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.2e-221 774.2 914 65.3
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 6.6e-220 768.5 912 71.8
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.1e-219 767.7 912 71.8
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 3.3e-219 766.1 1049 65.0
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 4.3e-219 765.8 1031 57.7
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 4.3e-219 765.8 921 66.8
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 4.7e-218 762.3 921 66.7
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 8.0e-218 761.5 921 68.3
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 1.4e-217 760.8 918 70.6
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 1.8e-217 760.4 931 71.2
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 6.8e-217 758.4 896 70.8
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 2.0e-216 756.9 932 67.1
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 5.8e-216 755.4 838 72.3
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 7.5e-216 755.0 909 71.4
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 4.1e-214 749.2 957 69.5
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 5.4e-214 748.8 909 70.4
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 7.0e-214 748.4 957 69.6
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.2e-213 747.7 1026 65.2
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 2.7e-213 746.5 894 72.0
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 4.6e-213 745.7 832 75.1
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 5.0e-212 742.3 934 68.7
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 1.5e-211 740.7 939 69.6
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 1.5e-211 740.7 901 71.9
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 2.1e-210 736.9 828 75.1
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 1.4e-209 734.2 826 76.0
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 2.3e-209 733.4 963 61.9
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.0e-209 732.6 921 69.1
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 6.8e-209 731.9 918 69.2
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.2e-208 731.1 896 70.3
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 2.6e-208 729.9 950 68.6
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 3.4e-208 729.6 914 69.0
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 1.7e-207 727.2 883 67.8
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 4.9e-207 725.7 912 70.1
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 8.3e-207 724.9 909 69.2
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 4.1e-206 722.6 888 70.2
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 7.0e-206 721.8 915 69.8
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 1.6e-205 720.7 919 69.9
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 6.0e-205 718.8 918 68.3
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 1.3e-204 717.6 895 68.4
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 1.7e-204 717.2 942 68.9
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 1.7e-204 717.2 846 72.1
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 3.0e-204 716.5 904 68.8
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 5.1e-204 715.7 955 67.5
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 2.5e-203 713.4 888 69.1
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 4.3e-203 712.6 919 69.3
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 4.7e-202 709.1 910 65.1
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 1.4e-201 707.6 909 68.6
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 1.2e-200 704.5 828 73.7
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 7.5e-200 701.8 905 67.5
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 4.9e-199 699.1 892 70.1
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 3.2e-198 696.4 935 62.4
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 2.7e-197 693.3 904 68.5
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 1.3e-196 691.0 1009 63.6
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 7.3e-195 685.3 928 67.0
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 2.4e-193 680.2 817 71.7
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.2e-192 677.9 808 74.6
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 2.6e-192 676.8 835 62.9
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 3.4e-192 676.4 814 70.5
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 1.3e-191 674.5 925 66.5
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 1.7e-191 674.1 894 67.4
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 1.7e-191 674.1 862 66.8
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 2.2e-191 673.7 909 65.0
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 8.4e-191 671.8 927 61.4
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 6.0e-189 665.6 906 66.2
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 1.7e-188 664.1 1032 59.9
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 2.3e-188 663.7 792 72.7
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 5.6e-187 659.1 908 65.5
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 2.8e-186 656.8 958 60.8
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 6.2e-186 655.6 903 65.3
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 1.1e-185 654.8 757 72.7
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 1.8e-185 654.1 888 66.4
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 2.6e-184 650.2 908 65.1
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 2.7e-181 640.2 914 61.9
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 6.0e-181 639.0 980 59.8
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 6.6e-180 635.6 907 64.6
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 2.1e-178 630.6 846 65.7
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 2.8e-178 630.2 831 67.4
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 3.6e-178 629.8 831 69.9
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 4.8e-178 629.4 995 57.8
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 8.1e-178 628.6 903 64.6
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 1.8e-177 627.5 909 62.9
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 2.4e-177 627.1 936 63.2
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 1.5e-176 624.4 928 63.0
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 2.0e-176 624.0 905 64.2
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.0e-176 624.0 807 68.8
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 3.4e-176 623.2 902 64.3
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 3.4e-176 623.2 1018 58.8
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 3.2e-174 616.7 902 64.1
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.0e-172 611.7 887 62.5
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 1.8e-172 610.9 913 63.4
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 2.3e-172 610.5 901 56.3
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 1.3e-170 604.7 918 63.9
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 2.8e-170 603.6 903 63.3
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 3.0e-164 583.6 899 58.4
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 5.6e-163 579.3 895 57.5
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 5.6e-163 579.3 792 65.2
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 9.6e-163 578.6 895 57.4
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 9.6e-163 578.6 895 57.4
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 4.0e-161 573.2 743 72.5
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 3.4e-160 570.1 937 59.4
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 3.8e-159 566.6 806 61.8
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 2.7e-157 560.5 880 54.7
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 5.1e-156 556.2 847 55.3
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.4e-153 547.4 742 63.7
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 5.9e-152 542.7 1007 50.0
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 3.8e-151 540.0 804 64.9
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 5.0e-151 539.7 687 75.7
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 6.5e-151 539.3 940 58.4
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 2.1e-149 534.3 901 55.7
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 7.9e-149 532.3 901 55.9
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 1.1e-147 528.5 895 56.6
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 1.5e-147 528.1 903 56.1
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.8e-146 523.9 653 78.7
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.0e-143 515.4 688 65.7
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 2.0e-139 501.1 903 55.0
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 9.7e-139 498.8 782 50.3
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 1.2e-136 491.9 724 63.7
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 4.5e-128 463.4 905 52.4
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.1e-126 458.8 925 50.3
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 6.3e-122 443.0 802 54.6
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.5e-120 437.2 878 47.4
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 5.2e-116 423.3 675 58.8
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 4.4e-115 420.2 546 66.7
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.4e-113 415.2 867 55.2
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 9.5e-110 402.5 646 72.1
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 1.4e-108 398.7 944 35.1
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 8.3e-106 389.4 934 44.2
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 2.2e-98 364.8 950 47.5
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 3.0e-95 354.4 464 51.1
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.5e-91 342.0 397 61.5
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 9.8e-91 339.3 747 49.5
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 1.7e-90 338.6 652 58.0
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 2.1e-85 321.6 1297 29.3
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 2.0e-83 315.1 632 60.1
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 1.1e-81 309.3 480 46.2
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 5.4e-73 280.4 273 67.4
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 3.0e-71 274.6 332 51.2
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 1.1e-68 266.2 311 80.7
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 1.5e-54 219.2 154 74.7
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 8.4e-50 203.4 234 50.4
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.6e-32 144.4 219 42.5
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 3.1e-28 131.7 88 77.3
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 1.2e-27 129.8 89 75.3
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 2.9e-26 125.2 120 59.2
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 1.0e-23 116.7 108 53.7
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 7.7e-19 100.5 66 80.3
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 8.8e-15 87.0 239 68.6
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 3.8e-10 71.6 82 45.1
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 3.6e-08 65.1 206 26.7
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 1.0e-07 63.5 194 29.9


User provided reference genes

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