Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 7.0e-105 384.0 204 100.0
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 1.7e-79 299.7 164 99.4
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 4.4e-75 285.0 180 88.9
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 3.8e-74 282.0 164 92.7
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 7.1e-73 277.7 180 87.2
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 7.1e-73 277.7 180 87.2
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 2.1e-72 276.2 164 89.6
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 3.5e-72 275.4 180 85.6
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.3e-71 273.5 180 86.1
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 1.9e-70 269.6 164 87.8
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 5.6e-70 268.1 180 82.8
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 1.3e-69 266.9 180 83.3
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.3e-69 266.9 180 83.3
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 1.3e-69 266.9 180 82.2
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 1.6e-69 266.5 180 83.3
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 1.6e-69 266.5 179 83.2
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.1e-69 266.2 180 82.2
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.1e-69 266.2 180 82.2
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 2.8e-69 265.8 180 83.9
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 2.8e-69 265.8 180 82.8
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 2.8e-69 265.8 180 82.2
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 2.8e-69 265.8 180 81.7
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 3.6e-69 265.4 180 82.8
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 3.6e-69 265.4 178 81.5
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 4.8e-69 265.0 162 86.4
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 4.8e-69 265.0 180 81.1
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 4.8e-69 265.0 180 82.8
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 6.2e-69 264.6 180 81.7
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 6.2e-69 264.6 180 83.3
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 6.2e-69 264.6 180 81.7
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 6.2e-69 264.6 180 81.7
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 6.2e-69 264.6 180 81.7
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 1.1e-68 263.8 180 81.1
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 1.1e-68 263.8 180 81.1
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 1.1e-68 263.8 180 81.1
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 1.1e-68 263.8 180 81.1
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 1.1e-68 263.8 180 81.7
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 1.1e-68 263.8 180 81.7
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 1.4e-68 263.5 180 81.7
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 1.4e-68 263.5 180 82.8
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 1.4e-68 263.5 180 81.1
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 1.8e-68 263.1 180 81.7
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 1.8e-68 263.1 180 82.8
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.8e-68 263.1 180 81.7
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 2.4e-68 262.7 180 80.6
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 3.1e-68 262.3 180 81.1
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 4.0e-68 261.9 180 81.1
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 4.0e-68 261.9 180 82.2
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 4.0e-68 261.9 180 81.1
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 5.3e-68 261.5 180 80.6
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 5.3e-68 261.5 180 81.1
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.3e-68 261.5 180 81.1
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 5.3e-68 261.5 180 80.6
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 6.9e-68 261.2 180 81.1
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 9.0e-68 260.8 180 81.1
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 9.0e-68 260.8 178 81.5
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 1.5e-67 260.0 180 80.0
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 1.5e-67 260.0 180 80.0
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 2.6e-67 259.2 180 80.6
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 2.6e-67 259.2 180 81.7
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 2.6e-67 259.2 180 82.2
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 3.4e-67 258.8 180 80.0
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 3.4e-67 258.8 191 79.1
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 4.4e-67 258.5 178 79.2
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 4.4e-67 258.5 184 81.0
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 5.8e-67 258.1 178 78.7
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 5.8e-67 258.1 178 79.2
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 5.8e-67 258.1 180 78.3
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 7.6e-67 257.7 179 79.3
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 7.6e-67 257.7 180 80.0
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 7.6e-67 257.7 180 79.4
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 9.9e-67 257.3 180 79.4
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 1.3e-66 256.9 178 78.1
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 1.3e-66 256.9 178 78.1
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 1.3e-66 256.9 178 78.7
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 1.3e-66 256.9 178 78.7
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 1.3e-66 256.9 178 78.7
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 1.7e-66 256.5 178 78.1
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 1.7e-66 256.5 178 78.1
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 1.7e-66 256.5 178 78.1
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.7e-66 256.5 180 78.9
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 1.7e-66 256.5 180 78.9
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.7e-66 256.5 178 77.5
