Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 2.1e-152 542.3 275 100.0
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 4.4e-102 375.2 291 74.2
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 3.6e-88 328.9 275 67.6
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 3.4e-86 322.4 276 67.0
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 4.0e-79 298.9 279 62.7
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 3.9e-74 282.3 282 58.9
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 3.9e-74 282.3 283 57.6
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 1.1e-73 280.8 277 57.0
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 3.3e-73 279.3 286 58.7
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 3.3e-73 279.3 277 56.7
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 4.7e-72 275.4 298 55.7
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 8.1e-72 274.6 280 56.4
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 1.1e-71 274.2 276 56.2
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 1.1e-71 274.2 218 68.8
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 1.4e-71 273.9 280 59.3
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 3.1e-71 272.7 212 68.9
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 4.0e-71 272.3 285 55.1
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 5.2e-71 271.9 278 57.2
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 8.9e-71 271.2 192 72.9
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 8.9e-71 271.2 226 64.2
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 1.2e-70 270.8 283 58.7
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 1.2e-70 270.8 278 57.2
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 1.2e-70 270.8 218 67.9
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 3.4e-70 269.2 273 56.0
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 5.8e-70 268.5 272 57.4
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 7.6e-70 268.1 193 74.1
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 7.6e-70 268.1 284 58.5
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 1.7e-69 266.9 216 65.7
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 3.8e-69 265.8 248 57.7
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 6.4e-69 265.0 273 56.0
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 8.4e-69 264.6 178 75.3
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 1.9e-68 263.5 213 64.3
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 1.9e-68 263.5 275 57.8
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 2.4e-68 263.1 261 57.1
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 3.2e-68 262.7 280 55.4
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 4.2e-68 262.3 273 55.7
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 4.2e-68 262.3 275 56.4
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 7.1e-68 261.5 295 53.9
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 9.3e-68 261.2 279 55.2
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 1.6e-67 260.4 273 54.6
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 1.6e-67 260.4 280 56.8
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 3.5e-67 259.2 217 63.6
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 4.6e-67 258.8 191 68.6
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 4.6e-67 258.8 194 66.5
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 4.6e-67 258.8 278 54.3
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 4.6e-67 258.8 296 53.4
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 1.0e-66 257.7 211 64.0
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 1.3e-66 257.3 282 54.3
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 1.3e-66 257.3 279 53.0
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 3.9e-66 255.8 284 53.2
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 3.9e-66 255.8 200 65.0
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 1.1e-65 254.2 264 55.3
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 1.9e-65 253.4 216 61.6
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 1.9e-65 253.4 283 52.7
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 2.5e-65 253.1 278 52.9
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 4.3e-65 252.3 191 66.5
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 4.3e-65 252.3 286 51.7
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 5.6e-65 251.9 283 52.3
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 5.6e-65 251.9 279 51.6
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 2.1e-64 250.0 207 62.3
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 4.8e-64 248.8 220 64.5
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 1.8e-63 246.9 205 64.4
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 4.0e-63 245.7 263 55.5
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 6.9e-63 245.0 199 64.3
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 7.6e-62 241.5 197 63.5
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 7.6e-62 241.5 226 56.6
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 1.3e-61 240.7 291 52.9
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 2.9e-61 239.6 192 65.6
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 1.1e-60 237.7 181 65.7
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 1.4e-60 237.3 154 82.5
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 5.4e-60 235.3 192 62.5
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 7.1e-60 235.0 201 59.7
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 2.1e-59 233.4 274 50.0
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 7.9e-59 231.5 215 54.4
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 1.3e-58 230.7 192 60.4
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 1.7e-58 230.3 199 58.8
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 5.1e-58 228.8 191 60.7
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 2.5e-57 226.5 203 60.1
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 3.3e-57 226.1 191 60.2
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 5.6e-57 225.3 223 56.5
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 7.3e-57 224.9 191 57.6
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 9.6e-57 224.6 215 54.4
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 4.8e-56 222.2 294 46.9
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 3.1e-55 219.5 213 53.1
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 5.3e-55 218.8 258 46.9
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 5.3e-55 218.8 191 56.5
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 5.3e-55 218.8 205 55.6
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 5.3e-55 218.8 261 47.9
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 9.0e-55 218.0 258 47.3
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 3.4e-54 216.1 278 50.0
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 1.7e-53 213.8 167 64.7
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 3.8e-53 212.6 155 70.3
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 1.1e-52 211.1 203 59.1
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 1.9e-52 210.3 264 50.4
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 9.3e-52 208.0 197 61.4
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 1.3e-50 204.1 153 70.6
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 1.8e-50 203.8 307 44.6
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 1.1e-49 201.1 273 43.2
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 6.2e-48 195.3 154 66.2
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 5.3e-47 192.2 211 53.6
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 5.3e-47 192.2 177 59.9
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.2e-46 191.0 144 69.4
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 4.9e-45 185.7 162 59.9
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 1.5e-41 174.1 211 51.7
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 2.5e-41 173.3 211 46.9
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 7.4e-41 171.8 191 48.2
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 3.4e-38 162.9 279 42.7
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 2.9e-37 159.8 101 74.3
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 2.9e-37 159.8 118 67.8
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 3.5e-35 152.9 122 59.8
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 5.1e-34 149.1 199 41.7
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 8.5e-29 131.7 192 41.1
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 1.3e-21 107.8 82 68.3
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 3.8e-21 106.3 179 38.5
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 3.8e-21 106.3 179 38.5
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 4.7e-19 99.4 125 49.6
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 4.4e-17 92.8 100 58.0
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 7.4e-17 92.0 123 38.2
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 1.7e-16 90.9 163 39.3
Lalb_Chr25g0282121 Lupinus albus HOM05D001890 ORTHO05D008163 1.2e-14 84.7 103 49.5
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 1.2e-14 84.7 210 31.9
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 1.6e-14 84.3 169 32.5
Lj3C241T8 Lonicera japonica HOM05D001890 ORTHO05D008163 2.4e-07 60.5 122 36.9
Peaxi162Scf00767g00522 Petunia axillaris HOM05D001890 ORTHO05D008163 9.1e-07 58.5 192 29.2


User provided reference genes

Program Settings