Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0037500 Rhododendron simsii HOM05D003482 ORTHO05D004194 3.6e-114 414.8 198 100.0
Rhsim07G0170800 Rhododendron simsii HOM05D003482 ORTHO05D004194 6.5e-15 85.1 55 83.6
vmacro05100 Vaccinium macrocarpon HOM05D003482 ORTHO05D004194 8.5e-15 84.7 55 83.6
Duzib168G0916 Durio zibethinus HOM05D003482 ORTHO05D004194 4.7e-13 79.0 55 76.4
CSS0039275 Camellia sinensis var. sinensis HOM05D003482 ORTHO05D004194 1.0e-12 77.8 55 76.4
Dinv11875 Davidia involucrata HOM05D003482 ORTHO05D004194 1.0e-12 77.8 55 76.4
CsaV3_3G047320 Cucumis sativus L. HOM05D003482 ORTHO05D004194 1.4e-12 77.4 55 74.5
TWI32G0788 Tripterygium wilfordii HOM05D003482 ORTHO05D004194 1.8e-12 77.0 55 74.5
CANSAT25G1343 Cannabis sativa HOM05D003482 ORTHO05D004194 2.3e-12 76.6 55 72.7
Nn8g40986 Nelumbo nucifera HOM05D003482 ORTHO05D004194 2.3e-12 76.6 70 62.9
PGR044G0156 Punica granatum HOM05D003482 ORTHO05D004194 4.0e-12 75.9 55 72.7
GSVIVG01035556001 Vitis vinifera HOM05D003482 ORTHO05D004194 4.0e-12 75.9 55 72.7
DCAR_004550 Daucus carota HOM05D003482 ORTHO05D004194 5.2e-12 75.5 55 70.9
TAR506G0002 Trochodendron aralioides HOM05D003482 ORTHO05D004194 5.2e-12 75.5 55 72.7
COL.COLO4_18622 Corchorus olitorius HOM05D003482 ORTHO05D004194 6.8e-12 75.1 55 72.7
ClCG11G013930 Citrullus lanatus HOM05D003482 ORTHO05D004194 8.8e-12 74.7 55 70.9
MELO3C003597.2 Cucumis melo HOM05D003482 ORTHO05D004194 8.8e-12 74.7 55 70.9
Prupe.1G455100 Prunus persica HOM05D003482 ORTHO05D004194 8.8e-12 74.7 55 74.5
Cfa013321 Carpinus fangiana HOM05D003482 ORTHO05D004194 1.2e-11 74.3 62 67.7
Lj7C753G1 Lonicera japonica HOM05D003482 ORTHO05D004194 1.2e-11 74.3 55 72.7
Thecc.09G004000 Theobroma cacao HOM05D003482 ORTHO05D004194 1.2e-11 74.3 55 72.7
TAR626G0827 Trochodendron aralioides HOM05D003482 ORTHO05D004194 1.2e-11 74.3 55 72.7
Actinidia14155 Actinidia chinensis HOM05D003482 ORTHO05D004194 1.5e-11 73.9 55 74.5
CiPaw.07G208900 Carya illinoinensis HOM05D003482 ORTHO05D004194 1.5e-11 73.9 55 70.9
Lsat_1_v5_gn_5_60380 Lactuca sativa HOM05D003482 ORTHO05D004194 2.0e-11 73.6 55 70.9
ATR0626G323 Amborella trichopoda HOM05D003482 ORTHO05D004194 2.6e-11 73.2 55 70.9
PSO423G0073 Papaver somniferum HOM05D003482 ORTHO05D004194 2.6e-11 73.2 55 69.1
PSO596G0002 Papaver somniferum HOM05D003482 ORTHO05D004194 2.6e-11 73.2 55 69.1
MD08G1123100 Malus domestica HOM05D003482 ORTHO05D004194 3.4e-11 72.8 55 70.9
Oeu059294.1 Olea europaea HOM05D003482 ORTHO05D004194 3.4e-11 72.8 55 69.1
FAN15G0261 Fragaria x ananassa HOM05D003482 ORTHO05D004194 5.7e-11 72.0 55 69.1
