Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0024700 Rhododendron simsii HOM05D007273 ORTHO05D009230 4.8e-174 614.4 307 100.0
Rhsim03G0024900 Rhododendron simsii HOM05D007273 ORTHO05D009230 5.8e-127 458.0 307 78.2
vmacro07848 Vaccinium macrocarpon HOM05D007273 ORTHO05D009230 1.5e-111 406.8 307 69.7
Actinidia39224 Actinidia chinensis HOM05D007273 ORTHO05D009230 1.3e-91 340.5 299 64.2
Dinv12487 Davidia involucrata HOM05D007273 ORTHO05D009230 8.7e-91 337.8 285 62.1
TAR369G0984 Trochodendron aralioides HOM05D007273 ORTHO05D009230 1.3e-78 297.4 284 57.0
Nn2g15217 Nelumbo nucifera HOM05D007273 ORTHO05D009230 3.8e-78 295.8 281 56.2
Peaxi162Scf00002g02715 Petunia axillaris HOM05D007273 ORTHO05D009230 6.7e-75 285.0 270 56.7
Lsat_1_v5_gn_9_29100 Lactuca sativa HOM05D007273 ORTHO05D009230 2.5e-74 283.1 291 52.9
Solyc02g087600.3 Solanum lycopersicum HOM05D007273 ORTHO05D009230 9.6e-74 281.2 271 54.2
EL10Ac3g07092 Beta vulgaris HOM05D007273 ORTHO05D009230 2.1e-73 280.0 281 52.3
CAN.G417.4 Capsicum annuum HOM05D007273 ORTHO05D009230 2.1e-73 280.0 270 55.2
Nitab4.5_0000082g0140 Nicotiana tabacum HOM05D007273 ORTHO05D009230 3.7e-73 279.3 271 54.6
PGSC0003DMG401001308 Solanum tuberosum HOM05D007273 ORTHO05D009230 4.8e-73 278.9 271 54.2
Sopen02g032350 Solanum pennellii HOM05D007273 ORTHO05D009230 8.2e-73 278.1 271 54.2
Oeu017941.1 Olea europaea HOM05D007273 ORTHO05D009230 1.4e-72 277.3 278 51.1
MSTRG.6428 Avicennia marina HOM05D007273 ORTHO05D009230 3.1e-72 276.2 278 51.1
Rhsim03G0024400 Rhododendron simsii HOM05D007273 ORTHO05D009230 5.3e-72 275.4 152 90.8
Cc06_g17580 Coffea canephora HOM05D007273 ORTHO05D009230 9.0e-72 274.6 275 52.4
ECA247G0394 Erigeron canadensis HOM05D007273 ORTHO05D009230 9.0e-72 274.6 276 54.0
SalBow6G5536 Salvia bowleyana HOM05D007273 ORTHO05D009230 3.4e-71 272.7 276 52.9
AUR62024452 Chenopodium quinoa HOM05D007273 ORTHO05D009230 4.5e-71 272.3 276 53.6
HanXRQChr05g0128781 Helianthus annuus HOM05D007273 ORTHO05D009230 4.5e-71 272.3 282 52.5
Rhsim03G0024300 Rhododendron simsii HOM05D007273 ORTHO05D009230 7.6e-71 271.6 152 88.8
AUR62026041 Chenopodium quinoa HOM05D007273 ORTHO05D009230 6.5e-70 268.5 266 54.5
Sc25g0005300 Simmondsia chinensis HOM05D007273 ORTHO05D009230 3.6e-68 262.7 304 49.3
DCAR_003245 Daucus carota HOM05D007273 ORTHO05D009230 7.9e-68 261.5 273 51.3
Haze_19853 Corylus avellana HOM05D007273 ORTHO05D009230 5.7e-66 255.4 296 50.3
Migut.J01756 Erythranthe guttata HOM05D007273 ORTHO05D009230 7.4e-66 255.0 259 52.5
Aqoxy1G00330 Aquilegia oxysepala HOM05D007273 ORTHO05D009230 1.3e-65 254.2 282 49.6
Nitab4.5_0010316g0010 Nicotiana tabacum HOM05D007273 ORTHO05D009230 2.2e-65 253.4 287 49.5
CiPaw.09G038500 Carya illinoinensis HOM05D007273 ORTHO05D009230 1.8e-64 250.4 300 48.0
PSO339G1789 Papaver somniferum HOM05D007273 ORTHO05D009230 4.1e-64 249.2 310 47.1
Cfa016813 Carpinus fangiana HOM05D007273 ORTHO05D009230 1.2e-63 247.7 299 49.2
SGA_v2.0_scaffold69G23119 Striga asiatica HOM05D007273 ORTHO05D009230 2.6e-63 246.5 288 46.9
