Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0024600 Rhododendron simsii HOM05D007137 ORTHO05D008982 9.9e-132 473.4 230 100.0
Rhsim03G0024800 Rhododendron simsii HOM05D007137 ORTHO05D008982 6.7e-128 460.7 230 97.0
vmacro07849 Vaccinium macrocarpon HOM05D007137 ORTHO05D008982 1.2e-105 386.7 227 84.1
Actinidia09328 Actinidia chinensis HOM05D007137 ORTHO05D008982 2.6e-100 369.0 226 77.9
CSS0026997 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 5.1e-96 354.8 226 77.4
Dinv39605 Davidia involucrata HOM05D007137 ORTHO05D008982 5.7e-95 351.3 226 75.2
Hma1.2p1_2002F.1_g310780 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 7.0e-93 344.4 226 73.5
Cfa016812 Carpinus fangiana HOM05D007137 ORTHO05D008982 2.0e-92 342.8 218 73.4
TAR369G0818 Trochodendron aralioides HOM05D007137 ORTHO05D008982 2.1e-89 332.8 226 72.1
Potri.006G051500 Populus trichocarpa HOM05D007137 ORTHO05D008982 2.7e-89 332.4 208 75.0
Haze_19852 Corylus avellana HOM05D007137 ORTHO05D008982 6.1e-89 331.3 222 70.3
CANSAT80G1960 Cannabis sativa HOM05D007137 ORTHO05D008982 1.4e-88 330.1 225 69.8
Ciclev10005859m.g Citrus clementina HOM05D007137 ORTHO05D008982 1.4e-88 330.1 208 74.5
CANSAT80G0539 Cannabis sativa HOM05D007137 ORTHO05D008982 6.7e-88 327.8 225 69.3
Sc13g0001720 Simmondsia chinensis HOM05D007137 ORTHO05D008982 2.6e-87 325.9 208 70.7
Duzib093G1775 Durio zibethinus HOM05D007137 ORTHO05D008982 3.3e-87 325.5 225 70.2
AUR62024453 Chenopodium quinoa HOM05D007137 ORTHO05D008982 5.7e-87 324.7 205 71.7
Thecc.05G153200 Theobroma cacao HOM05D007137 ORTHO05D008982 2.2e-86 322.8 225 69.8
MSTRG.6429 Avicennia marina HOM05D007137 ORTHO05D008982 3.7e-86 322.0 227 66.5
FAN05G2215 Fragaria x ananassa HOM05D007137 ORTHO05D008982 4.8e-86 321.6 228 66.2
Gohir.A09G122000 Gossypium hirsutum HOM05D007137 ORTHO05D008982 4.8e-86 321.6 225 69.8
EL10Ac3g07093 Beta vulgaris HOM05D007137 ORTHO05D008982 6.3e-86 321.2 208 70.2
Gohir.D09G118100 Gossypium hirsutum HOM05D007137 ORTHO05D008982 2.4e-85 319.3 208 73.1
Gorai.006G136400 Gossypium raimondii HOM05D007137 ORTHO05D008982 2.4e-85 319.3 208 73.1
Nitab4.5_0010636g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 2.4e-85 319.3 210 69.0
CiPaw.09G038400 Carya illinoinensis HOM05D007137 ORTHO05D008982 3.1e-85 318.9 225 67.1
AUR62026042 Chenopodium quinoa HOM05D007137 ORTHO05D008982 4.1e-85 318.5 208 70.2
PGR004G0226 Punica granatum HOM05D007137 ORTHO05D008982 5.3e-85 318.2 209 69.9
TWI74G1615 Tripterygium wilfordii HOM05D007137 ORTHO05D008982 5.3e-85 318.2 218 67.4
AL4G40070 Arabidopsis lyrata HOM05D007137 ORTHO05D008982 9.1e-85 317.4 208 68.8
Prupe.7G059700 Prunus persica HOM05D007137 ORTHO05D008982 9.1e-85 317.4 227 67.0
Cc06_g17570 Coffea canephora HOM05D007137 ORTHO05D008982 1.2e-84 317.0 230 64.3
FAN09G1348 Fragaria x ananassa HOM05D007137 ORTHO05D008982 1.2e-84 317.0 228 66.2
Thhalv10017217m.g Eutrema salsugineum HOM05D007137 ORTHO05D008982 2.0e-84 316.2 216 66.2
FvH4_6g23850 Fragaria vesca HOM05D007137 ORTHO05D008982 4.5e-84 315.1 228 65.8
AT2G41760 Arabidopsis thaliana HOM05D007137 ORTHO05D008982 1.3e-83 313.5 217 66.8
Sopen04g007840 Solanum pennellii HOM05D007137 ORTHO05D008982 1.7e-83 313.2 222 65.8