FAN20G1504 Fragaria x ananassa HOM05D003482 ORTHO05D004194 5.7e-11 72.0 55 69.1
Aqoxy7G02727 Aquilegia oxysepala HOM05D003482 ORTHO05D004194 7.5e-11 71.6 55 65.5
Ciclev10007354m.g Citrus clementina HOM05D003482 ORTHO05D004194 7.5e-11 71.6 55 69.1
HanXRQChr13g0411821 Helianthus annuus HOM05D003482 ORTHO05D004194 7.5e-11 71.6 55 69.1
Hund19390 Selenicereus undatus HOM05D003482 ORTHO05D004194 7.5e-11 71.6 56 66.1
Ah.10g033820 Amaranthus hybridus HOM05D002718 ORTHO05D003269 9.8e-11 71.2 57 64.9
Cpa.g.sc328.6 Carica papaya HOM05D003482 ORTHO05D004194 9.8e-11 71.2 55 67.3
COL.COLO4_18624 Corchorus olitorius HOM05D003482 ORTHO05D004194 9.8e-11 71.2 55 67.3
BcaB07g29924 Brassica carinata HOM05D003482 ORTHO05D004194 1.3e-10 70.9 55 67.3
BraA02t08971Z Brassica rapa HOM05D003482 ORTHO05D004194 1.3e-10 70.9 55 67.3
FvH4_2g36370 Fragaria vesca HOM05D003482 ORTHO05D004194 1.3e-10 70.9 55 67.3
FAN27G0167 Fragaria x ananassa HOM05D003482 ORTHO05D004194 1.3e-10 70.9 55 67.3
Glyma.17G188300 Glycine max HOM05D003482 ORTHO05D004194 1.3e-10 70.9 55 65.5
Gohir.D05G068400 Gossypium hirsutum HOM05D003482 ORTHO05D004194 1.3e-10 70.9 55 69.1
Gorai.009G069300 Gossypium raimondii HOM05D003482 ORTHO05D004194 1.3e-10 70.9 55 69.1
HanXRQChr03g0082881 Helianthus annuus HOM05D003482 ORTHO05D004194 1.3e-10 70.9 55 67.3
Sabra18G0002200 Salix brachista HOM05D003482 ORTHO05D004194 1.3e-10 70.9 55 67.3
Sabra18G0009100 Salix brachista HOM05D003482 ORTHO05D004194 1.3e-10 70.9 55 67.3
Sp2g22640 Schrenkiella parvula HOM05D003482 ORTHO05D004194 1.3e-10 70.9 55 67.3
CAN.G195.3 Capsicum annuum HOM05D003482 ORTHO05D004194 1.7e-10 70.5 55 63.6
RcHm_v2.0_Chr6g0305511 Rosa chinensis HOM05D003482 ORTHO05D004194 1.7e-10 70.5 58 65.5
BcaC03g17943 Brassica carinata HOM05D003482 ORTHO05D004194 2.2e-10 70.1 55 65.5
A02p40080 Brassica napus HOM05D003482 ORTHO05D004194 2.2e-10 70.1 55 65.5
A06p35580 Brassica napus HOM05D003482 ORTHO05D004194 2.2e-10 70.1 55 65.5
C02p60040 Brassica napus HOM05D003482 ORTHO05D004194 2.2e-10 70.1 55 65.5
C07p42960 Brassica napus HOM05D003482 ORTHO05D004194 2.2e-10 70.1 55 65.5
BolC2t12059H Brassica oleracea HOM05D003482 ORTHO05D004194 2.2e-10 70.1 55 65.5
BolC7t44825H Brassica oleracea HOM05D003482 ORTHO05D004194 2.2e-10 70.1 55 65.5
BraA06t26483Z Brassica rapa HOM05D003482 ORTHO05D004194 2.2e-10 70.1 55 65.5
Eucgr.C03989 Eucalyptus grandis HOM05D003482 ORTHO05D004194 2.2e-10 70.1 55 67.3
Glyma.14G139800 Glycine max HOM05D003482 ORTHO05D004194 2.2e-10 70.1 55 63.6
Gohir.A05G066000 Gossypium hirsutum HOM05D003482 ORTHO05D004194 2.2e-10 70.1 55 69.1
