Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0023700 Rhododendron simsii HOM05D001309 ORTHO05D020353 3.7e-181 638.3 370 100.0
Rhsim01G0178700 Rhododendron simsii HOM05D001309 ORTHO05D000385 3.7e-104 382.5 274 78.8
Rhsim04G0055300 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.7e-59 232.6 209 61.7
Rhsim04G0054800 Rhododendron simsii HOM05D001309 ORTHO05D000385 2.0e-57 227.3 209 60.3
CSS0011055 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 8.4e-40 168.7 226 43.4
CSS0024690 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 8.4e-40 168.7 226 43.4
CSS0007321 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.4e-39 167.9 226 42.9
CSS0011333 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.4e-39 167.2 225 43.6
CSS0042181 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.4e-39 167.2 226 42.9
CSS0004946 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 4.2e-39 166.4 226 42.9
CSS0017872 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 7.1e-39 165.6 224 42.4
CSS0036507 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.1e-35 154.1 234 39.7
CSS0031187 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 6.2e-35 152.5 226 40.7
Rhsim01G0064900 Rhododendron simsii HOM05D019892 ORTHO05D023103 6.2e-35 152.5 188 47.9
Rhsim03G0184000 Rhododendron simsii HOM05D000683 ORTHO05D000507 1.1e-34 151.8 103 77.7
CSS0000023 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.0e-32 145.2 204 42.2
Rhsim11G0033100 Rhododendron simsii HOM05D008336 ORTHO05D011831 1.5e-28 131.3 92 70.7
CiPaw.16G058400 Carya illinoinensis HOM05D001309 ORTHO05D000385 7.4e-20 102.4 183 38.3
Rhsim05G0119300 Rhododendron simsii HOM05D019892 ORTHO05D023103 4.8e-19 99.8 130 47.7
CiPaw.09G181600 Carya illinoinensis HOM05D001309 ORTHO05D000385 8.2e-19 99.0 182 36.8
CiPaw.10G087600 Carya illinoinensis HOM05D001309 ORTHO05D000385 1.1e-18 98.6 183 37.2
vmacro22341 Vaccinium macrocarpon HOM05D019892 ORTHO05D023103 1.4e-18 98.2 149 38.9
CiPaw.16G105200 Carya illinoinensis HOM05D001309 ORTHO05D000385 5.3e-18 96.3 183 36.6
TWI15G0427 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 9.0e-18 95.5 172 34.9
Rhsim11G0109300 Rhododendron simsii HOM05D019892 ORTHO05D023103 1.3e-16 91.7 96 55.2
TAR362G1088 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.3e-16 91.7 174 35.6
TAR633G1156 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.7e-16 91.3 168 36.3
TAR365G0630 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.8e-16 90.1 162 38.3
Cfa005665 Carpinus fangiana HOM05D020682 ORTHO05D020353 1.4e-15 88.2 152 36.8
TAR344G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.2e-15 87.0 165 39.4
TAR375G1128 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.2e-15 86.7 184 35.3
COL.COLO4_33862 Corchorus olitorius HOM05D001309 ORTHO05D000385 3.6e-14 83.6 199 30.7
TWI53G0470 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 6.1e-14 82.8 151 35.1
TAR376G0246 Trochodendron aralioides HOM05D001309 ORTHO05D000385 6.1e-14 82.8 193 34.2
Nn1g02510 Nelumbo nucifera HOM05D001309 ORTHO05D000385 1.4e-13 81.6 173 32.4
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 6.7e-13 79.3 141 39.7
Rhsim11G0031600 Rhododendron simsii HOM05D000107 ORTHO05D000062 8.8e-13 79.0 69 66.7
TAR633G2694 Trochodendron aralioides HOM05D001309 ORTHO05D000385 8.8e-13 79.0 189 32.3
Rhsim04G0177200 Rhododendron simsii HOM05D019892 ORTHO05D023103 1.5e-12 78.2 95 47.4
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.3e-12 77.0 162 34.0
