Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.0e-81 304.7 150 100.0
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 7.3e-59 230.7 146 79.5
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 4.6e-53 211.5 148 69.6
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 1.3e-52 209.9 147 70.1
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 1.1e-51 206.8 147 70.1
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 1.1e-51 206.8 140 71.4
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 4.3e-51 204.9 139 72.7
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 4.3e-51 204.9 148 69.6
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 7.3e-51 204.1 140 71.4
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 1.2e-50 203.4 147 69.4
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 2.1e-50 202.6 141 70.9
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 4.7e-50 201.4 147 68.0
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 6.2e-50 201.1 148 67.6
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.1e-49 200.3 137 71.5
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 1.4e-49 199.9 143 69.2
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.4e-49 199.9 141 68.8
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 3.1e-49 198.7 140 67.9
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 3.1e-49 198.7 148 66.9
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 6.9e-49 197.6 140 69.3
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 6.9e-49 197.6 142 69.0
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 2.0e-48 196.1 141 68.8
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 2.6e-48 195.7 146 64.4
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 1.3e-47 193.4 147 63.9
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.3e-47 193.4 147 64.6
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 1.3e-47 193.4 139 68.3
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.3e-47 193.4 140 67.9
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 1.7e-47 193.0 144 66.0
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 1.7e-47 193.0 142 68.3
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 2.9e-47 192.2 139 67.6
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 2.9e-47 192.2 139 67.6
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 6.4e-47 191.0 147 63.9
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 8.4e-47 190.7 135 69.6
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 8.4e-47 190.7 139 66.2
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 1.1e-46 190.3 147 66.7
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 1.1e-46 190.3 146 63.7
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 1.4e-46 189.9 139 68.3
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 1.9e-46 189.5 139 67.6
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 4.2e-46 188.3 141 67.4
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 4.2e-46 188.3 147 64.6
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 5.4e-46 188.0 139 67.6
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 7.1e-46 187.6 146 64.4
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 7.1e-46 187.6 139 66.2
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 7.1e-46 187.6 139 66.2
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 7.1e-46 187.6 139 66.2
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 7.1e-46 187.6 147 63.9
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.2e-45 186.8 148 62.2
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 1.2e-45 186.8 147 61.2
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 1.6e-45 186.4 145 63.4
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 1.6e-45 186.4 139 67.6
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.6e-45 186.4 147 61.9
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 2.7e-45 185.7 147 62.6
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.0e-44 183.7 147 61.9
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 1.0e-44 183.7 136 66.9
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.0e-44 183.7 136 66.2
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.0e-44 183.7 139 65.5
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.3e-44 183.3 147 62.6
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 1.7e-44 183.0 145 62.8
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.7e-44 183.0 139 64.7
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 3.0e-44 182.2 139 65.5
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 3.9e-44 181.8 147 59.2
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 3.9e-44 181.8 138 65.2
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 5.1e-44 181.4 135 67.4
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 6.6e-44 181.0 143 61.5
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 8.7e-44 180.6 147 61.9
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 8.7e-44 180.6 146 60.3
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.5e-43 179.9 139 64.0
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 1.9e-43 179.5 147 61.9
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.5e-43 179.1 139 64.7
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 3.3e-43 178.7 140 66.4
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 2.8e-42 175.6 134 65.7
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.6e-42 175.3 139 62.6
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 3.6e-42 175.3 139 62.6
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 3.6e-42 175.3 134 64.9
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 4.8e-42 174.9 142 63.4
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 4.8e-42 174.9 134 64.9
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.8e-41 172.9 123 69.9
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.4e-41 172.6 139 61.2
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 2.4e-41 172.6 134 66.4
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 3.1e-41 172.2 134 62.7
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 3.1e-41 172.2 136 61.8
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 4.0e-41 171.8 148 59.5
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 9.0e-41 170.6 134 65.7
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.5e-40 169.9 139 59.7
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 5.8e-40 167.9 134 64.2
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 5.8e-40 167.9 137 60.6
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 7.6e-40 167.5 140 59.3
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 7.6e-40 167.5 141 58.9
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 9.9e-40 167.2 136 62.5
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.2e-39 166.0 142 60.6
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.8e-39 165.2 145 56.6
