Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 9.8e-138 493.4 244 100.0
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 4.2e-104 381.7 244 79.1
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 4.5e-98 361.7 244 75.0
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 1.9e-93 346.3 223 76.7
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 9.6e-93 344.0 235 71.5
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 2.8e-92 342.4 240 72.1
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 1.1e-91 340.5 226 73.5
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 1.4e-91 340.1 231 73.2
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 2.4e-91 339.3 240 68.8
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 5.3e-91 338.2 239 68.2
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 9.0e-91 337.4 239 68.2
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 2.6e-90 335.9 220 76.4
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 7.6e-90 334.3 234 70.9
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 7.6e-90 334.3 239 67.4
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 3.8e-89 332.0 232 72.4
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 1.4e-88 330.1 245 68.2
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 1.9e-88 329.7 245 67.3
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 1.9e-88 329.7 224 71.9
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 2.5e-88 329.3 245 67.3
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 3.2e-88 328.9 231 71.0
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 5.5e-88 328.2 230 70.0
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 7.1e-88 327.8 223 74.9
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 1.2e-87 327.0 225 71.1
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 1.2e-87 327.0 229 70.3
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 1.2e-87 327.0 218 72.5
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 1.6e-87 326.6 235 68.9
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 7.9e-87 324.3 223 71.7
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 2.3e-86 322.8 224 71.0
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 2.3e-86 322.8 227 72.2
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 3.0e-86 322.4 233 69.5
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 3.0e-86 322.4 227 70.5
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 3.9e-86 322.0 233 69.1
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 3.9e-86 322.0 224 70.5
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 3.9e-86 322.0 223 70.0
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 5.1e-86 321.6 219 73.1
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 6.7e-86 321.2 230 68.3
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 8.7e-86 320.9 223 69.5
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 1.1e-85 320.5 227 70.5
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 1.1e-85 320.5 223 68.6
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 1.5e-85 320.1 252 64.3
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 1.9e-85 319.7 223 68.2
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 2.5e-85 319.3 227 70.9
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 3.3e-85 318.9 223 70.9
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 9.7e-85 317.4 226 68.6
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 9.7e-85 317.4 224 68.3
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 3.7e-84 315.5 227 70.0
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 6.3e-84 314.7 227 70.5
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 1.4e-83 313.5 223 71.7
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 3.1e-83 312.4 227 67.0
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 4.1e-83 312.0 233 66.1
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 9.0e-83 310.8 244 65.2
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 1.2e-82 310.5 227 67.8
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 1.5e-82 310.1 213 70.0
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 5.9e-82 308.1 235 66.4
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 1.3e-81 307.0 228 70.6
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 1.7e-81 306.6 224 67.9
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 1.7e-81 306.6 224 67.9
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 2.2e-81 306.2 222 67.6
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 3.8e-81 305.4 218 68.3
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 3.8e-81 305.4 223 65.5
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.1e-80 303.9 239 63.2
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 1.4e-80 303.5 239 63.2
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 4.2e-80 302.0 222 67.1
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 4.2e-80 302.0 223 64.6
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 1.6e-79 300.1 167 92.2
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 2.1e-79 299.7 224 67.9
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 3.6e-79 298.9 237 62.0
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 3.6e-79 298.9 228 65.8
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 4.6e-79 298.5 222 64.9
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 3.0e-78 295.8 227 65.6
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 3.0e-78 295.8 226 65.5
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 3.9e-78 295.4 226 64.2
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 8.8e-78 294.3 227 64.8
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 1.5e-77 293.5 230 62.6
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 1.9e-77 293.1 230 63.5
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 3.3e-77 292.4 232 61.2
