Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0040100 Rhododendron simsii HOM05D005831 ORTHO05D007007 6.6e-183 644.0 356 100.0
vmacro07801 Vaccinium macrocarpon HOM05D005831 ORTHO05D007007 9.3e-153 543.9 341 85.3
CSS0021293 Camellia sinensis var. sinensis HOM05D005831 ORTHO05D007007 5.4e-137 491.5 342 79.2
Actinidia25695 Actinidia chinensis HOM05D005831 ORTHO05D007007 5.3e-132 474.9 341 75.4
GSVIVG01035453001 Vitis vinifera HOM05D005831 ORTHO05D007007 1.3e-125 453.8 336 70.8
Hma1.2p1_0231F.1_g097400 Hydrangea macrophylla HOM05D005831 ORTHO05D007007 2.6e-123 446.0 359 68.8
TAR383G0824 Trochodendron aralioides HOM05D005831 ORTHO05D007007 1.3e-122 443.7 300 78.0
COL.COLO4_21126 Corchorus olitorius HOM05D005831 ORTHO05D007007 2.9e-122 442.6 335 69.0
Thecc.09G062000 Theobroma cacao HOM05D005831 ORTHO05D007007 2.9e-122 442.6 341 69.2
CiPaw.15G092600 Carya illinoinensis HOM05D005831 ORTHO05D007007 1.9e-121 439.9 343 68.2
Cfa018014 Carpinus fangiana HOM05D005831 ORTHO05D007007 2.5e-121 439.5 342 68.4
QL04p096581 Quercus lobata HOM05D005831 ORTHO05D007007 3.2e-121 439.1 332 70.2
Potri.006G222000 Populus trichocarpa HOM05D005831 ORTHO05D007007 2.7e-120 436.0 335 69.9
Duzib150G1275 Durio zibethinus HOM05D005831 ORTHO05D007007 1.8e-119 433.3 336 68.5
MBI19_g11845_MAGBIO Magnolia biondii HOM05D005831 ORTHO05D007007 3.0e-119 432.6 307 73.0
PGR004G2090 Punica granatum HOM05D005831 ORTHO05D007007 3.0e-119 432.6 306 72.9
CANSAT25G0005 Cannabis sativa HOM05D005831 ORTHO05D007007 5.1e-119 431.8 343 67.3
Gorai.001G020700 Gossypium raimondii HOM05D005831 ORTHO05D007007 4.3e-118 428.7 306 72.9
Nn8g38706 Nelumbo nucifera HOM05D005831 ORTHO05D007007 1.3e-117 427.2 308 72.4
Prupe.1G405700 Prunus persica HOM05D005831 ORTHO05D007007 1.3e-117 427.2 339 70.2
MD08G1070400 Malus domestica HOM05D005831 ORTHO05D007007 1.6e-117 426.8 334 67.4
PSO210G7793 Papaver somniferum HOM05D005831 ORTHO05D007007 1.6e-117 426.8 308 71.8
MSTRG.25981 Avicennia marina HOM05D005831 ORTHO05D007007 2.2e-117 426.4 306 72.2
Ciclev10025877m.g Citrus clementina HOM05D005831 ORTHO05D007007 2.2e-117 426.4 306 72.9
PSO210G0521 Papaver somniferum HOM05D005831 ORTHO05D007007 2.2e-117 426.4 308 71.8
Cc08_g01270 Coffea canephora HOM05D005831 ORTHO05D007007 8.2e-117 424.5 306 72.2
Aqoxy3G01546 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 1.1e-116 424.1 308 70.8
Eucgr.C03149 Eucalyptus grandis HOM05D005831 ORTHO05D007007 1.4e-116 423.7 306 70.3
Sed0012871 Sechium edule HOM05D005831 ORTHO05D007007 4.1e-116 422.2 329 67.5
RcHm_v2.0_Chr6g0311631 Rosa chinensis HOM05D005831 ORTHO05D007007 5.3e-116 421.8 336 70.5
DCAR_003715 Daucus carota HOM05D005831 ORTHO05D007007 1.2e-115 420.6 307 70.4
Manes.03G052700 Manihot esculenta HOM05D005831 ORTHO05D007007 1.5e-115 420.2 335 66.9
HanXRQChr12g0359011 Helianthus annuus HOM05D005831 ORTHO05D007007 2.0e-115 419.9 306 70.6