Nn7g37991 Nelumbo nucifera HOM05D001309 ORTHO05D000385 3.3e-12 77.0 138 34.8
Nn4g24072 Nelumbo nucifera HOM05D001309 ORTHO05D000385 4.3e-12 76.6 135 34.8
MBI11_g30647_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.2e-11 74.3 190 32.6
TAR622G0651 Trochodendron aralioides HOM05D000141 ORTHO05D000385 2.2e-11 74.3 187 27.8
Rhsim01G0178900 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.8e-11 73.9 96 80.2
Nitab4.5_0000804g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.7e-11 73.6 205 32.2
Glyma.03G071600 Glycine max HOM05D001309 ORTHO05D000385 4.8e-11 73.2 131 35.9
TAR365G0123 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.8e-11 73.2 187 27.8
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.8e-11 73.2 187 27.8
Hma1.2p1_0174F.1_g076560 Hydrangea macrophylla HOM05D001309 ORTHO05D000385 8.2e-11 72.4 135 36.3
Lj4g0021808 Lotus japonicus HOM05D001309 ORTHO05D000385 1.1e-10 72.0 161 29.2
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 1.4e-10 71.6 155 33.5
RhsimUnG0210900 Rhododendron simsii HOM05D001309 ORTHO05D000385 1.4e-10 71.6 37 94.6
Os10g0195100 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 1.8e-10 71.2 170 31.8
Os12g0417000 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 1.8e-10 71.2 170 31.8
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.4e-10 70.9 145 35.9
A09p31580 Brassica napus HOM05D008309 ORTHO05D010308 3.1e-10 70.5 136 30.9
COL.COLO4_29078 Corchorus olitorius HOM05D001309 ORTHO05D000385 3.1e-10 70.5 202 27.7
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 3.1e-10 70.5 190 30.5
TPR.G24473 Trifolium pratense HOM05D024240 ORTHO05D000385 4.1e-10 70.1 121 34.7
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 5.3e-10 69.7 141 34.0
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 5.3e-10 69.7 150 30.0
Actinidia39002 Actinidia chinensis HOM05D001309 ORTHO05D000385 6.9e-10 69.3 147 33.3
MBI19_g16213_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 6.9e-10 69.3 187 26.7
BraA10t44443Z Brassica rapa HOM05D008309 ORTHO05D010308 1.2e-09 68.6 175 28.6
vmacro21693 Vaccinium macrocarpon HOM05D000012 ORTHO05D426954 1.2e-09 68.6 121 45.5
COL.COLO4_07670 Corchorus olitorius HOM05D001309 ORTHO05D000385 1.5e-09 68.2 141 32.6
Cfa010280 Carpinus fangiana HOM05D006958 ORTHO05D008814 2.6e-09 67.4 96 38.5
Os08g0367300 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 2.6e-09 67.4 131 33.6
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.6e-09 67.4 187 27.3
COL.COLO4_09996 Corchorus olitorius HOM05D011604 ORTHO05D012513 3.4e-09 67.0 155 33.5
TAR375G0312 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.4e-09 67.0 168 28.0
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 4.5e-09 66.6 166 33.1
Sc11g0006850 Simmondsia chinensis HOM05D001309 ORTHO05D000385 4.5e-09 66.6 139 33.1
ECA234G1533 Erigeron canadensis HOM05D000107 ORTHO05D000062 7.7e-09 65.9 209 28.7
TAR365G0205 Trochodendron aralioides HOM05D000141 ORTHO05D000385 1.0e-08 65.5 181 27.1
Os02g0129000 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 1.3e-08 65.1 190 29.5
Os07g0212400 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 1.3e-08 65.1 190 29.5
Cfa007134 Carpinus fangiana HOM05D020682 ORTHO05D020353 2.2e-08 64.3 80 42.5
Cfa017753 Carpinus fangiana HOM05D020682 ORTHO05D020353 2.9e-08 63.9 81 43.2
COL.COLO4_17726 Corchorus olitorius HOM05D001309 ORTHO05D005970 2.9e-08 63.9 172 33.7
MBI17_g21607_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.9e-08 63.9 210 29.0
