Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0008000 Rhododendron simsii HOM05D008239 ORTHO05D009800 3.5e-283 977.6 500 100.0
Rhsim03G0097700 Rhododendron simsii HOM05D008239 ORTHO05D009800 5.2e-85 319.3 272 66.5
vmacro22053 Vaccinium macrocarpon HOM05D008239 ORTHO05D009800 5.8e-68 262.7 472 40.0
Rhsim06G0198100 Rhododendron simsii HOM05D008239 ORTHO05D009800 1.1e-50 205.3 477 36.5
Dinv25412 Davidia involucrata HOM05D008239 ORTHO05D009800 2.1e-38 164.5 271 42.1
Rhsim06G0231700 Rhododendron simsii HOM05D008239 ORTHO05D009800 5.8e-36 156.4 318 38.1
Dinv27632 Davidia involucrata HOM05D008239 ORTHO05D009800 1.7e-35 154.8 458 31.4
Dinv30487 Davidia involucrata HOM05D008239 ORTHO05D009800 1.7e-35 154.8 315 34.3
Dinv12606 Davidia involucrata HOM05D008239 ORTHO05D009800 3.2e-34 150.6 279 39.1
vmacro07904 Vaccinium macrocarpon HOM05D008239 ORTHO05D009800 7.1e-34 149.4 274 36.5
Dinv12600 Davidia involucrata HOM05D008239 ORTHO05D009800 2.1e-33 147.9 304 37.8
Dinv42357 Davidia involucrata HOM05D008239 ORTHO05D009800 7.9e-33 146.0 467 31.0
Dinv23281 Davidia involucrata HOM05D008239 ORTHO05D009800 1.0e-32 145.6 323 34.1
Hma1.2p1_0120F.1_g057080 Hydrangea macrophylla HOM05D008239 ORTHO05D009800 4.3e-31 140.2 276 40.6
Dinv38088 Davidia involucrata HOM05D008239 ORTHO05D009800 2.4e-29 134.4 329 34.3
Dinv30439 Davidia involucrata HOM05D008239 ORTHO05D009800 3.1e-29 134.0 254 36.6
Dinv23282 Davidia involucrata HOM05D008239 ORTHO05D009800 1.7e-27 128.3 305 32.8
Dinv38087 Davidia involucrata HOM05D008239 ORTHO05D009800 1.7e-27 128.3 337 32.0
Dinv41180 Davidia involucrata HOM05D008239 ORTHO05D009800 1.4e-26 125.2 277 32.5
Dinv27633 Davidia involucrata HOM05D008239 ORTHO05D009800 1.6e-25 121.7 294 31.6
COL.COLO4_17209 Corchorus olitorius HOM05D008239 ORTHO05D009800 2.7e-25 120.9 343 30.9
Rhsim13G0234400 Rhododendron simsii HOM05D008239 ORTHO05D009800 2.7e-25 120.9 259 34.4
Dinv25443 Davidia involucrata HOM05D008239 ORTHO05D009800 3.5e-25 120.6 461 27.8
Dinv41765 Davidia involucrata HOM05D008239 ORTHO05D009800 7.9e-25 119.4 354 29.4
Dinv07268 Davidia involucrata HOM05D008239 ORTHO05D009800 1.0e-24 119.0 316 32.3
CSS0028968 Camellia sinensis var. sinensis HOM05D008239 ORTHO05D009800 2.5e-23 114.4 149 47.0
Dinv25440 Davidia involucrata HOM05D008239 ORTHO05D009800 9.7e-23 112.5 323 31.3
Dinv30486 Davidia involucrata HOM05D010983 ORTHO05D009800 9.7e-23 112.5 299 30.8
Dinv04007 Davidia involucrata HOM05D008239 ORTHO05D009800 2.2e-22 111.3 457 28.2
COL.COLO4_17217 Corchorus olitorius HOM05D008239 ORTHO05D009800 3.7e-22 110.5 283 32.5
Dinv42361 Davidia involucrata HOM05D008239 ORTHO05D009800 1.8e-21 108.2 276 32.6
Dinv42358 Davidia involucrata HOM05D008239 ORTHO05D009800 5.3e-21 106.7 391 28.4
Dinv04006 Davidia involucrata HOM05D008239 ORTHO05D009800 1.2e-20 105.5 287 31.4
Cc02_g10120 Coffea canephora HOM05D008239 ORTHO05D009800 3.8e-19 100.5 210 35.7
Cc03_g02640 Coffea canephora HOM05D008239 ORTHO05D009800 5.0e-19 100.1 300 31.7
COL.COLO4_19868 Corchorus olitorius HOM05D008239 ORTHO05D009800 1.9e-18 98.2 175 40.6
