Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0035800 Rhododendron simsii HOM05D006815 ORTHO05D008536 5.8e-166 587.4 285 100.0
vmacro22625 Vaccinium macrocarpon HOM05D006815 ORTHO05D008536 1.4e-95 353.6 222 80.2
Actinidia22067 Actinidia chinensis HOM05D006815 ORTHO05D008536 8.1e-91 337.8 213 77.9
Dinv24040 Davidia involucrata HOM05D006815 ORTHO05D008536 2.4e-87 326.2 213 74.2
Haze_20020 Corylus avellana HOM05D006815 ORTHO05D008536 5.8e-81 305.1 207 69.6
Haze_20023 Corylus avellana HOM05D006815 ORTHO05D008536 5.8e-81 305.1 207 69.6
Cfa020143 Carpinus fangiana HOM05D006815 ORTHO05D008536 7.6e-81 304.7 207 70.0
Manes.08G042600 Manihot esculenta HOM05D006815 ORTHO05D008536 7.6e-81 304.7 202 71.3
CiPaw.09G028400 Carya illinoinensis HOM05D006815 ORTHO05D008536 2.2e-80 303.1 206 69.4
Cpa.g.sc9.26 Carica papaya HOM05D006815 ORTHO05D008536 4.9e-80 302.0 207 71.5
Prupe.7G081100 Prunus persica HOM05D006815 ORTHO05D008536 8.4e-80 301.2 211 68.2
Duzib106G1458 Durio zibethinus HOM05D006815 ORTHO05D008536 2.7e-78 296.2 215 67.0
TAR369G0232 Trochodendron aralioides HOM05D006815 ORTHO05D008536 7.8e-78 294.7 205 70.2
Gohir.D01G124800 Gossypium hirsutum HOM05D006815 ORTHO05D008536 1.0e-77 294.3 215 67.0
QL07p024496 Quercus lobata HOM05D006815 ORTHO05D008536 1.0e-77 294.3 201 70.1
Gohir.A01G137200 Gossypium hirsutum HOM05D006815 ORTHO05D008536 2.3e-77 293.1 215 67.4
MD14G1054000 Malus domestica HOM05D006815 ORTHO05D008536 3.9e-77 292.4 208 67.8
Gorai.002G155400 Gossypium raimondii HOM05D006815 ORTHO05D008536 5.1e-77 292.0 215 66.5
RcHm_v2.0_Chr3g0479231 Rosa chinensis HOM05D006815 ORTHO05D008536 6.6e-77 291.6 210 65.7
Sabra06G0149300 Salix brachista HOM05D006815 ORTHO05D008536 1.5e-76 290.4 201 68.2
Peaxi162Scf00463g00417 Petunia axillaris HOM05D006815 ORTHO05D008536 9.6e-76 287.7 210 66.2
MELO3C009608.2 Cucumis melo HOM05D006815 ORTHO05D008536 1.6e-75 287.0 210 65.7
Thecc.05G174900 Theobroma cacao HOM05D006815 ORTHO05D008536 1.6e-75 287.0 200 70.0
Atru.chr8.1155 Acer truncatum HOM05D006815 ORTHO05D008536 2.8e-75 286.2 205 68.3
Eucgr.A02470 Eucalyptus grandis HOM05D006815 ORTHO05D008536 3.6e-75 285.8 237 59.5
Oeu035701.1 Olea europaea HOM05D006815 ORTHO05D008536 4.7e-75 285.4 204 65.7
FvH4_6g21880 Fragaria vesca HOM05D006815 ORTHO05D008536 8.1e-75 284.6 210 64.3
FAN14G3951 Fragaria x ananassa HOM05D006815 ORTHO05D008536 8.1e-75 284.6 210 64.3
Sed0026757 Sechium edule HOM05D006815 ORTHO05D008536 8.1e-75 284.6 206 66.0
Cc06_g15510 Coffea canephora HOM05D006815 ORTHO05D008536 1.1e-74 284.3 206 65.0
TWI53G1298 Tripterygium wilfordii HOM05D006815 ORTHO05D008536 1.8e-74 283.5 205 65.4
ClCG10G017680 Citrullus lanatus HOM05D006815 ORTHO05D008536 2.4e-74 283.1 208 64.9
Potri.006G194600 Populus trichocarpa HOM05D006815 ORTHO05D008536 2.4e-74 283.1 201 67.2
CsaV3_3G038620 Cucumis sativus L. HOM05D006815 ORTHO05D008536 3.1e-74 282.7 206 65.5
Lsat_1_v5_gn_1_60941 Lactuca sativa HOM05D006815 ORTHO05D008536 4.0e-74 282.3 201 64.7
FAN02G2829 Fragaria x ananassa HOM05D006815 ORTHO05D008536 1.5e-73 280.4 210 63.3
GSVIVG01033467001 Vitis vinifera HOM05D006815 ORTHO05D008536 1.5e-73 280.4 187 72.7
HanXRQChr01g0024541 Helianthus annuus HOM05D006815 ORTHO05D008536 2.0e-73 280.0 199 64.3
FAN09G4209 Fragaria x ananassa HOM05D006815 ORTHO05D008536 3.4e-73 279.3 210 62.9