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 5.9e-63 245.4 283 49.1
Lj1g0021019 Lotus japonicus HOM05D007273 ORTHO05D009230 1.9e-61 240.4 304 46.1
CANSAT80G0412 Cannabis sativa HOM05D007273 ORTHO05D009230 3.2e-61 239.6 301 47.2
RcHm_v2.0_Chr3g0482541 Rosa chinensis HOM05D007273 ORTHO05D009230 5.5e-61 238.8 289 47.4
CANSAT80G2704 Cannabis sativa HOM05D007273 ORTHO05D009230 3.6e-60 236.1 300 45.3
Ca_08456_v3 Cicer arietinum L. HOM05D007273 ORTHO05D009230 3.6e-60 236.1 276 48.9
Psat3g072760 Pisum sativum HOM05D007273 ORTHO05D009230 2.3e-59 233.4 288 47.6
Medtr7g091490 Medicago truncatula HOM05D007273 ORTHO05D009230 3.9e-59 232.6 294 47.6
Prupe.7G059600 Prunus persica HOM05D007273 ORTHO05D009230 3.9e-59 232.6 299 47.2
arahy.Tifrunner.gnm1.ann1.J7IQUN Arachis hypogaea HOM05D007273 ORTHO05D009230 5.1e-59 232.3 287 48.1
VMungo1383G0084 Vigna mungo HOM05D007273 ORTHO05D009230 3.3e-58 229.6 297 44.4
Eucgr.A02345 Eucalyptus grandis HOM05D007273 ORTHO05D009230 1.3e-57 227.6 281 45.6
Glyma.03G136600 Glycine max HOM05D007273 ORTHO05D009230 2.2e-57 226.9 283 47.7
Lalb_Chr01g0017311 Lupinus albus HOM05D007273 ORTHO05D009230 1.8e-56 223.8 298 45.0
Phvul.001G131900 Phaseolus vulgaris HOM05D007273 ORTHO05D009230 3.1e-56 223.0 279 44.8
FvH4_6g23860 Fragaria vesca HOM05D007273 ORTHO05D009230 2.6e-55 219.9 286 44.1
FAN05G2271 Fragaria x ananassa HOM05D007273 ORTHO05D009230 4.5e-55 219.2 286 44.1
ClCG04G000150 Citrullus lanatus HOM05D007273 ORTHO05D009230 5.9e-55 218.8 276 46.4
CsaV3_4G011670 Cucumis sativus L. HOM05D007273 ORTHO05D009230 2.9e-54 216.5 290 44.8
MBI17_g14625_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 2.5e-53 213.4 316 40.8
QL07p000584 Quercus lobata HOM05D007273 ORTHO05D009230 3.2e-53 213.0 299 45.8
Sabra06G0036200 Salix brachista HOM05D007273 ORTHO05D009230 2.7e-52 209.9 290 42.8
PGR004G1947 Punica granatum HOM05D007273 ORTHO05D009230 6.1e-52 208.8 247 49.0
SEGI_31103 Sequoiadendron giganteum HOM05D007273 ORTHO05D009230 6.1e-52 208.8 272 43.4
TWI74G1215 Tripterygium wilfordii HOM05D007273 ORTHO05D009230 7.9e-52 208.4 295 41.4
THA.LOC104802102 Tarenaya hassleriana HOM05D007273 ORTHO05D009230 8.8e-51 204.9 285 44.2
Carub.0004s2403 Capsella rubella HOM05D007273 ORTHO05D009230 1.3e-49 201.1 280 43.9
Manes.09G022200 Manihot esculenta HOM05D007273 ORTHO05D009230 1.7e-49 200.7 268 45.1
HPP92_016047 Vanilla planifolia HOM05D007273 ORTHO05D009230 3.7e-49 199.5 276 43.8
Cpa.g.sc92.54 Carica papaya HOM05D007273 ORTHO05D009230 1.1e-48 198.0 280 43.6
Sed0019353 Sechium edule HOM05D007273 ORTHO05D009230 1.1e-48 198.0 285 43.2
Gohir.D09G118000 Gossypium hirsutum HOM05D007273 ORTHO05D009230 1.8e-48 197.2 288 41.0
Gorai.006G136300 Gossypium raimondii HOM05D007273 ORTHO05D009230 3.1e-48 196.4 286 40.9
Potri.006G051600 Populus trichocarpa HOM05D007273 ORTHO05D009230 3.1e-48 196.4 287 42.2
Thecc.05G153100 Theobroma cacao HOM05D007273 ORTHO05D009230 5.3e-48 195.7 299 39.1
COL.COLO4_28286 Corchorus olitorius HOM05D007273 ORTHO05D009230 2.0e-47 193.7 281 41.6