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 4.3e-77 292.0 236 62.7
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 5.7e-77 291.6 229 63.3
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 5.7e-77 291.6 226 63.7
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 1.3e-76 290.4 226 62.8
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 6.3e-76 288.1 241 61.8
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 8.2e-76 287.7 239 62.3
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 1.1e-75 287.3 226 64.2
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 1.8e-75 286.6 215 65.6
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 4.1e-75 285.4 228 64.5
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 2.6e-74 282.7 249 57.0
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 3.4e-74 282.3 228 65.4
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 4.2e-72 275.4 209 65.6
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 9.4e-72 274.2 209 65.1
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 1.0e-70 270.8 249 57.4
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 5.1e-70 268.5 228 61.4
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 4.8e-68 261.9 252 57.1
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 3.1e-67 259.2 228 63.2
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 9.1e-67 257.7 132 93.2
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.2e-65 253.1 235 57.4
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 1.1e-61 240.7 232 55.2
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 1.1e-59 234.2 199 63.8
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 1.6e-58 230.3 233 50.2
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 7.2e-56 221.5 129 77.5
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 3.3e-53 212.6 128 75.8
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 3.3e-53 212.6 128 75.8
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 5.7e-53 211.8 118 92.4
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 4.8e-52 208.8 181 60.2
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 1.1e-51 207.6 209 55.5
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.2e-50 204.1 158 65.2
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.5e-50 202.6 157 65.0
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 2.2e-49 199.9 181 58.6
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 2.3e-46 189.9 148 65.5
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 2.5e-40 169.9 104 74.0
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 3.6e-39 166.0 114 67.5
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 3.6e-39 166.0 254 37.0
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 1.4e-38 164.1 136 60.3
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 1.8e-38 163.7 150 56.7
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 1.2e-34 151.0 142 54.9
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 1.1e-32 144.4 164 47.6
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 2.1e-31 140.2 116 62.1
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 4.4e-29 132.5 77 79.2
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 9.8e-29 131.3 79 75.9
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.3e-28 131.0 78 79.5
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.9e-28 129.8 79 78.5
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.9e-28 129.0 79 77.2
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.9e-28 129.0 79 77.2
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 4.9e-28 129.0 77 76.6
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 8.3e-28 128.3 78 78.2
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 8.3e-28 128.3 78 78.2
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 8.6e-25 118.2 68 76.5
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 5.2e-22 109.0 124 53.2
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 8.9e-22 108.2 117 51.3
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 2.2e-20 103.6 66 71.2
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 2.4e-19 100.1 95 56.8
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 1.3e-17 94.4 75 62.7
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 6.6e-17 92.0 85 58.8
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 1.9e-16 90.5 95 50.5
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 7.3e-16 88.6 55 74.5
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 9.5e-16 88.2 64 64.1
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 2.1e-15 87.0 79 57.0
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 6.2e-15 85.5 82 53.7
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 1.1e-14 84.7 49 75.5
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 7.5e-13 78.6 51 68.6
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 6.4e-12 75.5 175 30.3
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 5.4e-11 72.4 147 32.0
Cre10.g418700 Chlamydomonas reinhardtii HOM05D005267 ORTHO05D006303 7.1e-11 72.0 179 27.9
SMO143G0102 Selaginella moellendorffii HOM05D005267 ORTHO05D006303 1.6e-10 70.9 165 25.5
MCO14G360 Micromonas commoda HOM05D005267 ORTHO05D006303 2.1e-10 70.5 163 27.0
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 2.7e-10 70.1 80 45.0
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 2.7e-10 70.1 174 26.4
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 4.6e-10 69.3 186 25.3
Pp3c20_11400 Physcomitrium patens HOM05D005267 ORTHO05D006303 2.3e-09 67.0 170 24.7
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 2.5e-08 63.5 130 31.5
Pp3c8_10880 Physcomitrium patens HOM05D005267 ORTHO05D006303 2.8e-07 60.1 206 22.8
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 3.1e-06 56.6 34 67.6
FvH4_6g21293 Fragaria vesca HOM05D005267 ORTHO05D006303 8.9e-06 55.1 35 68.6


User provided reference genes

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