Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0027800 Rhododendron simsii HOM05D002500 ORTHO05D002587 7.2e-44 180.3 95 100.0
Rhsim03G0027600 Rhododendron simsii HOM05D002500 ORTHO05D002587 1.3e-13 79.7 60 76.7
Oeu008165.1 Olea europaea HOM05D002500 ORTHO05D002587 5.0e-13 77.8 59 76.3
vmacro07832 Vaccinium macrocarpon HOM05D002500 ORTHO05D002587 1.1e-12 76.6 59 74.6
vmacro23151 Vaccinium macrocarpon HOM05D002500 ORTHO05D002587 1.1e-12 76.6 59 74.6
SGA_v2.0_scaffold94G28489 Striga asiatica HOM05D002500 ORTHO05D002587 1.5e-12 76.3 59 74.6
CSS0018222 Camellia sinensis var. sinensis HOM05D002500 ORTHO05D002587 1.2e-11 73.2 59 69.5
CSS0038636 Camellia sinensis var. sinensis HOM05D002500 ORTHO05D002587 1.2e-11 73.2 59 69.5
Hma1.2p1_0788F.1_g218090 Hydrangea macrophylla HOM05D002500 ORTHO05D002587 1.2e-11 73.2 59 69.5
Lju124C44G2 Lonicera japonica HOM05D002500 ORTHO05D002587 1.2e-11 73.2 59 71.2
Nn8g40639 Nelumbo nucifera HOM05D002500 ORTHO05D002587 1.6e-11 72.8 101 46.5
Dinv39622 Davidia involucrata HOM05D002500 ORTHO05D002587 2.1e-11 72.4 59 71.2
Hund24695 Selenicereus undatus HOM05D002500 ORTHO05D002587 2.1e-11 72.4 59 69.5
Cc06_g17680 Coffea canephora HOM05D002500 ORTHO05D002587 2.8e-11 72.0 59 69.5
Migut.K00093 Erythranthe guttata HOM05D002500 ORTHO05D002587 2.8e-11 72.0 59 71.2
Potri.006G048900 Populus trichocarpa HOM05D002500 ORTHO05D002587 2.8e-11 72.0 59 71.2
Os11g0447300 Oryza sativa ssp. japonica HOM05D002500 ORTHO05D002587 4.7e-11 71.2 59 67.8
Sabra06G0034200 Salix brachista HOM05D002500 ORTHO05D002587 4.7e-11 71.2 59 71.2
GSVIVG01033255001 Vitis vinifera HOM05D002500 ORTHO05D002587 4.7e-11 71.2 59 69.5
HPP92_009905 Vanilla planifolia HOM05D002500 ORTHO05D002587 6.1e-11 70.9 60 70.0
DCAR_020498 Daucus carota HOM05D002500 ORTHO05D002587 8.0e-11 70.5 59 66.1
Lalb_Chr25g0287211 Lupinus albus HOM05D002500 ORTHO05D002587 8.0e-11 70.5 59 67.8
CAN.G128.4 Capsicum annuum HOM05D002500 ORTHO05D002587 1.0e-10 70.1 62 66.1
Sed0010393 Sechium edule HOM05D002500 ORTHO05D002587 1.0e-10 70.1 59 67.8
Zm00001eb047920 Zea mays HOM05D002500 ORTHO05D002587 1.0e-10 70.1 59 66.1
Actinidia09314 Actinidia chinensis HOM05D002500 ORTHO05D002587 1.4e-10 69.7 59 69.5
MD12G1076600 Malus domestica HOM05D002500 ORTHO05D002587 1.4e-10 69.7 60 65.0
SalBow6G4165 Salvia bowleyana HOM05D002500 ORTHO05D002587 1.4e-10 69.7 82 54.9
arahy.Tifrunner.gnm1.ann1.G31LB0 Arachis hypogaea HOM05D002500 ORTHO05D002587 1.8e-10 69.3 59 67.8