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 6.4e-39 164.5 134 62.7
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 8.4e-39 164.1 141 56.0
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 8.4e-39 164.1 135 63.7
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.1e-38 163.7 134 62.7
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 1.9e-38 162.9 134 64.2
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 1.9e-38 162.9 141 55.3
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 4.2e-38 161.8 143 57.3
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 4.2e-38 161.8 135 57.0
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 5.4e-38 161.4 142 59.2
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 5.4e-38 161.4 129 62.0
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 7.1e-38 161.0 136 61.8
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 1.2e-37 160.2 143 57.3
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 2.1e-37 159.5 142 59.9
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 2.7e-37 159.1 129 60.5
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 3.5e-37 158.7 141 58.9
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 3.5e-37 158.7 136 54.4
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 4.6e-37 158.3 134 59.0
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 4.6e-37 158.3 141 53.9
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 1.0e-36 157.1 143 55.9
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.8e-36 156.4 126 62.7
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 1.8e-36 156.4 143 56.6
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 5.1e-36 154.8 134 57.5
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 5.1e-36 154.8 133 57.1
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 8.7e-36 154.1 139 57.6
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 8.7e-36 154.1 134 59.0
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 2.5e-35 152.5 142 55.6
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 2.1e-34 149.4 136 55.1
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 3.7e-34 148.7 137 55.5
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.8e-34 148.3 77 96.1
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.8e-34 148.3 77 96.1
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 6.2e-34 147.9 138 55.1
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 6.2e-34 147.9 137 57.7
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 6.2e-34 147.9 143 51.0
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 1.1e-33 147.1 138 54.3
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 1.1e-33 147.1 138 54.3
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.1e-33 147.1 121 61.2
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 1.1e-33 147.1 129 57.4
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.8e-33 146.4 138 54.3
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.8e-33 146.4 138 54.3
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.8e-33 146.4 138 54.3
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 1.8e-33 146.4 135 53.3
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 2.4e-33 146.0 138 54.3
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 2.4e-33 146.0 135 53.3
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 4.0e-33 145.2 137 54.7
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 6.9e-33 144.4 135 54.1
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 6.9e-33 144.4 135 52.6
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 1.2e-32 143.7 138 53.6
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.5e-32 143.3 135 55.6
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 1.5e-32 143.3 134 53.0
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 3.4e-32 142.1 140 52.9
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 4.5e-32 141.7 138 54.3
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 4.5e-32 141.7 138 54.3
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 5.8e-32 141.4 137 55.5
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 9.9e-32 140.6 139 54.7
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 3.8e-31 138.7 133 51.9
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 1.4e-30 136.7 138 52.2
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 1.4e-30 136.7 135 57.0
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.9e-30 136.3 143 51.0
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.9e-30 136.3 138 50.7
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 1.9e-30 136.3 133 51.9
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 7.1e-30 134.4 143 51.0
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 2.1e-29 132.9 137 51.1
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 2.7e-29 132.5 143 49.0
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 3.5e-29 132.1 137 50.4
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 7.9e-29 131.0 137 51.8
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 1.0e-28 130.6 136 52.2
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.8e-28 129.8 139 51.1
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 7.4e-27 124.4 116 55.2
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.4e-25 119.4 133 47.4
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 7.6e-24 114.4 66 78.8
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 3.2e-22 109.0 102 55.9
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 4.6e-21 105.1 62 79.0
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 6.0e-21 104.8 59 79.7
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 4.3e-19 98.6 61 78.7
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 9.7e-19 97.4 64 73.4
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 8.2e-18 94.4 97 54.6
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 8.2e-18 94.4 53 77.4
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 1.1e-17 94.0 61 72.1
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 5.0e-15 85.1 70 62.9
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 8.5e-15 84.3 69 55.1
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.1e-14 84.0 53 73.6
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 7.2e-14 81.3 53 71.7
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.6e-13 80.1 61 63.9
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 4.6e-13 78.6 127 34.6
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 7.4e-11 71.2 136 33.8
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 4.8e-10 68.6 68 57.4
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.6e-08 62.8 60 51.7
arahy.Tifrunner.gnm1.ann1.P0I4D3 Arachis hypogaea HOM05D003887 ORTHO05D004523 9.4e-06 54.3 36 69.4


User provided reference genes

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