Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0005300 Rhododendron simsii HOM05D003255 ORTHO05D003705 2.3e-85 318.9 167 100.0
Rhsim09G0004800 Rhododendron simsii HOM05D003255 ORTHO05D003705 1.6e-59 233.0 203 67.5
vmacro12569 Vaccinium macrocarpon HOM05D003255 ORTHO05D003705 1.9e-55 219.5 205 63.9
Rhsim03G0001400 Rhododendron simsii HOM05D003255 ORTHO05D003705 4.5e-41 171.8 141 69.5
Actinidia30555 Actinidia chinensis HOM05D003255 ORTHO05D003705 7.9e-38 161.0 188 55.3
CSS0030388 Camellia sinensis var. sinensis HOM05D003255 ORTHO05D003705 5.9e-33 144.8 206 48.5
Haze_19413 Corylus avellana HOM05D003255 ORTHO05D003705 5.9e-33 144.8 198 53.0
CiPaw.10G000800 Carya illinoinensis HOM05D003255 ORTHO05D003705 5.0e-32 141.7 198 53.0
Cfa016436 Carpinus fangiana HOM05D003255 ORTHO05D003705 1.2e-30 137.1 198 50.5
Lj1A1137T81 Lonicera japonica HOM05D003255 ORTHO05D003705 2.7e-30 136.0 194 50.0
GSVIVG01033393001 Vitis vinifera HOM05D003255 ORTHO05D003705 2.7e-30 136.0 197 51.8
Gohir.D11G268900 Gossypium hirsutum HOM05D003255 ORTHO05D003705 3.6e-30 135.6 193 49.2
Gorai.007G288700 Gossypium raimondii HOM05D003255 ORTHO05D003705 3.6e-30 135.6 193 49.2
TAR623G0824 Trochodendron aralioides HOM05D003255 ORTHO05D003705 3.6e-30 135.6 193 49.2
Hma1.2p1_0152F.1_g067770 Hydrangea macrophylla HOM05D003255 ORTHO05D003705 4.7e-30 135.2 188 53.7
Thecc.05G293900 Theobroma cacao HOM05D003255 ORTHO05D003705 1.0e-29 134.0 193 51.8
Dinv14582 Davidia involucrata HOM05D003255 ORTHO05D003705 1.8e-29 133.3 193 51.3
COL.COLO4_13607 Corchorus olitorius HOM05D003255 ORTHO05D003705 2.3e-29 132.9 193 50.3
Manes.09G141900 Manihot esculenta HOM05D003255 ORTHO05D003705 3.9e-29 132.1 191 48.2
QL07p019702 Quercus lobata HOM05D003255 ORTHO05D003705 3.9e-29 132.1 198 49.5
Ciclev10020997m.g Citrus clementina HOM05D003255 ORTHO05D003705 1.1e-28 130.6 192 49.5
Duzib128G1885 Durio zibethinus HOM05D003255 ORTHO05D003705 1.5e-28 130.2 193 50.8
Gohir.A11G258800 Gossypium hirsutum HOM05D003255 ORTHO05D003705 2.6e-28 129.4 193 47.7
Prupe.3G114100 Prunus persica HOM05D003255 ORTHO05D003705 3.3e-28 129.0 199 46.2
PSO384G0936 Papaver somniferum HOM05D003255 ORTHO05D003705 4.4e-28 128.6 195 46.2
TWI32G0868 Tripterygium wilfordii HOM05D003255 ORTHO05D003705 5.7e-28 128.3 193 46.6
Atru.chr2.1363 Acer truncatum HOM05D003255 ORTHO05D003705 7.4e-28 127.9 198 45.5
Aqoxy2G00585 Aquilegia oxysepala HOM05D003255 ORTHO05D003705 7.4e-28 127.9 193 49.2
Cc06_g22890 Coffea canephora HOM05D003255 ORTHO05D003705 7.4e-28 127.9 204 44.6
PSO339G4182 Papaver somniferum HOM05D003255 ORTHO05D003705 2.8e-27 125.9 195 45.6
SalBow6G7123 Salvia bowleyana HOM05D003255 ORTHO05D003705 8.2e-27 124.4 194 45.4