arahy.Tifrunner.gnm1.ann1.P5C9KT Arachis hypogaea HOM05D002500 ORTHO05D002587 2.3e-10 68.9 59 67.8
CARHR136750 Cardamine hirsuta HOM05D002500 ORTHO05D002587 2.3e-10 68.9 59 66.1
CsaV3_4G011840 Cucumis sativus L. HOM05D001499 ORTHO05D001560 2.3e-10 68.9 59 69.5
Cpa.g.c32367 Carica papaya HOM05D002500 ORTHO05D002587 3.0e-10 68.6 59 66.1
ECA247G3065 Erigeron canadensis HOM05D002500 ORTHO05D002587 3.0e-10 68.6 59 67.8
Eucgr.K01783 Eucalyptus grandis HOM05D002500 ORTHO05D002587 3.0e-10 68.6 54 72.2
Nitab4.5_0000364g0070 Nicotiana tabacum HOM05D002500 ORTHO05D002587 3.0e-10 68.6 59 67.8
Nitab4.5_0003307g0060 Nicotiana tabacum HOM05D002500 ORTHO05D002587 3.0e-10 68.6 59 67.8
Sc19g0006570 Simmondsia chinensis HOM05D002500 ORTHO05D002587 3.0e-10 68.6 59 64.4
Solyc10g080070.3 Solanum lycopersicum HOM05D002500 ORTHO05D002587 3.0e-10 68.6 59 67.8
Sopen10g030680 Solanum pennellii HOM05D002500 ORTHO05D002587 3.0e-10 68.6 59 67.8
PGSC0003DMG400023726 Solanum tuberosum HOM05D002500 ORTHO05D002587 3.0e-10 68.6 59 67.8
THA.LOC104804852 Tarenaya hassleriana HOM05D002500 ORTHO05D002587 3.0e-10 68.6 59 66.1
BcaC02g12789 Brassica carinata HOM05D002500 ORTHO05D002587 4.0e-10 68.2 59 64.4
A05p02400 Brassica napus HOM05D002500 ORTHO05D002587 4.0e-10 68.2 59 64.4
BolC4t21925H Brassica oleracea HOM05D002500 ORTHO05D002587 4.0e-10 68.2 59 64.4
BraA05t19234Z Brassica rapa HOM05D002500 ORTHO05D002587 4.0e-10 68.2 59 64.4
AUR62026057 Chenopodium quinoa HOM05D002500 ORTHO05D002587 4.0e-10 68.2 59 62.7
Eucgr.K01998 Eucalyptus grandis HOM05D002500 ORTHO05D002587 4.0e-10 68.2 69 59.4
HanXRQChr10g0300661 Helianthus annuus HOM05D002500 ORTHO05D002587 4.0e-10 68.2 59 67.8
TAR369G1084 Trochodendron aralioides HOM05D002500 ORTHO05D002587 4.0e-10 68.2 59 67.8
AUR62024466 Chenopodium quinoa HOM05D002500 ORTHO05D002587 5.2e-10 67.8 59 62.7
ClCG04G003450 Citrullus lanatus HOM05D002500 ORTHO05D002587 5.2e-10 67.8 59 67.8
HanXRQChr01g0028391 Helianthus annuus HOM05D002500 ORTHO05D002587 6.8e-10 67.4 59 67.8
Lsat_1_v5_gn_9_30741 Lactuca sativa HOM05D002500 ORTHO05D002587 6.8e-10 67.4 59 67.8
Peaxi162Scf00130g00422 Petunia axillaris HOM05D002500 ORTHO05D002587 6.8e-10 67.4 59 69.5
unitig_61.g26277 Utricularia gibba HOM05D002500 ORTHO05D002587 6.8e-10 67.4 59 66.1
Eucgr.L01356 Eucalyptus grandis HOM05D002500 ORTHO05D002587 8.8e-10 67.0 76 56.6
SalBow6G2571 Salvia bowleyana HOM05D002500 ORTHO05D002587 8.8e-10 67.0 59 64.4
SalBow7G1667 Salvia bowleyana HOM05D002500 ORTHO05D002587 8.8e-10 67.0 59 64.4