Lalb_Chr14g0362391 Lupinus albus HOM05D003482 ORTHO05D004194 2.2e-10 70.1 55 63.6
Phvul.001G077100 Phaseolus vulgaris HOM05D003482 ORTHO05D004194 2.2e-10 70.1 55 63.6
QL12p026010 Quercus lobata HOM05D003482 ORTHO05D004194 2.2e-10 70.1 55 67.3
Solyc08g074280.4 Solanum lycopersicum HOM05D003482 ORTHO05D004194 2.2e-10 70.1 55 65.5
Sopen08g022930 Solanum pennellii HOM05D003482 ORTHO05D004194 2.2e-10 70.1 55 65.5
arahy.Tifrunner.gnm1.ann1.21Z9DD Arachis hypogaea HOM05D003482 ORTHO05D004194 2.8e-10 69.7 55 63.6
arahy.Tifrunner.gnm1.ann1.N6E37M Arachis hypogaea HOM05D003482 ORTHO05D004194 2.8e-10 69.7 55 63.6
ECA240G1915 Erigeron canadensis HOM05D003482 ORTHO05D004194 2.8e-10 69.7 55 67.3
Psat6g006000 Pisum sativum HOM05D003482 ORTHO05D004194 2.8e-10 69.7 61 57.4
THA.LOC104814963 Tarenaya hassleriana HOM05D003482 ORTHO05D004194 2.8e-10 69.7 55 67.3
Carub.0006s2266 Capsella rubella HOM05D003482 ORTHO05D004194 3.7e-10 69.3 55 65.5
Thhalv10003586m.g Eutrema salsugineum HOM05D003482 ORTHO05D004194 3.7e-10 69.3 55 65.5
Manes.03G001800 Manihot esculenta HOM05D003482 ORTHO05D004194 3.7e-10 69.3 52 69.2
Sc14g0002010 Simmondsia chinensis HOM05D003482 ORTHO05D004194 3.7e-10 69.3 56 64.3
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 3.7e-10 69.3 54 64.8
BcaNung01256 Brassica carinata HOM05D003482 ORTHO05D004194 4.9e-10 68.9 55 63.6
MBI13_g31548_MAGBIO Magnolia biondii HOM05D003482 ORTHO05D004194 4.9e-10 68.9 55 63.6
MSTRG.11822 Avicennia marina HOM05D003482 ORTHO05D004194 6.3e-10 68.6 55 63.6
CARHR188650 Cardamine hirsuta HOM05D003482 ORTHO05D004194 6.3e-10 68.6 55 63.6
MD15G1100800 Malus domestica HOM05D003482 ORTHO05D004194 6.3e-10 68.6 55 65.5
TPR.G18873 Trifolium pratense HOM05D003482 ORTHO05D004194 6.3e-10 68.6 55 58.2
CDE05G0655 Ceratophyllum demersum HOM05D003482 ORTHO05D004194 8.3e-10 68.2 55 61.8
Ca_12826_v3 Cicer arietinum L. HOM05D003482 ORTHO05D004194 8.3e-10 68.2 55 61.8
Hund03270 Selenicereus undatus HOM05D003482 ORTHO05D004194 8.3e-10 68.2 56 66.1
Manes.16G137200 Manihot esculenta HOM05D003482 ORTHO05D004194 1.1e-09 67.8 54 66.7
Nitab4.5_0000919g0060 Nicotiana tabacum HOM05D003482 ORTHO05D004194 1.1e-09 67.8 59 62.7
Medtr1g008980 Medicago truncatula HOM05D003482 ORTHO05D004194 1.4e-09 67.4 61 55.7
Potri.018G003400 Populus trichocarpa HOM05D003482 ORTHO05D004194 1.4e-09 67.4 55 61.8
Potri.018G003600 Populus trichocarpa HOM05D003482 ORTHO05D004194 1.4e-09 67.4 55 61.8
AL6G36450 Arabidopsis lyrata HOM05D003482 ORTHO05D004194 1.8e-09 67.0 55 61.8