Solyc03g053020.4 Solanum lycopersicum HOM05D006815 ORTHO05D008536 4.4e-73 278.9 206 63.1
Ciclev10012299m.g Citrus clementina HOM05D006815 ORTHO05D008536 7.6e-73 278.1 240 58.3
PGSC0003DMG400001108 Solanum tuberosum HOM05D006815 ORTHO05D008536 7.6e-73 278.1 206 63.6
COL.COLO4_29358 Corchorus olitorius HOM05D006815 ORTHO05D008536 9.9e-73 277.7 200 67.5
PSO541G3114 Papaver somniferum HOM05D006815 ORTHO05D008536 9.9e-73 277.7 206 65.0
Sopen03g011500 Solanum pennellii HOM05D006815 ORTHO05D008536 1.3e-72 277.3 206 63.1
MSTRG.6498 Avicennia marina HOM05D006815 ORTHO05D008536 2.2e-72 276.6 204 63.7
AUR62012005 Chenopodium quinoa HOM05D006815 ORTHO05D008536 2.2e-72 276.6 200 66.5
AUR62015334 Chenopodium quinoa HOM05D006815 ORTHO05D008536 2.9e-72 276.2 200 67.0
Migut.J01868 Erythranthe guttata HOM05D006815 ORTHO05D008536 1.1e-71 274.2 214 61.2
CAN.G1314.3 Capsicum annuum HOM05D006815 ORTHO05D008536 1.4e-71 273.9 216 60.6
PSO675G7684 Papaver somniferum HOM05D006815 ORTHO05D008536 1.4e-71 273.9 204 64.7
CANSAT64G2825 Cannabis sativa HOM05D006815 ORTHO05D008536 4.2e-71 272.3 201 63.7
ECA248G0678 Erigeron canadensis HOM05D006815 ORTHO05D008536 9.3e-71 271.2 201 64.2
PGR004G0977 Punica granatum HOM05D006815 ORTHO05D008536 1.2e-70 270.8 225 60.0
CSS0043811 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 2.3e-69 266.5 206 68.0
CSS0019995 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 1.1e-68 264.2 206 67.0
SGA_v2.0_scaffold57G20097 Striga asiatica HOM05D006815 ORTHO05D008536 3.3e-68 262.7 196 62.2
Aqoxy2G00089 Aquilegia oxysepala HOM05D006815 ORTHO05D008536 5.6e-68 261.9 202 61.4
Lj2C363G3 Lonicera japonica HOM05D006815 ORTHO05D008536 1.3e-67 260.8 206 62.1
DCAR_013671 Daucus carota HOM05D006815 ORTHO05D008536 1.6e-67 260.4 204 63.7
Thhalv10017089m.g Eutrema salsugineum HOM05D006815 ORTHO05D008536 1.6e-67 260.4 201 63.7
Lalb_Chr15g0079111 Lupinus albus HOM05D006815 ORTHO05D008536 1.6e-67 260.4 208 60.1
EL10Ac3g06884 Beta vulgaris HOM05D006815 ORTHO05D008536 2.8e-67 259.6 208 60.6
Sp4g24220 Schrenkiella parvula HOM05D006815 ORTHO05D008536 2.8e-67 259.6 201 63.7
Nitab4.5_0000009g0210 Nicotiana tabacum HOM05D006815 ORTHO05D008536 4.8e-67 258.8 206 62.6
Nn2g15741 Nelumbo nucifera HOM05D006815 ORTHO05D008536 1.1e-66 257.7 208 60.6
Hund19213 Selenicereus undatus HOM05D006815 ORTHO05D008536 1.4e-66 257.3 203 60.1
SalBow6G3515 Salvia bowleyana HOM05D006815 ORTHO05D008536 3.1e-66 256.1 211 59.2
arahy.Tifrunner.gnm1.ann1.8HEC25 Arachis hypogaea HOM05D006815 ORTHO05D008536 4.0e-66 255.8 204 60.8
AL4G40310 Arabidopsis lyrata HOM05D006815 ORTHO05D008536 5.3e-66 255.4 211 60.2
AT2G41950 Arabidopsis thaliana HOM05D006815 ORTHO05D008536 1.2e-65 254.2 213 59.6
arahy.Tifrunner.gnm1.ann1.TZP9CN Arachis hypogaea HOM05D006815 ORTHO05D008536 1.2e-65 254.2 198 62.1
THA.LOC104824483 Tarenaya hassleriana HOM05D006815 ORTHO05D008536 1.5e-65 253.8 203 64.5
Nitab4.5_0002339g0010 Nicotiana tabacum HOM05D006815 ORTHO05D008536 4.5e-65 252.3 206 61.7
arahy.Tifrunner.gnm1.ann1.G1RGZB Arachis hypogaea HOM05D006815 ORTHO05D008536 7.6e-65 251.5 204 60.3
Aa31LG1G24180 Aethionema arabicum HOM05D006815 ORTHO05D008536 2.9e-64 249.6 209 59.3
BcaC02g12449 Brassica carinata HOM05D006815 ORTHO05D008536 3.2e-63 246.1 191 61.8
