Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0026700 Rhododendron simsii HOM05D001718 ORTHO05D007949 4.6e-94 347.8 170 100.0
Rhsim03G0031900 Rhododendron simsii HOM05D001718 ORTHO05D007949 4.9e-35 151.8 87 83.9
Rhsim03G0025400 Rhododendron simsii HOM05D036651 ORTHO05D007949 4.6e-25 118.6 153 47.7
SGA_v2.0_scaffold105G30454 Striga asiatica HOM05D001718 ORTHO05D007949 9.6e-15 84.3 132 40.2
vmacro07869 Vaccinium macrocarpon HOM05D001718 ORTHO05D007949 2.1e-14 83.2 167 37.7
Actinidia09361 Actinidia chinensis HOM05D001718 ORTHO05D007949 5.3e-13 78.6 150 38.7
CARHR167880 Cardamine hirsuta HOM05D001718 ORTHO05D007949 6.9e-13 78.2 148 37.8
CSS0042564 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D007949 9.0e-13 77.8 149 36.9
Rhsim03G0012100 Rhododendron simsii HOM05D001718 ORTHO05D007949 1.2e-12 77.4 196 33.7
BcaC07g40148 Brassica carinata HOM05D001718 ORTHO05D007949 1.5e-12 77.0 148 37.8
BolC8t50928H Brassica oleracea HOM05D001718 ORTHO05D007949 1.5e-12 77.0 148 37.2
C08p33260 Brassica napus HOM05D001718 ORTHO05D007949 2.6e-12 76.3 144 38.2
BcaC07g40353 Brassica carinata HOM05D001718 ORTHO05D007949 3.4e-12 75.9 144 38.2
A09p50530 Brassica napus HOM05D001718 ORTHO05D007949 3.4e-12 75.9 144 38.2
Sabra06G0039300 Salix brachista HOM05D001718 ORTHO05D007949 4.5e-12 75.5 163 34.4
CAN.G115.8 Capsicum annuum HOM05D001718 ORTHO05D007949 5.8e-12 75.1 147 37.4
Dinv24121 Davidia involucrata HOM05D001718 ORTHO05D007949 5.8e-12 75.1 148 37.2
Potri.006G055400 Populus trichocarpa HOM05D001718 ORTHO05D007949 5.8e-12 75.1 163 35.6
VMungo0720G1950 Vigna mungo HOM05D001718 ORTHO05D007949 5.8e-12 75.1 145 35.9
HanXRQChr05g0132201 Helianthus annuus HOM05D001718 ORTHO05D007949 7.6e-12 74.7 149 36.2
Medtr1g052135 Medicago truncatula HOM05D001718 ORTHO05D007949 7.6e-12 74.7 145 35.9
COL.COLO4_28683 Corchorus olitorius HOM05D001718 ORTHO05D007949 9.9e-12 74.3 144 36.1
Migut.J01789 Erythranthe guttata HOM05D001718 ORTHO05D007949 9.9e-12 74.3 166 34.3
Psat6g123600 Pisum sativum HOM05D001718 ORTHO05D007949 9.9e-12 74.3 145 35.2
THA.LOC104819007 Tarenaya hassleriana HOM05D001718 ORTHO05D007949 9.9e-12 74.3 148 37.2
TPR.G22782 Trifolium pratense HOM05D001718 ORTHO05D007949 9.9e-12 74.3 145 35.9
Ca_10140_v3 Cicer arietinum L. HOM05D001718 ORTHO05D007949 1.3e-11 73.9 145 35.9
PGR004G2457 Punica granatum HOM05D001718 ORTHO05D007949 2.2e-11 73.2 148 36.5
Solyc03g059260.4 Solanum lycopersicum HOM05D001718 ORTHO05D007949 2.2e-11 73.2 147 36.1
Sopen03g013610 Solanum pennellii HOM05D001718 ORTHO05D007949 2.2e-11 73.2 147 36.1
EL10Ac3g07007 Beta vulgaris HOM05D001718 ORTHO05D007949 2.9e-11 72.8 162 34.6
Migut.K01152 Erythranthe guttata HOM05D001718 ORTHO05D007949 2.9e-11 72.8 159 34.6
Migut.L00558 Erythranthe guttata HOM05D001718 ORTHO05D007949 3.8e-11 72.4 166 33.1
Glyma.10G094900 Glycine max HOM05D001718 ORTHO05D007949 3.8e-11 72.4 145 35.9
QL07p021843 Quercus lobata HOM05D001718 ORTHO05D007949 3.8e-11 72.4 148 35.8
