Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0062400 Rhododendron simsii HOM05D006703 ORTHO05D008389 7.7e-169 597.0 298 100.0
Actinidia37767 Actinidia chinensis HOM05D006703 ORTHO05D008389 2.5e-74 283.1 199 75.9
vmacro07494 Vaccinium macrocarpon HOM05D006703 ORTHO05D008389 7.2e-74 281.6 314 56.4
Hma1.2p1_0401F.1_g144790 Hydrangea macrophylla HOM05D006703 ORTHO05D008389 3.8e-67 259.2 196 69.4
MELO3C009564.2 Cucumis melo HOM05D006703 ORTHO05D008389 8.5e-59 231.5 199 61.8
HanXRQChr02g0052921 Helianthus annuus HOM05D006703 ORTHO05D008389 1.2e-57 227.6 195 58.5
DCAR_013453 Daucus carota HOM05D006703 ORTHO05D008389 2.3e-56 223.4 194 58.8
Lj1A1058G53 Lonicera japonica HOM05D006703 ORTHO05D008389 2.3e-56 223.4 204 63.7
GSVIVG01022605001 Vitis vinifera HOM05D006703 ORTHO05D008389 2.3e-56 223.4 199 61.8
TAR636G3193 Trochodendron aralioides HOM05D004977 ORTHO05D006454 3.0e-56 223.0 192 60.4
FAN05G3633 Fragaria x ananassa HOM05D006703 ORTHO05D008389 5.2e-56 222.2 197 61.4
FAN05G2374 Fragaria x ananassa HOM05D006703 ORTHO05D008389 6.7e-56 221.9 197 61.4
Nitab4.5_0001918g0020 Nicotiana tabacum HOM05D006703 ORTHO05D008389 6.7e-56 221.9 205 58.0
ECA233G5710 Erigeron canadensis HOM05D006703 ORTHO05D008389 8.8e-56 221.5 209 58.4
CsaV3_3G038210 Cucumis sativus L. HOM05D006703 ORTHO05D008389 2.0e-55 220.3 198 58.6
Nitab4.5_0000721g0180 Nicotiana tabacum HOM05D006703 ORTHO05D008389 2.6e-55 219.9 205 57.6
RcHm_v2.0_Chr3g0477081 Rosa chinensis HOM05D006703 ORTHO05D008389 3.3e-55 219.5 196 60.7
FAN09G4763 Fragaria x ananassa HOM05D006703 ORTHO05D008389 4.4e-55 219.2 197 61.4
ClCG10G018080 Citrullus lanatus HOM05D006703 ORTHO05D008389 7.5e-55 218.4 197 59.4
Gohir.D01G190000 Gossypium hirsutum HOM05D006703 ORTHO05D008389 6.3e-54 215.3 194 59.3
Lalb_Chr01g0017771 Lupinus albus HOM05D006703 ORTHO05D008389 6.3e-54 215.3 194 58.2
HanXRQChr13g0398671 Helianthus annuus HOM05D006703 ORTHO05D008389 1.1e-53 214.5 211 55.0
Gohir.A01G200000 Gossypium hirsutum HOM05D006703 ORTHO05D008389 1.4e-53 214.2 194 59.3
Gorai.002G233800 Gossypium raimondii HOM05D006703 ORTHO05D008389 1.8e-53 213.8 194 58.8
FvH4_6g20830 Fragaria vesca HOM05D006703 ORTHO05D008389 4.1e-53 212.6 197 59.4
FAN14G3264 Fragaria x ananassa HOM05D006703 ORTHO05D008389 4.1e-53 212.6 197 59.4
Duzib106G1644 Durio zibethinus HOM05D006703 ORTHO05D008389 7.0e-53 211.8 194 61.3
Sed0006927 Sechium edule HOM05D006703 ORTHO05D008389 9.1e-53 211.5 194 57.2
TPR.G34442 Trifolium pratense HOM05D006703 ORTHO05D008389 9.1e-53 211.5 205 58.5