Gohir.A09G121900 Gossypium hirsutum HOM05D007273 ORTHO05D009230 2.0e-47 193.7 285 40.7
Rhsim03G0023900 Rhododendron simsii HOM05D007273 ORTHO05D009230 2.6e-47 193.4 148 69.6
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 4.5e-47 192.6 298 39.6
Thhalv10017127m.g Eutrema salsugineum HOM05D007273 ORTHO05D009230 4.5e-47 192.6 278 42.8
AL4G40060 Arabidopsis lyrata HOM05D007273 ORTHO05D009230 5.9e-47 192.2 283 43.8
CARHR136850 Cardamine hirsuta HOM05D007273 ORTHO05D009230 7.7e-47 191.8 290 41.7
Aa31LG1G23760 Aethionema arabicum HOM05D007273 ORTHO05D009230 1.0e-46 191.4 281 41.6
C04p02970 Brassica napus HOM05D007273 ORTHO05D009230 1.3e-46 191.0 282 42.2
Ciclev10033324m.g Citrus clementina HOM05D007273 ORTHO05D009230 2.2e-46 190.3 294 40.1
Sp4g24020 Schrenkiella parvula HOM05D007273 ORTHO05D009230 5.0e-46 189.1 284 41.2
AT2G41750 Arabidopsis thaliana HOM05D007273 ORTHO05D009230 1.1e-45 188.0 292 41.8
A05p02510 Brassica napus HOM05D007273 ORTHO05D009230 9.4e-45 184.9 282 40.8
BraA05t19244Z Brassica rapa HOM05D007273 ORTHO05D009230 9.4e-45 184.9 282 40.8
BcaNung02834 Brassica carinata HOM05D007273 ORTHO05D009230 1.8e-43 180.6 285 39.6
MBI17_g36895_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 1.8e-43 180.6 143 60.1
Mapoly0023s0152 Marchantia polymorpha HOM05D007273 ORTHO05D009230 5.2e-43 179.1 291 39.2
Pp3c17_17160 Physcomitrium patens HOM05D007273 ORTHO05D009230 8.8e-43 178.3 291 37.5
Os12g0142600 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 7.5e-42 175.3 281 40.2
ATR0626G250 Amborella trichopoda HOM05D007273 ORTHO05D009230 1.7e-41 174.1 342 33.6
Os11g0145100 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 1.4e-40 171.0 281 40.2
Ah.04g151620 Amaranthus hybridus HOM05D007273 ORTHO05D009230 4.2e-37 159.5 298 37.2
unitig_8.g4551 Utricularia gibba HOM05D007273 ORTHO05D009230 1.8e-35 154.1 99 73.7
Hma1.2p1_1611F.1_g293550 Hydrangea macrophylla HOM05D007273 ORTHO05D009230 1.7e-33 147.5 176 47.2
Lju124C41T6 Lonicera japonica HOM05D007273 ORTHO05D009230 2.2e-33 147.1 98 71.4
Zm00001eb163370 Zea mays HOM05D007273 ORTHO05D009230 2.8e-33 146.7 279 36.6
FAN09G1358 Fragaria x ananassa HOM05D007273 ORTHO05D009230 1.1e-29 134.8 138 52.2
SMO240G0020 Selaginella moellendorffii HOM05D007273 ORTHO05D009230 4.0e-27 126.3 263 36.1
CSS0001142 Camellia sinensis var. sinensis HOM05D007273 ORTHO05D009230 1.5e-26 124.4 93 64.5
Glyma.19G139000 Glycine max HOM05D007273 ORTHO05D009230 8.3e-25 118.6 95 60.0
FAN02G1642 Fragaria x ananassa HOM05D007273 ORTHO05D009230 9.5e-21 105.1 189 36.0
AagrBONN_evm.TU.Sc2ySwM_228.793 Anthoceros agrestis HOM05D007273 ORTHO05D009230 9.2e-16 88.6 227 29.5
Actinidia09327 Actinidia chinensis HOM05D007273 ORTHO05D009230 1.1e-13 81.6 73 58.9
MCO07G627 Micromonas commoda HOM05D007273 ORTHO05D009230 3.1e-11 73.6 252 27.8
TPR.G3731 Trifolium pratense HOM05D007273 ORTHO05D009230 5.8e-10 69.3 61 59.0
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 1.0e-06 58.5 272 23.5


User provided reference genes

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