C04p03160 Brassica napus HOM05D006815 ORTHO05D008536 3.2e-63 246.1 191 61.8
BolC4t21956H Brassica oleracea HOM05D006815 ORTHO05D008536 3.2e-63 246.1 191 61.8
A05p02650 Brassica napus HOM05D006815 ORTHO05D008536 5.4e-63 245.4 191 61.3
BraA05t19258Z Brassica rapa HOM05D006815 ORTHO05D008536 5.4e-63 245.4 191 61.3
Carub.0004s2428 Capsella rubella HOM05D006815 ORTHO05D008536 4.6e-62 242.3 214 54.2
Lj1g0024455 Lotus japonicus HOM05D006815 ORTHO05D008536 6.0e-62 241.9 235 55.3
Phvul.001G144400 Phaseolus vulgaris HOM05D006815 ORTHO05D008536 2.3e-61 240.0 209 61.2
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 2.5e-60 236.5 204 53.9
VMungo1383G0507 Vigna mungo HOM05D006815 ORTHO05D008536 5.6e-60 235.3 204 59.3
ATR0598G218 Amborella trichopoda HOM05D006815 ORTHO05D008536 1.2e-57 227.6 217 52.1
Glyma.19G149900 Glycine max HOM05D006815 ORTHO05D008536 1.2e-57 227.6 204 56.9
Glyma.03G146600 Glycine max HOM05D006815 ORTHO05D008536 3.4e-57 226.1 204 56.9
Psat3g067520 Pisum sativum HOM05D006815 ORTHO05D008536 5.8e-57 225.3 203 55.2
TPR.G13363 Trifolium pratense HOM05D006815 ORTHO05D008536 5.8e-57 225.3 203 54.2
MBI19_g17427_MAGBIO Magnolia biondii HOM05D006815 ORTHO05D008536 6.4e-56 221.9 210 53.8
Medtr7g093640 Medicago truncatula HOM05D006815 ORTHO05D008536 6.4e-56 221.9 189 56.6
arahy.Tifrunner.gnm1.ann1.70NGGP Arachis hypogaea HOM05D006815 ORTHO05D008536 8.4e-56 221.5 200 57.0
Ca_08540_v3 Cicer arietinum L. HOM05D006815 ORTHO05D008536 2.7e-54 216.5 189 56.1
HPP92_023458 Vanilla planifolia HOM05D006815 ORTHO05D008536 2.0e-49 200.3 213 47.9
CDE05G2500 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 2.6e-49 199.9 192 53.6
HPP92_023474 Vanilla planifolia HOM05D006815 ORTHO05D008536 7.6e-49 198.4 213 47.4
arahy.Tifrunner.gnm1.ann1.13XKQP Arachis hypogaea HOM05D006815 ORTHO05D008536 3.8e-48 196.1 198 52.5
MD12G1054600 Malus domestica HOM05D006815 ORTHO05D008536 4.2e-47 192.6 152 60.5
Sc13g0002390 Simmondsia chinensis HOM05D006815 ORTHO05D008536 1.2e-46 191.0 138 65.9
CAN.G274.29 Capsicum annuum HOM05D006815 ORTHO05D008536 2.6e-41 173.3 154 57.1
CARHR137070 Cardamine hirsuta HOM05D006815 ORTHO05D008536 2.5e-39 166.8 142 59.9
CDE11G0339 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 2.7e-30 136.7 130 53.8
SEGI_30907 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 4.7e-30 136.0 195 37.4
Os03g0226700 Oryza sativa ssp. japonica HOM05D006815 ORTHO05D008536 1.8e-29 134.0 200 38.5
BcaC03g14280 Brassica carinata HOM05D006815 ORTHO05D008536 9.4e-23 111.7 191 37.2
arahy.Tifrunner.gnm1.ann1.19RU7Q Arachis hypogaea HOM05D006815 ORTHO05D008536 1.4e-18 97.8 75 60.0
CARHR137080 Cardamine hirsuta HOM05D006815 ORTHO05D008536 1.4e-18 97.8 63 69.8
Pp3c12_7730 Physcomitrium patens HOM05D006815 ORTHO05D008536 3.1e-18 96.7 182 32.4
Nn6g34990 Nelumbo nucifera HOM05D006815 ORTHO05D008536 2.5e-15 87.0 64 60.9
Zm00001eb009870 Zea mays HOM05D006815 ORTHO05D008536 5.2e-13 79.3 148 33.8
SEGI_06955 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 6.8e-13 79.0 132 34.8
C02p16600 Brassica napus HOM05D006815 ORTHO05D008536 5.3e-10 69.3 71 52.1
BolC2t07761H Brassica oleracea HOM05D006815 ORTHO05D008536 2.0e-09 67.4 71 50.7
Nn3g21845 Nelumbo nucifera HOM05D006815 ORTHO05D008536 1.6e-06 57.8 42 59.5


User provided reference genes

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