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 2.2e-66 256.1 180 80.0
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 2.2e-66 256.1 164 84.8
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 2.9e-66 255.8 179 78.8
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 2.9e-66 255.8 180 80.0
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 8.4e-66 254.2 178 77.0
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 8.4e-66 254.2 178 77.0
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 8.4e-66 254.2 178 77.0
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 8.4e-66 254.2 178 78.1
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 1.1e-65 253.8 185 76.8
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 1.1e-65 253.8 180 76.7
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 1.4e-65 253.4 178 76.4
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 1.4e-65 253.4 178 76.4
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 1.4e-65 253.4 180 78.3
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 1.9e-65 253.1 178 77.5
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.2e-65 252.3 180 77.8
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.2e-65 252.3 180 77.8
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 3.2e-65 252.3 163 85.3
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 5.4e-65 251.5 180 76.1
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 7.1e-65 251.1 180 76.7
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 9.3e-65 250.8 180 77.8
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.2e-64 250.4 179 77.1
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 1.6e-64 250.0 178 76.4
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 1.6e-64 250.0 180 77.2
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 2.1e-64 249.6 180 79.4
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 2.3e-63 246.1 180 76.7
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 3.0e-63 245.7 180 77.2
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.9e-63 245.4 180 76.7
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 3.9e-63 245.4 180 76.7
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 6.6e-63 244.6 180 76.7
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.1e-62 243.8 180 76.1
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.9e-62 243.0 180 76.1
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 9.6e-62 240.7 196 69.9
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 1.3e-61 240.4 180 72.8
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 4.8e-61 238.4 183 74.3
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 8.1e-61 237.7 164 79.3
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 1.4e-60 236.9 180 70.0
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 5.8e-59 231.5 164 79.3
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 9.9e-59 230.7 185 71.4
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 2.2e-58 229.6 164 78.7
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 4.9e-58 228.4 164 76.8
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.4e-57 226.1 180 69.4
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 4.2e-57 225.3 169 73.4
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 1.6e-56 223.4 164 78.0
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 4.6e-56 221.9 180 70.6
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 7.9e-56 221.1 180 72.2
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 7.9e-56 221.1 180 72.2
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.3e-55 220.3 180 68.3
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 5.6e-54 214.9 178 68.5
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 2.8e-53 212.6 178 64.0
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 6.2e-53 211.5 178 67.4
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 1.8e-52 209.9 178 67.4
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 3.2e-49 199.1 301 46.5
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 3.2e-49 199.1 129 83.7
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 2.1e-48 196.4 136 80.1
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 6.0e-48 194.9 113 88.5
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 7.9e-48 194.5 164 71.3
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 7.9e-48 194.5 129 81.4
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 1.0e-47 194.1 129 82.2
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.5e-46 189.5 173 62.4
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 7.4e-46 188.0 165 67.3
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 1.5e-43 180.3 180 60.0
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 2.0e-43 179.9 135 74.1
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 5.9e-43 178.3 248 53.2
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 7.6e-43 177.9 179 59.2
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 4.6e-40 168.7 114 81.6
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 6.9e-36 154.8 178 50.6
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 3.8e-34 149.1 101 82.2
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 3.8e-34 149.1 101 82.2
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 3.8e-34 149.1 101 82.2
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 3.8e-34 149.1 101 82.2
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 3.8e-34 149.1 101 82.2
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 1.9e-33 146.7 108 66.7
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 6.1e-32 141.7 182 48.4
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 5.9e-27 125.2 106 61.3
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 6.7e-23 111.7 87 63.2
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 1.5e-22 110.5 178 39.3
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.1e-20 102.8 63 90.5
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.1e-20 102.8 74 79.7
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 3.5e-19 99.4 175 41.7
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.9e-18 96.3 68 79.4
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 7.2e-17 91.7 70 64.3
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 7.2e-17 91.7 70 64.3
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 4.4e-06 55.8 29 89.7


User provided reference genes

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