Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 7.2e-87 323.9 171 100.0
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 2.9e-80 302.0 167 92.2
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 3.2e-58 228.8 167 71.9
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 4.7e-54 214.9 150 72.0
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 2.3e-53 212.6 163 67.5
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 4.0e-53 211.8 167 65.9
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 4.4e-52 208.4 161 65.8
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 4.4e-52 208.4 160 63.8
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 5.8e-52 208.0 160 63.8
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 2.9e-51 205.7 160 63.1
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.9e-50 203.0 156 64.7
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 4.1e-50 201.8 149 68.5
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 5.4e-50 201.4 149 67.1
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 5.4e-50 201.4 162 63.6
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 7.1e-50 201.1 164 64.0
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 9.2e-50 200.7 154 64.9
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 1.6e-49 199.9 157 63.7
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 2.1e-49 199.5 142 68.3
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.7e-49 199.1 154 64.3
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 4.6e-49 198.4 152 65.8
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 6.0e-49 198.0 148 67.6
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 1.3e-48 196.8 148 66.2
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 1.7e-48 196.4 153 66.7
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 2.3e-48 196.1 154 64.3
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 3.9e-48 195.3 168 61.9
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 5.1e-48 194.9 149 68.5
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 6.6e-48 194.5 154 65.6
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 1.1e-47 193.7 160 61.9
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 1.1e-47 193.7 148 64.2
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 1.5e-47 193.4 149 67.1
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 5.6e-47 191.4 148 66.2
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 7.3e-47 191.0 154 64.3
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 7.3e-47 191.0 116 87.1
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 7.3e-47 191.0 142 69.0
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 9.6e-47 190.7 154 63.0
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 9.6e-47 190.7 149 67.1
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 1.2e-46 190.3 155 62.6
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 1.6e-46 189.9 147 64.6
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 1.6e-46 189.9 157 61.1
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 2.1e-46 189.5 148 65.5
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 2.8e-46 189.1 168 60.7
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 3.6e-46 188.7 155 63.9
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 4.7e-46 188.3 179 56.4
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 4.7e-46 188.3 143 68.5
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 4.7e-46 188.3 148 62.8
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 6.2e-46 188.0 168 60.1
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 8.1e-46 187.6 145 67.6
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 1.4e-45 186.8 168 59.5
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 1.4e-45 186.8 148 64.2
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 1.8e-45 186.4 158 63.3
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 3.1e-45 185.7 160 62.5
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 4.0e-45 185.3 148 62.2
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 4.0e-45 185.3 148 62.2
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 5.2e-45 184.9 167 56.3
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 5.2e-45 184.9 150 60.7
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 5.2e-45 184.9 158 62.7
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 5.2e-45 184.9 150 60.0
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 5.2e-45 184.9 167 58.7
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 6.8e-45 184.5 154 58.4
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 6.8e-45 184.5 148 63.5
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 6.8e-45 184.5 168 58.9
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 8.9e-45 184.1 148 61.5
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 8.9e-45 184.1 150 61.3
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 8.9e-45 184.1 148 60.8
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 2.0e-44 183.0 143 64.3
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 2.6e-44 182.6 151 64.2
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 3.4e-44 182.2 150 58.7
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 3.4e-44 182.2 168 57.7
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 3.4e-44 182.2 172 57.0
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 3.4e-44 182.2 148 62.8
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 9.9e-44 180.6 161 57.1
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 1.3e-43 180.3 151 61.6
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 1.7e-43 179.9 148 61.5
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 2.2e-43 179.5 164 57.3
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 2.2e-43 179.5 148 61.5
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 4.9e-43 178.3 150 60.7
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 4.9e-43 178.3 148 60.8
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 4.9e-43 178.3 148 60.8
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 8.4e-43 177.6 138 63.8
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 1.4e-42 176.8 148 60.8
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 3.2e-42 175.6 153 65.4
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 3.2e-42 175.6 155 58.7
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 4.2e-42 175.3 170 58.2
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 5.4e-42 174.9 148 58.1
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 1.6e-41 173.3 154 57.8
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.6e-41 173.3 150 59.3
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 1.6e-41 173.3 148 58.1
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 3.5e-41 172.2 148 60.1
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 3.5e-41 172.2 151 59.6
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 4.6e-41 171.8 167 55.1
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 4.6e-41 171.8 148 59.5
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.3e-40 170.2 167 54.5
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 1.7e-40 169.9 154 56.5
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 3.0e-40 169.1 143 60.1
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 8.7e-40 167.5 152 59.9
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 3.3e-39 165.6 113 68.1
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 5.6e-39 164.9 174 54.0
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 1.4e-37 160.2 150 55.3
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 1.8e-37 159.8 173 52.6
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 4.0e-37 158.7 169 55.0
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 1.5e-36 156.8 168 51.2
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 2.6e-36 156.0 167 53.3
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 3.4e-36 155.6 149 55.7
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 1.7e-35 153.3 169 56.8
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 7.1e-34 147.9 156 51.9
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 7.8e-33 144.4 143 53.8
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 3.9e-32 142.1 148 46.6
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 1.1e-29 134.0 158 44.9
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 2.3e-24 116.3 69 75.4
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 1.4e-21 107.1 117 50.4
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 2.4e-21 106.3 148 39.9
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 9.0e-21 104.4 68 70.6
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 1.2e-20 104.0 54 88.9
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 1.2e-20 104.0 145 48.3
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 4.9e-19 98.6 95 55.8
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 2.1e-17 93.2 56 78.6
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 2.7e-17 92.8 54 75.9
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 1.0e-16 90.9 75 60.0
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.3e-16 90.5 50 80.0
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 3.0e-16 89.4 50 78.0
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 6.7e-16 88.2 95 49.5
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 2.5e-15 86.3 52 73.1
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 3.3e-15 85.9 64 62.5
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 5.7e-15 85.1 58 62.1
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 9.6e-15 84.3 71 57.7
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 3.4e-12 75.9 56 57.1
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 8.4e-11 71.2 41 70.7
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 1.6e-09 67.0 38 73.7
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 7.9e-09 64.7 38 71.1
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 2.5e-07 59.7 36 69.4
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 3.3e-07 59.3 157 28.7
Cre10.g418700 Chlamydomonas reinhardtii HOM05D005267 ORTHO05D006303 5.7e-07 58.5 98 32.7
FvH4_6g21293 Fragaria vesca HOM05D005267 ORTHO05D006303 3.7e-06 55.8 36 69.4


User provided reference genes

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