Cc06_g16540 Coffea canephora HOM05D001718 ORTHO05D007949 4.9e-11 72.0 147 33.3
Gorai.002G229800 Gossypium raimondii HOM05D001718 ORTHO05D007949 4.9e-11 72.0 148 36.5
Nn2g15432 Nelumbo nucifera HOM05D001718 ORTHO05D007949 4.9e-11 72.0 148 34.5
BraA09t40507Z Brassica rapa HOM05D001718 ORTHO05D007949 6.4e-11 71.6 151 35.8
AUR62025984 Chenopodium quinoa HOM05D001718 ORTHO05D007949 6.4e-11 71.6 167 32.9
Gohir.A01G196000 Gossypium hirsutum HOM05D001718 ORTHO05D007949 6.4e-11 71.6 148 35.8
Gohir.D01G186400 Gossypium hirsutum HOM05D001718 ORTHO05D007949 6.4e-11 71.6 148 35.8
Nitab4.5_0000452g0010 Nicotiana tabacum HOM05D001718 ORTHO05D007949 6.4e-11 71.6 147 36.1
Nitab4.5_0002861g0040 Nicotiana tabacum HOM05D001718 ORTHO05D007949 6.4e-11 71.6 147 36.1
Peaxi162Scf00189g00041 Petunia axillaris HOM05D001718 ORTHO05D007949 6.4e-11 71.6 147 36.1
Atru.chr1.1027 Acer truncatum HOM05D001718 ORTHO05D007949 8.4e-11 71.2 148 35.8
Lsat_1_v5_gn_3_85020 Lactuca sativa HOM05D001718 ORTHO05D007949 8.4e-11 71.2 164 31.7
Lsat_1_v5_gn_8_80041 Lactuca sativa HOM05D001718 ORTHO05D007949 8.4e-11 71.2 164 32.9
Phvul.007G255600 Phaseolus vulgaris HOM05D001718 ORTHO05D007949 8.4e-11 71.2 145 35.2
Ciclev10004757m.g Citrus clementina HOM05D001718 ORTHO05D007949 1.4e-10 70.5 167 34.7
FAN14G2301 Fragaria x ananassa HOM05D001718 ORTHO05D007949 1.4e-10 70.5 148 35.1
Lj5g0011485 Lotus japonicus HOM05D001718 ORTHO05D007949 1.4e-10 70.5 145 35.2
Cfa016868 Carpinus fangiana HOM05D001718 ORTHO05D007949 1.9e-10 70.1 163 32.5
AUR62024389 Chenopodium quinoa HOM05D001718 ORTHO05D007949 1.9e-10 70.1 167 33.5
ClCG04G000670 Citrullus lanatus HOM05D001718 ORTHO05D007949 1.9e-10 70.1 148 35.8
CsaV3_4G031400 Cucumis sativus L. HOM05D001718 ORTHO05D007949 1.9e-10 70.1 148 35.1
DCAR_013578 Daucus carota HOM05D001718 ORTHO05D007949 1.9e-10 70.1 149 34.9
FAN02G1268 Fragaria x ananassa HOM05D001718 ORTHO05D007949 1.9e-10 70.1 148 35.1
PGSC0003DMG400033928 Solanum tuberosum HOM05D001718 ORTHO05D007949 1.9e-10 70.1 147 34.7
Aqoxy1G00219 Aquilegia oxysepala HOM05D001718 ORTHO05D007949 2.4e-10 69.7 148 33.8
MELO3C009027.2 Cucumis melo HOM05D001718 ORTHO05D007949 2.4e-10 69.7 148 35.1
FvH4_6g23140 Fragaria vesca HOM05D001718 ORTHO05D007949 2.4e-10 69.7 148 35.1
Rhsim09G0173000 Rhododendron simsii HOM05D001718 ORTHO05D007949 2.4e-10 69.7 40 87.5
RcHm_v2.0_Chr3g0480991 Rosa chinensis HOM05D001718 ORTHO05D007949 2.4e-10 69.7 148 35.1
Thecc.05G163200 Theobroma cacao HOM05D001718 ORTHO05D007949 2.4e-10 69.7 148 33.8
AT3G57680 Arabidopsis thaliana HOM05D001718 ORTHO05D007949 4.2e-10 68.9 148 34.5
Thhalv10005897m.g Eutrema salsugineum HOM05D001718 ORTHO05D007949 4.2e-10 68.9 148 35.1
Sp5g04950 Schrenkiella parvula HOM05D001718 ORTHO05D007949 4.2e-10 68.9 148 34.5
Sed0001386 Sechium edule HOM05D001718 ORTHO05D007949 4.2e-10 68.9 148 35.1
MD12G1066100 Malus domestica HOM05D001718 ORTHO05D007949 5.4e-10 68.6 148 35.1
TAR633G2084 Trochodendron aralioides HOM05D001718 ORTHO05D007949 7.1e-10 68.2 148 34.5