Nitab4.5_0005195g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 2.9e-83 312.4 210 67.6
Peaxi162Scf00130g00019 Petunia axillaris HOM05D007137 ORTHO05D008982 3.8e-83 312.0 226 63.7
GSVIVG01033260001 Vitis vinifera HOM05D007137 ORTHO05D008982 3.8e-83 312.0 209 69.9
THA.LOC104818226 Tarenaya hassleriana HOM05D007137 ORTHO05D008982 5.0e-83 311.6 206 68.9
CARHR136840 Cardamine hirsuta HOM05D007137 ORTHO05D008982 8.5e-83 310.8 216 64.8
Migut.J01757 Erythranthe guttata HOM05D007137 ORTHO05D008982 8.5e-83 310.8 230 62.2
Solyc04g015760.4 Solanum lycopersicum HOM05D007137 ORTHO05D008982 8.5e-83 310.8 222 65.3
PGSC0003DMG400027277 Solanum tuberosum HOM05D007137 ORTHO05D008982 1.1e-82 310.5 227 63.4
Carub.0004s2404 Capsella rubella HOM05D007137 ORTHO05D008982 1.5e-82 310.1 208 65.9
QL07p000577 Quercus lobata HOM05D007137 ORTHO05D008982 1.9e-82 309.7 224 68.3
HanXRQChr15g0491151 Helianthus annuus HOM05D007137 ORTHO05D008982 5.5e-82 308.1 208 68.8
RcHm_v2.0_Chr3g0482531 Rosa chinensis HOM05D007137 ORTHO05D008982 5.5e-82 308.1 228 64.9
Lsat_1_v5_gn_9_29000 Lactuca sativa HOM05D007137 ORTHO05D008982 9.4e-82 307.4 225 66.7
Hund24707 Selenicereus undatus HOM05D007137 ORTHO05D008982 9.4e-82 307.4 207 69.6
Oeu008913.1 Olea europaea HOM05D007137 ORTHO05D008982 3.6e-81 305.4 218 66.5
Oeu008915.1 Olea europaea HOM05D007137 ORTHO05D008982 3.6e-81 305.4 218 66.5
Sp4g24030 Schrenkiella parvula HOM05D007137 ORTHO05D008982 3.6e-81 305.4 207 67.6
TPR.G10636 Trifolium pratense HOM05D007137 ORTHO05D008982 8.0e-81 304.3 213 67.1
ECA247G4023 Erigeron canadensis HOM05D007137 ORTHO05D008982 2.3e-80 302.8 225 62.7
Nn2g15218 Nelumbo nucifera HOM05D007137 ORTHO05D008982 4.0e-80 302.0 219 64.4
Eucgr.A02346 Eucalyptus grandis HOM05D007137 ORTHO05D008982 1.2e-79 300.4 208 67.3
Glyma.10G097900 Glycine max HOM05D007137 ORTHO05D008982 1.5e-79 300.1 211 68.2
CsaV3_3G039290 Cucumis sativus L. HOM05D007137 ORTHO05D008982 2.6e-79 299.3 218 66.1
Ca_26019_v3 Cicer arietinum L. HOM05D007137 ORTHO05D008982 3.3e-79 298.9 209 67.0
Phvul.007G252600 Phaseolus vulgaris HOM05D007137 ORTHO05D008982 3.3e-79 298.9 211 67.3
Lalb_Chr21g0316491 Lupinus albus HOM05D007137 ORTHO05D008982 7.5e-79 297.7 223 64.1
MD12G1074200 Malus domestica HOM05D007137 ORTHO05D008982 9.7e-79 297.4 227 63.4
Sabra06G0036100 Salix brachista HOM05D007137 ORTHO05D008982 1.7e-78 296.6 208 68.8
Lj5g0009390 Lotus japonicus HOM05D007137 ORTHO05D008982 2.2e-78 296.2 213 67.1
A03p23410 Brassica napus HOM05D007137 ORTHO05D008982 2.8e-78 295.8 222 62.2
BraA03t11558Z Brassica rapa HOM05D007137 ORTHO05D008982 2.8e-78 295.8 222 62.2
C03p27930 Brassica napus HOM05D007137 ORTHO05D008982 6.3e-78 294.7 216 63.0
Sed0021909 Sechium edule HOM05D007137 ORTHO05D008982 2.4e-77 292.7 219 63.5
Medtr7g034355 Medicago truncatula HOM05D007137 ORTHO05D008982 3.1e-77 292.4 213 64.3
MELO3C009672.2 Cucumis melo HOM05D007137 ORTHO05D008982 1.2e-76 290.4 208 67.3
BolC3t15165H Brassica oleracea HOM05D007137 ORTHO05D008982 1.6e-76 290.0 228 59.6
Atru.BG.154.p Acer truncatum HOM05D007137 ORTHO05D008982 2.7e-76 289.3 210 69.0