Ah.04g151560 Amaranthus hybridus HOM05D002500 ORTHO05D002587 1.2e-09 66.6 59 64.4
C04p02850 Brassica napus HOM05D002500 ORTHO05D002587 1.2e-09 66.6 59 62.7
CiPaw.10G027900 Carya illinoinensis HOM05D002500 ORTHO05D002587 1.2e-09 66.6 59 62.7
Eucgr.K01722 Eucalyptus grandis HOM05D002500 ORTHO05D002587 1.2e-09 66.6 59 66.1
Eucgr.K01761 Eucalyptus grandis HOM05D002500 ORTHO05D002587 1.2e-09 66.6 59 66.1
Eucgr.K01766 Eucalyptus grandis HOM05D002500 ORTHO05D002587 1.2e-09 66.6 59 66.1
Eucgr.K02006 Eucalyptus grandis HOM05D002500 ORTHO05D002587 1.2e-09 66.6 59 66.1
MD14G1074700 Malus domestica HOM05D002500 ORTHO05D002587 1.2e-09 66.6 60 65.0
Manes.09G019500 Manihot esculenta HOM05D002500 ORTHO05D002587 1.2e-09 66.6 59 66.1
Glyma.03G135000 Glycine max HOM05D002500 ORTHO05D002587 1.5e-09 66.2 59 66.1
Phvul.001G130500 Phaseolus vulgaris HOM05D002500 ORTHO05D002587 1.5e-09 66.2 59 66.1
Aa31LG1G23690 Aethionema arabicum HOM05D002500 ORTHO05D002587 2.0e-09 65.9 59 64.4
EL10Ac3g07104 Beta vulgaris HOM05D002500 ORTHO05D002587 2.0e-09 65.9 59 62.7
Ca_08442_v3 Cicer arietinum L. HOM05D002500 ORTHO05D002587 2.0e-09 65.9 59 66.1
Peaxi162Scf00109g00129 Petunia axillaris HOM05D002500 ORTHO05D002587 2.0e-09 65.9 59 66.1
CDE09G0898 Ceratophyllum demersum HOM05D002500 ORTHO05D002587 2.6e-09 65.5 60 61.7
Thhalv10016807m.g Eutrema salsugineum HOM05D002500 ORTHO05D002587 2.6e-09 65.5 59 62.7
SalBow6G5828 Salvia bowleyana HOM05D002500 ORTHO05D002587 2.6e-09 65.5 59 62.7
TWI77G0179 Tripterygium wilfordii HOM05D002500 ORTHO05D002587 2.6e-09 65.5 59 64.4
Gohir.D01G177100 Gossypium hirsutum HOM05D002500 ORTHO05D002587 3.4e-09 65.1 59 62.7
MD12G1076200 Malus domestica HOM05D002500 ORTHO05D002587 3.4e-09 65.1 60 63.3
PGR142G2008 Punica granatum HOM05D002500 ORTHO05D002587 3.4e-09 65.1 59 66.1
RcHm_v2.0_Chr3g0482961 Rosa chinensis HOM05D002500 ORTHO05D002587 3.4e-09 65.1 59 62.7
Solyc04g016050.3 Solanum lycopersicum HOM05D002500 ORTHO05D002587 3.4e-09 65.1 57 68.4
vmacro13340 Vaccinium macrocarpon HOM05D003425 ORTHO05D003897 3.4e-09 65.1 43 81.4
Actinidia39213 Actinidia chinensis HOM05D002500 ORTHO05D002587 4.4e-09 64.7 63 60.3
AL4G39820 Arabidopsis lyrata HOM05D002500 ORTHO05D002587 4.4e-09 64.7 59 61.0
AL4G39970 Arabidopsis lyrata HOM05D002500 ORTHO05D002587 4.4e-09 64.7 59 61.0
AT2G41670 Arabidopsis thaliana HOM05D002500 ORTHO05D002587 4.4e-09 64.7 59 61.0
Carub.0004s2394 Capsella rubella HOM05D002500 ORTHO05D002587 4.4e-09 64.7 59 61.0