MSTRG.6454 Avicennia marina HOM05D001718 ORTHO05D007949 9.3e-10 67.8 162 31.5
Cpa.g.sc85.132 Carica papaya HOM05D001718 ORTHO05D007949 1.2e-09 67.4 143 35.0
arahy.Tifrunner.gnm1.ann1.Q9AIC8 Arachis hypogaea HOM05D001718 ORTHO05D007949 1.6e-09 67.0 143 35.7
Duzib106G1478 Durio zibethinus HOM05D001718 ORTHO05D007949 1.6e-09 67.0 157 33.1
Sc13g0001990 Simmondsia chinensis HOM05D001718 ORTHO05D007949 1.6e-09 67.0 167 34.1
Prupe.7G068000 Prunus persica HOM05D001718 ORTHO05D007949 2.1e-09 66.6 148 34.5
Haze_19914 Corylus avellana HOM05D001718 ORTHO05D007949 2.7e-09 66.2 148 33.8
MD14G1066000 Malus domestica HOM05D001718 ORTHO05D007949 2.7e-09 66.2 149 34.2
Rhsim03G0007500 Rhododendron simsii HOM05D033359 ORTHO05D340347 2.7e-09 66.2 45 75.6
Hund24747 Selenicereus undatus HOM05D001718 ORTHO05D007949 2.7e-09 66.2 147 34.7
arahy.Tifrunner.gnm1.ann1.5NB5PV Arachis hypogaea HOM05D001718 ORTHO05D007949 3.5e-09 65.9 145 36.6
AL5G39300 Arabidopsis lyrata HOM05D001718 ORTHO05D007949 4.6e-09 65.5 148 33.1
Duzib093G0858 Durio zibethinus HOM05D001718 ORTHO05D007949 4.6e-09 65.5 46 71.7
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 4.6e-09 65.5 149 34.2
TWI74G0848 Tripterygium wilfordii HOM05D001718 ORTHO05D007949 4.6e-09 65.5 148 32.4
Manes.09G029500 Manihot esculenta HOM05D001718 ORTHO05D007949 6.0e-09 65.1 148 33.8
Rhsim03G0007600 Rhododendron simsii HOM05D033359 ORTHO05D007254 6.0e-09 65.1 39 82.1
Eucgr.A02402 Eucalyptus grandis HOM05D001718 ORTHO05D007949 7.9e-09 64.7 46 71.7
SalBow6G4514 Salvia bowleyana HOM05D001718 ORTHO05D007949 7.9e-09 64.7 46 71.7
Oeu004010.1 Olea europaea HOM05D001718 ORTHO05D007949 1.0e-08 64.3 46 69.6
GSVIVG01033332001 Vitis vinifera HOM05D001718 ORTHO05D007949 1.0e-08 64.3 148 32.4
CiPaw.09G034600 Carya illinoinensis HOM05D001718 ORTHO05D007949 1.8e-08 63.5 148 33.1
Lj2A378G22 Lonicera japonica HOM05D001718 ORTHO05D007949 3.9e-08 62.4 46 69.6
C06p15110 Brassica napus HOM05D001718 ORTHO05D007949 5.1e-08 62.0 46 67.4
HPP92_022797 Vanilla planifolia HOM05D001718 ORTHO05D007949 5.1e-08 62.0 148 29.7
Carub.0005s2451 Capsella rubella HOM05D001718 ORTHO05D007949 1.5e-07 60.5 50 60.0
A09p21500 Brassica napus HOM05D001317 ORTHO05D001164 1.9e-07 60.1 49 63.3
BraA09t37749Z Brassica rapa HOM05D001317 ORTHO05D001164 1.9e-07 60.1 49 63.3
PSO384G3132 Papaver somniferum HOM05D001718 ORTHO05D007949 3.3e-07 59.3 46 63.0
MBI01_g27617_MAGBIO Magnolia biondii HOM05D001718 ORTHO05D007949 4.3e-07 58.9 46 63.0
Migut.K01237 Erythranthe guttata HOM05D001718 ORTHO05D007949 5.6e-07 58.5 138 31.2
ATR0605G274 Amborella trichopoda HOM05D001718 ORTHO05D007949 9.6e-07 57.8 46 60.9
Lsat_1_v5_gn_2_4801 Lactuca sativa HOM05D001718 ORTHO05D007949 4.8e-06 55.5 46 60.9
CANSAT78G0973 Cannabis sativa HOM05D001718 ORTHO05D007949 6.2e-06 55.1 44 61.4
Zm00001eb381590 Zea mays HOM05D001718 ORTHO05D007949 8.1e-06 54.7 46 58.7


User provided reference genes

Program Settings