FvH4_2g31140 Fragaria vesca HOM05D005831 ORTHO05D007007 2.6e-115 419.5 336 66.7
FAN24G1737 Fragaria x ananassa HOM05D005831 ORTHO05D007007 2.6e-115 419.5 336 66.7
Gohir.D07G020000 Gossypium hirsutum HOM05D005831 ORTHO05D007007 2.6e-115 419.5 316 70.3
Cpa.g.sc126.34 Carica papaya HOM05D005831 ORTHO05D007007 5.9e-115 418.3 307 70.0
MD15G1051800 Malus domestica HOM05D005831 ORTHO05D007007 7.7e-115 417.9 339 66.7
ECA234G1597 Erigeron canadensis HOM05D005831 ORTHO05D007007 1.3e-114 417.2 306 69.9
Lsat_1_v5_gn_5_79500 Lactuca sativa HOM05D005831 ORTHO05D007007 2.2e-114 416.4 308 69.8
Medtr1g015390 Medicago truncatula HOM05D005831 ORTHO05D007007 2.9e-114 416.0 301 70.4
ClCG05G015690 Citrullus lanatus HOM05D005831 ORTHO05D007007 6.5e-114 414.8 299 70.9
Nitab4.5_0000446g0240 Nicotiana tabacum HOM05D005831 ORTHO05D007007 8.5e-114 414.5 306 68.3
Dinv41837 Davidia involucrata HOM05D005831 ORTHO05D007007 1.4e-113 413.7 270 85.2
Glyma.14G099100 Glycine max HOM05D005831 ORTHO05D007007 2.5e-113 412.9 301 70.8
Haze_18115 Corylus avellana HOM05D005831 ORTHO05D007007 4.2e-113 412.1 342 66.4
Migut.A00086 Erythranthe guttata HOM05D005831 ORTHO05D007007 5.5e-113 411.8 306 69.3
CsaV3_4G036010 Cucumis sativus L. HOM05D005831 ORTHO05D007007 1.2e-112 410.6 299 70.9
VMungo0647G0599 Vigna mungo HOM05D005831 ORTHO05D007007 1.6e-112 410.2 301 70.4
PGSC0003DMG400003758 Solanum tuberosum HOM05D005831 ORTHO05D007007 2.1e-112 409.8 306 67.0
Lj5g0001901 Lotus japonicus HOM05D005831 ORTHO05D007007 3.6e-112 409.1 301 68.1
Glyma.17G225600 Glycine max HOM05D005831 ORTHO05D007007 4.6e-112 408.7 301 69.8
Sopen04g034540 Solanum pennellii HOM05D005831 ORTHO05D007007 3.9e-111 405.6 306 66.7
Carub.0004s0626 Capsella rubella HOM05D005831 ORTHO05D007007 6.7e-111 404.8 309 66.3
Oeu027284.3 Olea europaea HOM05D005831 ORTHO05D007007 6.7e-111 404.8 377 58.4
Thhalv10002014m.g Eutrema salsugineum HOM05D005831 ORTHO05D007007 1.1e-110 404.1 309 66.7
Solyc04g080930.4 Solanum lycopersicum HOM05D005831 ORTHO05D007007 1.1e-110 404.1 306 66.3
Sp4g07000 Schrenkiella parvula HOM05D005831 ORTHO05D007007 1.5e-110 403.7 309 67.0
Phvul.001G039000 Phaseolus vulgaris HOM05D005831 ORTHO05D007007 4.3e-110 402.1 301 69.1
Aa31LG5G18500 Aethionema arabicum HOM05D005831 ORTHO05D007007 5.7e-110 401.7 311 65.3
AL4G18970 Arabidopsis lyrata HOM05D005831 ORTHO05D007007 9.7e-110 401.0 309 66.7
BcaB08g35248 Brassica carinata HOM05D005831 ORTHO05D007007 9.7e-110 401.0 309 66.7
TWI15G0825 Tripterygium wilfordii HOM05D005831 ORTHO05D007007 1.3e-109 400.6 305 68.9
AT2G26350 Arabidopsis thaliana HOM05D005831 ORTHO05D007007 3.7e-109 399.1 307 65.8
FAN15G1366 Fragaria x ananassa HOM05D005831 ORTHO05D007007 6.3e-109 398.3 330 69.1
Nitab4.5_0009773g0010 Nicotiana tabacum HOM05D005831 ORTHO05D007007 1.1e-108 397.5 336 63.1