Potri.016G066800 Populus trichocarpa HOM05D006703 ORTHO05D008389 2.0e-52 210.3 194 58.8
MSTRG.19329 Avicennia marina HOM05D006703 ORTHO05D008389 2.7e-52 209.9 202 55.4
Eucgr.K01914 Eucalyptus grandis HOM05D006703 ORTHO05D008389 5.9e-52 208.8 204 55.9
Prupe.7G090900 Prunus persica HOM05D006703 ORTHO05D008389 1.0e-51 208.0 197 60.4
Medtr7g106660 Medicago truncatula HOM05D006703 ORTHO05D008389 1.3e-51 207.6 199 56.3
Ca_09072_v3 Cicer arietinum L. HOM05D006703 ORTHO05D008389 1.7e-51 207.2 199 58.3
Sabra16G0068200 Salix brachista HOM05D006703 ORTHO05D008389 1.7e-51 207.2 194 56.2
TWI74G0187 Tripterygium wilfordii HOM05D006703 ORTHO05D008389 1.7e-51 207.2 212 55.7
Duzib093G0046 Durio zibethinus HOM05D006703 ORTHO05D008389 2.2e-51 206.8 201 57.7
Ah.12g059450 Amaranthus hybridus HOM05D001890 ORTHO05D003442 3.8e-51 206.1 205 54.1
Nn2g14390 Nelumbo nucifera HOM05D006703 ORTHO05D008389 3.8e-51 206.1 197 54.3
Thecc.05G108700 Theobroma cacao HOM05D006703 ORTHO05D008389 3.8e-51 206.1 194 56.7
Lj1g0009334 Lotus japonicus HOM05D006703 ORTHO05D008389 5.0e-51 205.7 203 56.2
MD12G1044300 Malus domestica HOM05D006703 ORTHO05D008389 5.0e-51 205.7 196 58.2
COL.COLO4_29515 Corchorus olitorius HOM05D006703 ORTHO05D008389 6.5e-51 205.3 194 58.2
AUR62030691 Chenopodium quinoa HOM05D006703 ORTHO05D008389 4.2e-50 202.6 201 55.2
EL10Ac5g11822 Beta vulgaris HOM05D006703 ORTHO05D008389 7.2e-50 201.8 200 54.5
RcHm_v2.0_Chr3g0477171 Rosa chinensis HOM05D006703 ORTHO05D008389 7.2e-50 201.8 196 58.7
Hund14986 Selenicereus undatus HOM05D006703 ORTHO05D008389 9.4e-50 201.4 198 53.5
MSTRG.26583 Avicennia marina HOM05D006703 ORTHO05D008389 2.1e-49 200.3 194 56.7
Hund10833 Selenicereus undatus HOM05D006703 ORTHO05D008389 8.0e-49 198.4 198 54.5
MD14G1043200 Malus domestica HOM05D006703 ORTHO05D008389 1.0e-48 198.0 196 57.7
CiPaw.09G023100 Carya illinoinensis HOM05D006703 ORTHO05D008389 1.4e-48 197.6 198 52.5
EL10Ac9g21006 Beta vulgaris HOM05D006703 ORTHO05D008389 1.8e-48 197.2 200 54.0
QL07p026854 Quercus lobata HOM05D006703 ORTHO05D008389 2.3e-48 196.8 201 54.2
VMungo1383G2242 Vigna mungo HOM05D001890 ORTHO05D003442 3.0e-48 196.4 205 54.1
Sed0010784 Sechium edule HOM05D006703 ORTHO05D008389 5.2e-48 195.7 202 53.0
Manes.08G036200 Manihot esculenta HOM05D006703 ORTHO05D008389 6.8e-48 195.3 201 55.2
TWI77G0507 Tripterygium wilfordii HOM05D006703 ORTHO05D008389 1.2e-47 194.5 201 54.2
Phvul.001G197500 Phaseolus vulgaris HOM05D006703 ORTHO05D008389 2.0e-47 193.7 195 56.9
FAN02G3199 Fragaria x ananassa HOM05D006703 ORTHO05D008389 3.4e-47 193.0 162 61.7