CAN.G1456.1 Capsicum annuum HOM05D007137 ORTHO05D008982 8.5e-75 284.3 185 69.2
PSO384G0937 Papaver somniferum HOM05D007137 ORTHO05D008982 7.2e-74 281.2 225 62.2
Aqoxy1G00329 Aquilegia oxysepala HOM05D007137 ORTHO05D008982 6.1e-73 278.1 216 63.0
Ah.04g151610 Amaranthus hybridus HOM05D000942 ORTHO05D000918 8.8e-72 274.2 198 63.6
arahy.Tifrunner.gnm1.ann1.QC7DP1 Arachis hypogaea HOM05D007137 ORTHO05D008982 1.2e-71 273.9 207 65.2
CAN.G676.70 Capsicum annuum HOM05D007137 ORTHO05D008982 5.4e-69 265.0 193 64.8
Manes.09G022100 Manihot esculenta HOM05D007137 ORTHO05D008982 5.9e-68 261.5 221 58.8
SalBow6G6768 Salvia bowleyana HOM05D007137 ORTHO05D008982 2.9e-67 259.2 245 56.7
arahy.Tifrunner.gnm1.ann1.F03MXT Arachis hypogaea HOM05D007137 ORTHO05D008982 7.2e-66 254.6 195 65.1
Psat6g120120 Pisum sativum HOM05D007137 ORTHO05D008982 2.3e-64 249.6 159 70.4
SGA_v2.0_scaffold105G30410 Striga asiatica HOM05D007137 ORTHO05D008982 2.3e-64 249.6 195 61.0
Lju124C41G12 Lonicera japonica HOM05D007137 ORTHO05D008982 1.7e-62 243.4 189 62.4
Os05g0387900 Oryza sativa ssp. japonica HOM05D007137 ORTHO05D008982 2.2e-62 243.0 209 57.9
MBI17_g01631_MAGBIO Magnolia biondii HOM05D007137 ORTHO05D008982 3.7e-62 242.3 218 55.5
Aa31LG1G23770 Aethionema arabicum HOM05D007137 ORTHO05D008982 5.4e-61 238.4 172 63.4
CDE02G1742 Ceratophyllum demersum HOM05D007137 ORTHO05D008982 5.4e-61 238.4 174 61.5
CSS0041211 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 1.2e-60 237.3 189 66.1
Cpa.g.sc92.53 Carica papaya HOM05D007137 ORTHO05D008982 4.5e-60 235.3 172 65.1
ClCG10G017100 Citrullus lanatus HOM05D007137 ORTHO05D008982 2.1e-57 226.5 243 51.0
DCAR_020492 Daucus carota HOM05D007137 ORTHO05D008982 8.0e-57 224.6 162 66.7
HPP92_001018 Vanilla planifolia HOM05D007137 ORTHO05D008982 2.3e-56 223.0 196 54.1
ATR0320G015 Amborella trichopoda HOM05D007137 ORTHO05D008982 1.2e-55 220.7 201 53.7
FAN02G0118 Fragaria x ananassa HOM05D007137 ORTHO05D008982 1.1e-50 204.1 130 73.8
Rhsim03G0024200 Rhododendron simsii HOM05D007137 ORTHO05D008982 1.8e-48 196.8 166 65.1
Mapoly0062s0037 Marchantia polymorpha HOM05D007137 ORTHO05D008982 5.8e-47 191.8 210 46.7
Hma1.2p1_2520F.1_g323835 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 6.4e-46 188.3 105 81.0
Pp3c8_16370 Physcomitrium patens HOM05D007137 ORTHO05D008982 6.0e-44 181.8 190 47.9
SMO353G0157 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 4.4e-39 165.6 199 44.2
SMO302G0006 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 4.9e-38 162.2 211 42.2
Zm00001eb286980 Zea mays HOM05D007137 ORTHO05D008982 1.4e-29 134.0 95 64.2
CSS0024811 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 1.6e-25 120.6 81 70.4
VMungo0720G0821 Vigna mungo HOM05D007137 ORTHO05D008982 1.5e-23 114.0 92 59.8
Rhsim03G0024500 Rhododendron simsii HOM05D007137 ORTHO05D008982 1.2e-20 104.4 63 87.3
CBR_g39180 Chara braunii HOM05D007137 ORTHO05D008982 1.9e-18 97.1 70 55.7
SEGI_00420 Sequoiadendron giganteum HOM05D007137 ORTHO05D008982 6.9e-16 88.6 87 48.3
Cre04.g217912 Chlamydomonas reinhardtii HOM05D007137 ORTHO05D008982 1.9e-10 70.5 90 41.1


User provided reference genes

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