Glyma.19G137600 Glycine max HOM05D002500 ORTHO05D002587 4.4e-09 64.7 59 64.4
Sopen04g008120 Solanum pennellii HOM05D002500 ORTHO05D002587 4.4e-09 64.7 59 66.1
FvH4_6g24210 Fragaria vesca HOM05D002500 ORTHO05D002587 7.5e-09 63.9 59 62.7
FAN14G3838 Fragaria x ananassa HOM05D002500 ORTHO05D002587 7.5e-09 63.9 59 62.7
Lj1g0024295 Lotus japonicus HOM05D002500 ORTHO05D002587 7.5e-09 63.9 59 66.1
QL07p001548 Quercus lobata HOM05D002500 ORTHO05D002587 7.5e-09 63.9 59 62.7
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 9.8e-09 63.5 59 61.0
FAN05G1296 Fragaria x ananassa HOM05D002500 ORTHO05D002587 9.8e-09 63.5 59 62.7
Medtr7g091320 Medicago truncatula HOM05D002500 ORTHO05D002587 1.3e-08 63.2 59 62.7
Psat3g073200 Pisum sativum HOM05D002500 ORTHO05D002587 1.3e-08 63.2 59 64.4
Gohir.A01G192700 Gossypium hirsutum HOM05D002500 ORTHO05D002587 1.7e-08 62.8 59 61.0
Gorai.002G226100 Gossypium raimondii HOM05D002500 ORTHO05D002587 1.7e-08 62.8 59 61.0
Sp4g23910 Schrenkiella parvula HOM05D002500 ORTHO05D002587 1.7e-08 62.8 59 61.0
MELO3C023106.2 Cucumis melo HOM05D002500 ORTHO05D002587 2.2e-08 62.4 59 64.4
PSO261G0002 Papaver somniferum HOM05D002500 ORTHO05D002587 2.2e-08 62.4 59 62.7
PSO384G0869 Papaver somniferum HOM05D002500 ORTHO05D002587 2.2e-08 62.4 59 62.7
PSO384G1466 Papaver somniferum HOM05D002500 ORTHO05D002587 2.2e-08 62.4 59 62.7
Eucgr.K01980 Eucalyptus grandis HOM05D002500 ORTHO05D002587 2.8e-08 62.0 57 63.2
Ciclev10005755m.g Citrus clementina HOM05D002500 ORTHO05D002587 4.9e-08 61.2 59 62.7
COL.COLO4_04893 Corchorus olitorius HOM05D002500 ORTHO05D002587 6.3e-08 60.8 59 57.6
VMungo1383G0256 Vigna mungo HOM05D002500 ORTHO05D002587 6.3e-08 60.8 59 61.0
Aqoxy5G03596 Aquilegia oxysepala HOM05D002500 ORTHO05D002587 1.1e-07 60.1 59 59.3
ATR0782G096 Amborella trichopoda HOM05D002500 ORTHO05D002587 1.4e-07 59.7 59 61.0
Thecc.05G149900 Theobroma cacao HOM05D002500 ORTHO05D002587 1.4e-07 59.7 62 54.8
Atru.chr1.1133 Acer truncatum HOM05D002500 ORTHO05D002587 3.1e-07 58.5 59 57.6
SHI12397 Sapria himalayana HOM05D002500 ORTHO05D002587 4.1e-07 58.2 60 56.7
Duzib106G0575 Durio zibethinus HOM05D002500 ORTHO05D002587 7.0e-07 57.4 67 49.3
TPR.G18252 Trifolium pratense HOM05D002500 ORTHO05D002587 9.2e-07 57.0 67 55.2
CSS0020037 Camellia sinensis var. sinensis HOM05D003425 ORTHO05D003897 7.8e-06 53.9 45 64.4
Nitab4.5_0002328g0030 Nicotiana tabacum HOM05D002500 ORTHO05D002587 7.8e-06 53.9 48 66.7


User provided reference genes

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