SGA_v2.0_scaffold31G12818 Striga asiatica HOM05D006703 ORTHO05D008389 5.7e-47 192.2 194 54.1
Migut.J00741 Erythranthe guttata HOM05D006703 ORTHO05D008389 1.7e-46 190.7 207 54.6
Cfa020082 Carpinus fangiana HOM05D006703 ORTHO05D008389 2.8e-46 189.9 197 53.3
CiPaw.10G019700 Carya illinoinensis HOM05D006703 ORTHO05D008389 8.3e-46 188.3 194 52.6
Sc22g0003150 Simmondsia chinensis HOM05D006703 ORTHO05D008389 1.1e-45 188.0 202 52.5
PGSC0003DMG400028230 Solanum tuberosum HOM05D006703 ORTHO05D008389 2.4e-45 186.8 205 51.7
Peaxi162Scf00203g00910 Petunia axillaris HOM05D006703 ORTHO05D008389 3.1e-45 186.4 177 58.2
PGR004G0398 Punica granatum HOM05D006703 ORTHO05D008389 3.1e-45 186.4 196 54.6
Glyma.03G204000 Glycine max HOM05D006703 ORTHO05D008389 4.1e-45 186.0 196 54.6
Sopen10g032260 Solanum pennellii HOM05D006703 ORTHO05D008389 4.1e-45 186.0 206 51.5
Atru.chr8.1299 Acer truncatum HOM05D006703 ORTHO05D008389 5.4e-45 185.7 170 54.7
SGA_v2.0_scaffold392G50677 Striga asiatica HOM05D006703 ORTHO05D008389 7.0e-45 185.3 202 51.0
Manes.09G042800 Manihot esculenta HOM05D006703 ORTHO05D008389 2.0e-44 183.7 195 52.3
Oeu020165.3 Olea europaea HOM05D006703 ORTHO05D008389 2.0e-44 183.7 245 48.2
Solyc10g081750.1 Solanum lycopersicum HOM05D006703 ORTHO05D008389 4.5e-44 182.6 206 50.5
arahy.Tifrunner.gnm1.ann1.8DDT0E Arachis hypogaea HOM05D006703 ORTHO05D008389 5.9e-44 182.2 208 50.5
arahy.Tifrunner.gnm1.ann1.W58RTV Arachis hypogaea HOM05D006703 ORTHO05D008389 5.9e-44 182.2 208 50.5
CANSAT64G1940 Cannabis sativa HOM05D006703 ORTHO05D008389 2.2e-43 180.3 199 51.3
Actinidia03862 Actinidia chinensis HOM05D006703 ORTHO05D008389 5.0e-43 179.1 126 76.2
Haze_20110 Corylus avellana HOM05D006703 ORTHO05D008389 5.0e-43 179.1 195 51.8
Cc06_g06870 Coffea canephora HOM05D006703 ORTHO05D008389 1.9e-42 177.2 231 47.2
Psat3g028120 Pisum sativum HOM05D006703 ORTHO05D008389 1.9e-42 177.2 198 51.0
MBI05_g29094_MAGBIO Magnolia biondii HOM05D006703 ORTHO05D008389 4.2e-42 176.0 209 48.3
Actinidia03970 Actinidia chinensis HOM05D006703 ORTHO05D008389 1.2e-41 174.5 193 56.5
PSO017G1234 Papaver somniferum HOM05D006703 ORTHO05D008389 4.7e-41 172.6 206 47.6
AT2G35900 Arabidopsis thaliana HOM05D006703 ORTHO05D008389 5.2e-40 169.1 202 47.5
Aa31LG5G21040 Aethionema arabicum HOM05D006703 ORTHO05D008389 8.8e-40 168.3 201 47.8
AUR62036335 Chenopodium quinoa HOM05D006703 ORTHO05D008389 1.2e-39 167.9 185 50.8
AL4G32000 Arabidopsis lyrata HOM05D006703 ORTHO05D008389 4.4e-39 166.0 201 46.3
Thhalv10017281m.g Eutrema salsugineum HOM05D006703 ORTHO05D008389 5.7e-39 165.6 201 47.8