TAR365G0008 Trochodendron aralioides HOM05D001163 ORTHO05D001769 2.9e-08 63.9 187 27.3
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 3.8e-08 63.5 141 32.6
MBI01_g25649_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 6.5e-08 62.8 187 25.7
Cpa.g.sc113.47 Carica papaya HOM05D005763 ORTHO05D005970 1.1e-07 62.0 171 31.6
CSS0015098 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.4e-07 61.6 166 26.5
MBI06_g41780_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.4e-07 61.6 143 32.2
COL.COLO4_15532 Corchorus olitorius HOM05D001309 ORTHO05D000385 1.9e-07 61.2 147 30.6
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 2.5e-07 60.8 130 29.2
Dinv04329 Davidia involucrata HOM05D010146 ORTHO05D000385 3.2e-07 60.5 99 32.3
Dinv11732 Davidia involucrata HOM05D010146 ORTHO05D000385 3.2e-07 60.5 99 32.3
Os10g0343500 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 3.2e-07 60.5 190 28.9
TAR628G0437 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.2e-07 60.5 130 32.3
AUR62040758 Chenopodium quinoa HOM05D006468 ORTHO05D006908 4.2e-07 60.1 168 29.8
COL.COLO4_35197 Corchorus olitorius HOM05D001309 ORTHO05D000385 4.2e-07 60.1 78 37.2
MBI14_g03116_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 5.5e-07 59.7 164 25.6
Manes.07G023800 Manihot esculenta HOM05D001309 ORTHO05D005970 5.5e-07 59.7 183 31.1
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 1.2e-06 58.5 200 28.0
Nn7g37626 Nelumbo nucifera HOM05D001309 ORTHO05D000385 1.2e-06 58.5 90 41.1
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 1.6e-06 58.2 117 36.8
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 1.6e-06 58.2 200 27.5
Manes.10G118800 Manihot esculenta HOM05D001309 ORTHO05D000385 1.6e-06 58.2 193 28.5
arahy.Tifrunner.gnm1.ann1.NE3TTV Arachis hypogaea HOM05D002954 ORTHO05D003353 2.1e-06 57.8 140 27.9
COL.COLO4_22621 Corchorus olitorius HOM05D008576 ORTHO05D000385 2.7e-06 57.4 85 36.5
COL.COLO4_15867 Corchorus olitorius HOM05D001309 ORTHO05D004434 3.6e-06 57.0 199 26.1
COL.COLO4_28723 Corchorus olitorius HOM05D046690 ORTHO05D162418 3.6e-06 57.0 80 38.8
Dinv04435 Davidia involucrata HOM05D001309 ORTHO05D013539 3.6e-06 57.0 129 30.2
Dinv12401 Davidia involucrata HOM05D010146 ORTHO05D000385 3.6e-06 57.0 77 39.0
QL05p002086 Quercus lobata HOM05D008595 ORTHO05D000385 3.6e-06 57.0 166 29.5
arahy.Tifrunner.gnm1.ann1.QKP2RW Arachis hypogaea HOM05D002954 ORTHO05D003353 4.7e-06 56.6 119 32.8
C04p48940 Brassica napus HOM05D008309 ORTHO05D010308 4.7e-06 56.6 140 30.7
Dinv12592 Davidia involucrata HOM05D010146 ORTHO05D000385 4.7e-06 56.6 77 39.0
Dinv15672 Davidia involucrata HOM05D010146 ORTHO05D000385 4.7e-06 56.6 77 39.0
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 4.7e-06 56.6 202 29.2
Gohir.D12G043100 Gossypium hirsutum HOM05D001309 ORTHO05D000385 4.7e-06 56.6 93 36.6
Gorai.008G045300 Gossypium raimondii HOM05D001309 ORTHO05D005970 4.7e-06 56.6 93 36.6
Rhsim10G0033700 Rhododendron simsii HOM05D001309 ORTHO05D000385 4.7e-06 56.6 161 26.7
vmacro01714 Vaccinium macrocarpon HOM05D005763 ORTHO05D005970 4.7e-06 56.6 103 37.9
arahy.Tifrunner.gnm1.ann1.R7YZCH Arachis hypogaea HOM05D002954 ORTHO05D003353 7.9e-06 55.8 195 27.7
Zm00001eb308920 Zea mays HOM05D008576 ORTHO05D000385 7.9e-06 55.8 185 29.2
Zm00001eb384730 Zea mays HOM05D008576 ORTHO05D000385 7.9e-06 55.8 172 30.8
Zm00001eb388400 Zea mays HOM05D008576 ORTHO05D000385 7.9e-06 55.8 185 29.2


User provided reference genes

Program Settings