COL.COLO4_04045 Corchorus olitorius HOM05D008239 ORTHO05D009800 2.1e-17 94.7 285 30.9
Cc02_g10110 Coffea canephora HOM05D008239 ORTHO05D009800 2.7e-17 94.4 214 36.0
Cc02_g10150 Coffea canephora HOM05D008239 ORTHO05D009800 2.7e-17 94.4 218 32.1
Rhsim04G0073200 Rhododendron simsii HOM05D059364 ORTHO05D009800 3.6e-17 94.0 290 32.1
PGR142G1798 Punica granatum HOM05D007472 ORTHO05D009477 6.1e-17 93.2 234 34.6
Cfa007540 Carpinus fangiana HOM05D007472 ORTHO05D009477 3.0e-16 90.9 266 30.8
TAR622G0243 Trochodendron aralioides HOM05D007472 ORTHO05D009477 6.7e-16 89.7 224 33.0
Haze_14546 Corylus avellana HOM05D007472 ORTHO05D009477 1.5e-15 88.6 266 30.8
Dinv21189 Davidia involucrata HOM05D008239 ORTHO05D009800 2.0e-15 88.2 379 28.8
Os12g0572800 Oryza sativa ssp. japonica HOM05D007472 ORTHO05D009477 2.0e-15 88.2 223 33.2
Dinv41766 Davidia involucrata HOM05D008239 ORTHO05D009800 4.3e-15 87.0 344 27.3
AUR62039817 Chenopodium quinoa HOM05D007472 ORTHO05D009477 5.7e-15 86.7 285 28.1
Os01g0942900 Oryza sativa ssp. japonica HOM05D013330 ORTHO05D009800 5.7e-15 86.7 267 30.3
Os01g0943800 Oryza sativa ssp. japonica HOM05D013330 ORTHO05D009800 7.4e-15 86.3 267 30.3
Os05g0124000 Oryza sativa ssp. japonica HOM05D013330 ORTHO05D009800 7.4e-15 86.3 271 26.9
MBI14_g12118_MAGBIO Magnolia biondii HOM05D007472 ORTHO05D009477 2.2e-14 84.7 158 38.0
CARHR151910 Cardamine hirsuta HOM05D007472 ORTHO05D009477 4.8e-14 83.6 174 34.5
Os05g0124600 Oryza sativa ssp. japonica HOM05D013330 ORTHO05D009800 1.1e-13 82.4 246 27.2
RcHm_v2.0_Chr2g0168671 Rosa chinensis HOM05D007472 ORTHO05D009477 1.4e-13 82.0 277 29.2
COL.COLO4_12090 Corchorus olitorius HOM05D008239 ORTHO05D009800 1.8e-13 81.6 217 33.2
Sp2g17510 Schrenkiella parvula HOM05D007472 ORTHO05D009477 2.4e-13 81.3 232 33.2
Thecc.04G080300 Theobroma cacao HOM05D007472 ORTHO05D009477 2.4e-13 81.3 180 35.0
Manes.01G090001 Manihot esculenta HOM05D007472 ORTHO05D009477 5.3e-13 80.1 176 34.7
Thhalv10009510m.g Eutrema salsugineum HOM05D007472 ORTHO05D009477 9.1e-13 79.3 176 35.2
THA.LOC104805462 Tarenaya hassleriana HOM05D007472 ORTHO05D009477 9.1e-13 79.3 217 30.9
Zm00001eb029370 Zea mays HOM05D007472 ORTHO05D009477 1.2e-12 79.0 191 33.5
Potri.004G129100 Populus trichocarpa HOM05D007472 ORTHO05D009477 1.5e-12 78.6 164 36.0
AL5G18670 Arabidopsis lyrata HOM05D007472 ORTHO05D009477 2.0e-12 78.2 176 33.0
Os07g0515900 Oryza sativa ssp. japonica HOM05D013330 ORTHO05D009800 2.6e-12 77.8 276 29.3
Thhalv10003677m.g Eutrema salsugineum HOM05D007472 ORTHO05D009477 5.9e-12 76.6 278 29.1
FvH4_1g02370 Fragaria vesca HOM05D007472 ORTHO05D009477 1.0e-11 75.9 165 33.9
Prupe.3G268600 Prunus persica HOM05D007472 ORTHO05D009477 1.0e-11 75.9 231 29.0
Dinv25441 Davidia involucrata HOM05D008239 ORTHO05D009800 1.3e-11 75.5 217 30.0
FAN02G3469 Fragaria x ananassa HOM05D007472 ORTHO05D009477 1.3e-11 75.5 239 30.5
Rhsim03G0009800 Rhododendron simsii HOM05D008239 ORTHO05D009800 1.3e-11 75.5 156 36.5
FAN05G4432 Fragaria x ananassa HOM05D007472 ORTHO05D009477 2.2e-11 74.7 277 29.2
Os07g0515700 Oryza sativa ssp. japonica HOM05D013330 ORTHO05D009800 2.9e-11 74.3 276 27.9