Sp4g18150 Schrenkiella parvula HOM05D006703 ORTHO05D008389 9.8e-39 164.9 195 47.2
BolC4t27966H Brassica oleracea HOM05D006703 ORTHO05D008389 1.7e-38 164.1 206 49.0
BraA04t18236Z Brassica rapa HOM05D006703 ORTHO05D008389 2.8e-38 163.3 206 47.6
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 4.9e-38 162.5 132 66.7
A03p19820 Brassica napus HOM05D006703 ORTHO05D008389 6.3e-38 162.2 198 46.5
BraA03t11234Z Brassica rapa HOM05D006703 ORTHO05D008389 6.3e-38 162.2 199 47.2
BcaC02g07656 Brassica carinata HOM05D006703 ORTHO05D008389 8.3e-38 161.8 206 48.1
A04p27380 Brassica napus HOM05D006703 ORTHO05D008389 8.3e-38 161.8 206 47.6
C03p23140 Brassica napus HOM05D006703 ORTHO05D008389 1.1e-37 161.4 198 46.5
Carub.0004s1765 Capsella rubella HOM05D006703 ORTHO05D008389 3.1e-37 159.8 204 48.0
C04p64910 Brassica napus HOM05D006703 ORTHO05D008389 4.1e-37 159.5 206 47.6
THA.LOC104823512 Tarenaya hassleriana HOM05D006703 ORTHO05D008389 4.1e-37 159.5 204 45.6
ATR0697G151 Amborella trichopoda HOM05D006703 ORTHO05D008389 9.2e-37 158.3 200 47.5
BcaC01g05692 Brassica carinata HOM05D006703 ORTHO05D008389 9.2e-37 158.3 198 46.5
BolC3t14715H Brassica oleracea HOM05D006703 ORTHO05D008389 9.2e-37 158.3 198 46.5
CARHR130150 Cardamine hirsuta HOM05D006703 ORTHO05D008389 1.2e-36 157.9 196 45.9
BcaB06g28891 Brassica carinata HOM05D006703 ORTHO05D008389 1.6e-36 157.5 203 48.8
Aqoxy1G00585 Aquilegia oxysepala HOM05D006703 ORTHO05D008389 2.0e-36 157.1 205 46.3
Os01g0771200 Oryza sativa ssp. japonica HOM05D006703 ORTHO05D008389 3.5e-36 156.4 168 50.0
CDE10G0766 Ceratophyllum demersum HOM05D006703 ORTHO05D008389 2.5e-34 150.2 140 57.1
Zm00001eb151930 Zea mays HOM05D006703 ORTHO05D008389 3.6e-33 146.4 175 46.9
unitig_749.g14212 Utricularia gibba HOM05D006703 ORTHO05D008389 5.2e-32 142.5 169 48.5
Oeu045018.1 Olea europaea HOM05D006703 ORTHO05D008389 2.7e-20 103.6 84 57.1
Dinv16712 Davidia involucrata HOM05D006703 ORTHO05D008389 3.1e-16 90.1 69 65.2
Glyma.19G201366 Glycine max HOM05D006703 ORTHO05D008389 9.2e-13 78.6 123 40.7
CDE10G0313 Ceratophyllum demersum HOM05D006703 ORTHO05D001378 6.0e-12 75.9 132 40.9
SHI28311 Sapria himalayana HOM05D006703 ORTHO05D008389 6.6e-11 72.4 198 31.3
SEGI_14783 Sequoiadendron giganteum HOM05D000064 ORTHO05D008389 9.5e-10 68.6 41 65.9
SEGI_41401 Sequoiadendron giganteum HOM05D006703 ORTHO05D008389 2.3e-08 63.9 42 59.5
AagrBONN_evm.TU.Sc2ySwM_369.455 Anthoceros agrestis HOM05D006703 ORTHO05D008389 1.2e-07 61.6 141 34.8


User provided reference genes

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