BcaC07g40824 Brassica carinata HOM05D005831 ORTHO05D007007 1.8e-108 396.7 309 66.3
CAN.G6.15 Capsicum annuum HOM05D005831 ORTHO05D007007 1.8e-108 396.7 306 65.4
A09p54720 Brassica napus HOM05D005831 ORTHO05D007007 4.1e-108 395.6 309 66.0
Peaxi162Scf00101g01522 Petunia axillaris HOM05D005831 ORTHO05D007007 3.4e-107 392.5 306 66.3
Lalb_Chr09g0334801 Lupinus albus HOM05D005831 ORTHO05D007007 7.7e-107 391.3 301 66.8
A09p55230 Brassica napus HOM05D005831 ORTHO05D007007 1.7e-106 390.2 310 65.8
BraA09t40881Z Brassica rapa HOM05D005831 ORTHO05D007007 1.7e-106 390.2 310 65.8
SalBow4G2055 Salvia bowleyana HOM05D005831 ORTHO05D001900 2.2e-106 389.8 306 66.7
C08p38160 Brassica napus HOM05D005831 ORTHO05D007007 6.5e-106 388.3 310 65.8
BolC8t51391H Brassica oleracea HOM05D005831 ORTHO05D007007 6.5e-106 388.3 310 65.8
BraA09t40930Z Brassica rapa HOM05D005831 ORTHO05D007007 3.0e-103 379.4 294 67.3
AUR62020581 Chenopodium quinoa HOM05D005831 ORTHO05D007007 3.0e-103 379.4 301 65.8
EL10Ac2g03793 Beta vulgaris HOM05D005831 ORTHO05D007007 5.1e-103 378.6 301 65.4
unitig_748.g8240 Utricularia gibba HOM05D005831 ORTHO05D007007 4.4e-102 375.6 305 63.6
CDE06G1722 Ceratophyllum demersum HOM05D005831 ORTHO05D007007 9.1e-100 367.9 308 63.3
Sabra06G0171700 Salix brachista HOM05D005831 ORTHO05D007007 3.8e-98 362.5 368 59.2
Lj2A627G34 Lonicera japonica HOM05D005831 ORTHO05D007007 1.6e-96 357.1 308 63.6
Os07g0608800 Oryza sativa ssp. japonica HOM05D005831 ORTHO05D007007 6.1e-96 355.1 289 63.0
Sc09g0010090 Simmondsia chinensis HOM05D005831 ORTHO05D007007 1.4e-95 354.0 306 64.1
TWI38G0260 Tripterygium wilfordii HOM05D005831 ORTHO05D007007 2.6e-94 349.7 306 62.7
ATR0598G074 Amborella trichopoda HOM05D005831 ORTHO05D007007 5.7e-94 348.6 307 61.6
AUR62009089 Chenopodium quinoa HOM05D005831 ORTHO05D007007 1.7e-93 347.1 299 62.2
THA.LOC104806019 Tarenaya hassleriana HOM05D005831 ORTHO05D007007 5.3e-92 342.0 315 58.4
arahy.Tifrunner.gnm1.ann1.2ULK6I Arachis hypogaea HOM05D005831 ORTHO05D007007 5.0e-90 335.5 301 59.8
Ca_13107_v3 Cicer arietinum L. HOM05D005831 ORTHO05D007007 2.1e-88 330.1 307 58.3
Gohir.A07G020300 Gossypium hirsutum HOM05D005831 ORTHO05D007007 1.0e-87 327.8 252 67.9
Migut.A00085 Erythranthe guttata HOM05D005831 ORTHO05D007007 3.0e-87 326.2 275 63.6
Psat6g022600 Pisum sativum HOM05D005831 ORTHO05D007007 3.5e-83 312.8 247 64.0
Sed0000493 Sechium edule HOM05D005831 ORTHO05D007007 2.9e-82 309.7 246 65.0
TPR.G10653 Trifolium pratense HOM05D005831 ORTHO05D007007 8.5e-82 308.1 231 68.0
Aqoxy2G00096 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 2.8e-77 293.1 337 53.7
Hma1.2p1_0231F.1_g097410 Hydrangea macrophylla HOM05D005831 ORTHO05D007007 1.8e-76 290.4 232 66.8
FAN27G2028 Fragaria x ananassa HOM05D005831 ORTHO05D007007 5.4e-76 288.9 234 64.5
QL04p096516 Quercus lobata HOM05D000005 ORTHO05D000012 3.3e-73 279.6 227 65.2