Rhsim03G0003300 Rhododendron simsii HOM05D008239 ORTHO05D009800 2.9e-11 74.3 61 63.9
Aa31LG2G4320 Aethionema arabicum HOM05D007472 ORTHO05D009477 3.8e-11 73.9 160 36.2
Dinv41768 Davidia involucrata HOM05D018862 ORTHO05D009800 3.8e-11 73.9 305 27.9
FvH4_6g48800 Fragaria vesca HOM05D007472 ORTHO05D009477 3.8e-11 73.9 239 30.1
Zm00001eb205000 Zea mays HOM05D013330 ORTHO05D009800 3.8e-11 73.9 165 30.3
CSS0022853 Camellia sinensis var. sinensis HOM05D008239 ORTHO05D009800 6.5e-11 73.2 106 45.3
MD09G1050300 Malus domestica HOM05D007472 ORTHO05D009477 6.5e-11 73.2 231 29.9
COL.COLO4_19875 Corchorus olitorius HOM05D008239 ORTHO05D009800 8.5e-11 72.8 190 32.6
QL04p014554 Quercus lobata HOM05D007472 ORTHO05D009477 8.5e-11 72.8 266 30.1
TWI60G0556 Tripterygium wilfordii HOM05D007472 ORTHO05D009477 8.5e-11 72.8 159 36.5
QL04p014916 Quercus lobata HOM05D007472 ORTHO05D009477 1.9e-10 71.6 262 29.0
SEGI_07251 Sequoiadendron giganteum HOM05D007472 ORTHO05D009477 1.9e-10 71.6 294 25.9
EL10Ac3g05534 Beta vulgaris HOM05D025186 ORTHO05D009800 2.5e-10 71.2 365 25.2
Carub.0005s0743 Capsella rubella HOM05D007472 ORTHO05D009477 3.2e-10 70.9 164 32.9
FAN09G3065 Fragaria x ananassa HOM05D007472 ORTHO05D009477 3.2e-10 70.9 232 31.0
Os10g0102200 Oryza sativa ssp. japonica HOM05D013330 ORTHO05D009800 3.2e-10 70.9 165 33.3
Gohir.D07G211400 Gossypium hirsutum HOM05D007472 ORTHO05D009477 4.2e-10 70.5 158 34.2
Gorai.001G238800 Gossypium raimondii HOM05D007472 ORTHO05D009477 4.2e-10 70.5 158 34.2
EL10Ac2g02974 Beta vulgaris HOM05D007472 ORTHO05D009477 5.5e-10 70.1 288 26.4
AUR62037189 Chenopodium quinoa HOM05D025186 ORTHO05D009800 5.5e-10 70.1 297 29.6
BcaB07g30111 Brassica carinata HOM05D007472 ORTHO05D009477 9.4e-10 69.3 166 35.5
Gohir.A07G205200 Gossypium hirsutum HOM05D007472 ORTHO05D009477 9.4e-10 69.3 158 34.2
FvH4_6g49850 Fragaria vesca HOM05D007472 ORTHO05D009477 2.1e-09 68.2 175 29.1
COL.COLO4_24278 Corchorus olitorius HOM05D008239 ORTHO05D009800 3.6e-09 67.4 127 37.0
Os12g0118800 Oryza sativa ssp. japonica HOM05D013330 ORTHO05D009800 3.6e-09 67.4 289 27.0
A02p36140 Brassica napus HOM05D007472 ORTHO05D009477 7.9e-09 66.2 171 33.3
BraA02t08613Z Brassica rapa HOM05D007472 ORTHO05D009477 7.9e-09 66.2 171 33.3
COL.COLO4_12089 Corchorus olitorius HOM05D008239 ORTHO05D009800 1.0e-08 65.9 270 28.9
SHI06832 Sapria himalayana HOM05D007472 ORTHO05D000001 1.4e-08 65.5 258 27.5
Cc00_g27060 Coffea canephora HOM05D008239 ORTHO05D009800 1.8e-08 65.1 155 32.9
BcaC03g17537 Brassica carinata HOM05D007472 ORTHO05D009477 2.3e-08 64.7 171 32.2
BolC2t11563H Brassica oleracea HOM05D007472 ORTHO05D009477 2.3e-08 64.7 171 32.2
Ciclev10011009m.g Citrus clementina HOM05D007472 ORTHO05D009477 3.0e-08 64.3 133 39.1
COL.COLO4_16500 Corchorus olitorius HOM05D008239 ORTHO05D009800 3.9e-08 63.9 155 34.8
C02p55120 Brassica napus HOM05D007472 ORTHO05D009477 8.8e-08 62.8 171 32.2
COL.COLO4_17213 Corchorus olitorius HOM05D008239 ORTHO05D009800 5.7e-07 60.1 142 31.0


User provided reference genes

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