AT5G24810 Arabidopsis thaliana HOM05D003482 ORTHO05D004194 1.8e-09 67.0 55 61.8
SGA_v2.0_scaffold27G11648 Striga asiatica HOM05D003482 ORTHO05D004194 1.8e-09 67.0 55 65.5
Zm00001eb272880 Zea mays HOM05D003482 ORTHO05D004194 1.8e-09 67.0 55 60.0
Atru.chr7.2677 Acer truncatum HOM05D003482 ORTHO05D004194 2.4e-09 66.6 55 65.5
EL10Ac2g03705 Beta vulgaris HOM05D003482 ORTHO05D004194 2.4e-09 66.6 56 58.9
Sabra06G0214300 Salix brachista HOM05D003482 ORTHO05D004194 2.4e-09 66.6 56 62.5
SalBow4G3081 Salvia bowleyana HOM05D003482 ORTHO05D004194 4.1e-09 65.9 55 65.5
Aa31LG11G4020 Aethionema arabicum HOM05D003482 ORTHO05D004194 5.4e-09 65.5 55 60.0
Lj1g0006594 Lotus japonicus HOM05D003482 ORTHO05D004194 5.4e-09 65.5 55 58.2
Migut.A00459 Erythranthe guttata HOM05D003482 ORTHO05D004194 9.2e-09 64.7 55 61.8
Os06g0701300 Oryza sativa ssp. japonica HOM05D003482 ORTHO05D004194 1.2e-08 64.3 55 58.2
Lsat_1_v5_gn_6_15541 Lactuca sativa HOM05D003482 ORTHO05D004194 1.6e-08 63.9 53 60.4
Lalb_Chr22g0361011 Lupinus albus HOM05D003482 ORTHO05D004194 1.6e-08 63.9 55 58.2
Potri.006G276600 Populus trichocarpa HOM05D003482 ORTHO05D004194 2.7e-08 63.2 56 60.7
SEGI_28596 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 2.7e-08 63.2 55 60.0
SEGI_04035 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 3.5e-08 62.8 55 60.0
HPP92_015798 Vanilla planifolia HOM05D003482 ORTHO05D004194 4.5e-08 62.4 55 60.0
vmacro17189 Vaccinium macrocarpon HOM05D002012 ORTHO05D001992 1.3e-07 60.8 80 45.0
HPP92_015810 Vanilla planifolia HOM05D003482 ORTHO05D004194 1.3e-07 60.8 55 58.2
SEGI_20762 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 1.7e-07 60.5 55 56.4
CSS0019146 Camellia sinensis var. sinensis HOM05D002012 ORTHO05D001992 2.9e-07 59.7 83 43.4
ECA233G2479 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.1e-06 57.8 70 44.3
HanXRQChr03g0081371 Helianthus annuus HOM05D003482 ORTHO05D004194 1.9e-06 57.0 53 50.9
CBR_g4189 Chara braunii HOM05D003482 ORTHO05D004194 2.5e-06 56.6 56 53.6
Mapoly0007s0194 Marchantia polymorpha HOM05D003482 ORTHO05D004194 3.3e-06 56.2 55 54.5
RhsimUnG0192400 Rhododendron simsii HOM05D002012 ORTHO05D001992 3.3e-06 56.2 80 42.5
Actinidia30209 Actinidia chinensis HOM05D002012 ORTHO05D001992 4.3e-06 55.8 83 39.8
Pp3c5_19100 Physcomitrium patens HOM05D003482 ORTHO05D004194 7.3e-06 55.1 50 52.0
Sp7g06790 Schrenkiella parvula HOM05D002012 ORTHO05D001992 7.3e-06 55.1 39 61.5
GSVIVG01015094001 Vitis vinifera HOM05D002012 ORTHO05D001992 9.5e-06 54.7 83 41.0


User provided reference genes

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