FAN20G1335 Fragaria x ananassa HOM05D001583 ORTHO05D007007 3.0e-71 273.1 259 57.1
Zm00001eb108960 Zea mays HOM05D005831 ORTHO05D007007 2.2e-69 266.9 243 57.6
SGA_v2.0_scaffold64G21865 Striga asiatica HOM05D005831 ORTHO05D007007 3.7e-69 266.2 229 62.4
Aqoxy3G01853 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 4.9e-69 265.8 309 50.5
Mapoly0029s0064 Marchantia polymorpha HOM05D005831 ORTHO05D007007 1.9e-65 253.8 295 48.5
MELO3C016909.2 Cucumis melo HOM05D005831 ORTHO05D007007 5.8e-62 242.3 182 68.1
Pp3c13_19650 Physcomitrium patens HOM05D005831 ORTHO05D007007 1.3e-61 241.1 284 46.8
Atru.chr7.1858 Acer truncatum HOM05D005831 ORTHO05D007007 1.9e-60 237.3 182 67.6
HPP92_027843 Vanilla planifolia HOM05D005831 ORTHO05D007007 1.2e-59 234.6 194 62.9
arahy.Tifrunner.gnm1.ann1.VR587A Arachis hypogaea HOM05D005831 ORTHO05D007007 3.3e-57 226.5 347 42.7
Actinidia27570 Actinidia chinensis HOM05D005831 ORTHO05D007007 4.7e-56 222.6 230 54.8
arahy.Tifrunner.gnm1.ann1.12X2WP Arachis hypogaea HOM05D005831 ORTHO05D007007 5.2e-55 219.2 321 44.2
TPR.G38878 Trifolium pratense HOM05D005831 ORTHO05D007007 4.4e-54 216.1 213 53.1
SHI18844 Sapria himalayana HOM05D005831 ORTHO05D007007 3.5e-43 179.9 233 48.1
TPR.G40658 Trifolium pratense HOM05D005831 ORTHO05D007007 6.2e-40 169.1 143 60.8
CBR_g34477 Chara braunii HOM05D005831 ORTHO05D007007 4.5e-30 136.3 340 30.6
AagrBONN_evm.TU.Sc2ySwM_117.3066 Anthoceros agrestis HOM05D005831 ORTHO05D007007 3.9e-26 123.2 136 50.0
PRCOL_00001676 Prasinoderma coloniale HOM05D005831 ORTHO05D007007 3.9e-26 123.2 265 38.5
SEGI_09079 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.1e-24 117.5 141 44.7
Aqoxy5G02406 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 9.3e-20 102.1 214 35.0
Psat0s2173g0120 Pisum sativum HOM05D012210 ORTHO05D007007 9.3e-20 102.1 73 74.0
Cfa027250 Carpinus fangiana HOM05D005831 ORTHO05D007007 1.6e-19 101.3 330 27.3
CARHR118440 Cardamine hirsuta HOM05D005831 ORTHO05D007007 3.0e-18 97.1 80 60.0
MCO12G124 Micromonas commoda HOM05D005831 ORTHO05D007007 5.1e-18 96.3 325 28.3
RcHm_v2.0_Chr4g0387071 Rosa chinensis HOM05D005831 ORTHO05D007007 4.3e-17 93.2 105 46.7
HPP92_027844 Vanilla planifolia HOM05D005831 ORTHO05D007007 2.1e-16 90.9 78 65.4
Cre07.g337050 Chlamydomonas reinhardtii HOM05D005831 ORTHO05D007007 3.7e-16 90.1 345 26.4
SEGI_09068 Sequoiadendron giganteum HOM05D005831 ORTHO05D007007 3.1e-15 87.0 59 66.1
arahy.Tifrunner.gnm1.ann1.FV9EQX Arachis hypogaea HOM05D005831 ORTHO05D007007 5.5e-12 76.3 38 89.5
QL06p019149 Quercus lobata HOM05D005831 ORTHO05D007007 7.1e-12 75.9 83 54.2
Solyc08g061880.2 Solanum lycopersicum HOM05D005831 ORTHO05D007007 1.8e-10 71.2 52 71.2
Actinidia28224 Actinidia chinensis HOM05D000290 ORTHO05D007007 5.3e-07 59.7 31 80.6


User provided reference genes

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