Cpa.g.sc51.109 Carica papaya HOM05D003255 ORTHO05D003705 1.4e-26 123.6 193 48.2
CSS0029701 Camellia sinensis var. sinensis HOM05D003255 ORTHO05D003705 1.8e-26 123.2 205 46.8
Oeu012405.1 Olea europaea HOM05D003255 ORTHO05D003705 2.4e-26 122.9 200 47.5
MD17G1264700 Malus domestica HOM05D003255 ORTHO05D003705 4.1e-26 122.1 197 45.7
unitig_746.g26891 Utricularia gibba HOM05D000423 ORTHO05D000284 9.1e-26 120.9 189 43.4
Migut.J01892 Erythranthe guttata HOM05D003255 ORTHO05D003705 4.5e-25 118.6 193 43.0
Solyc03g062720.3 Solanum lycopersicum HOM05D003255 ORTHO05D003705 6.5e-24 114.8 176 44.3
Sopen03g015030 Solanum pennellii HOM05D003255 ORTHO05D003705 6.5e-24 114.8 176 44.3
Lalb_Chr22g0359271 Lupinus albus HOM05D003255 ORTHO05D003705 8.5e-24 114.4 196 43.4
Lj1g0023757 Lotus japonicus HOM05D003255 ORTHO05D003705 1.1e-23 114.0 194 44.3
RcHm_v2.0_Chr2g0130821 Rosa chinensis HOM05D003255 ORTHO05D003705 1.1e-23 114.0 197 44.7
CAN.G317.15 Capsicum annuum HOM05D003255 ORTHO05D003705 4.2e-23 112.1 181 44.8
THA.LOC104805763 Tarenaya hassleriana HOM05D003255 ORTHO05D003705 4.2e-23 112.1 201 43.3
arahy.Tifrunner.gnm1.ann1.1MDK5L Arachis hypogaea HOM05D003255 ORTHO05D003705 5.5e-23 111.7 198 43.4
PGSC0003DMG400008639 Solanum tuberosum HOM05D003255 ORTHO05D003705 5.5e-23 111.7 176 44.3
Glyma.19G110700 Glycine max HOM05D003255 ORTHO05D003705 7.2e-23 111.3 197 42.1
FvH4_6g27680 Fragaria vesca HOM05D003255 ORTHO05D003705 1.6e-22 110.2 198 42.9
FAN05G4616 Fragaria x ananassa HOM05D003255 ORTHO05D003705 1.6e-22 110.2 198 42.9
FAN09G1185 Fragaria x ananassa HOM05D003255 ORTHO05D003705 1.6e-22 110.2 198 42.9
FAN14G1820 Fragaria x ananassa HOM05D003255 ORTHO05D003705 1.6e-22 110.2 198 42.9
Nitab4.5_0002825g0020 Nicotiana tabacum HOM05D003255 ORTHO05D003705 1.6e-22 110.2 192 41.1
arahy.Tifrunner.gnm1.ann1.G0TJBI Arachis hypogaea HOM05D003255 ORTHO05D003705 2.1e-22 109.8 194 43.8
FAN02G2038 Fragaria x ananassa HOM05D003255 ORTHO05D006458 3.6e-22 109.0 198 42.4
Potri.019G034100 Populus trichocarpa HOM05D003255 ORTHO05D003705 4.7e-22 108.6 194 44.8
Lsat_1_v5_gn_6_36921 Lactuca sativa HOM05D003255 ORTHO05D003705 6.1e-22 108.2 171 48.0
Medtr7g085490 Medicago truncatula HOM05D003255 ORTHO05D003705 1.0e-21 107.5 197 43.7
Sabra19G0042000 Salix brachista HOM05D003255 ORTHO05D003705 1.0e-21 107.5 193 42.5
Phvul.001G110100 Phaseolus vulgaris HOM05D003255 ORTHO05D003705 1.8e-21 106.7 197 40.1
Psat3g089080 Pisum sativum HOM05D003255 ORTHO05D003705 2.3e-21 106.3 197 43.1
Nitab4.5_0000001g0080 Nicotiana tabacum HOM05D003255 ORTHO05D003705 5.2e-21 105.1 192 41.1
Peaxi162Scf00076g01039 Petunia axillaris HOM05D003255 ORTHO05D003705 8.8e-21 104.4 194 41.2
CANSAT78G2239 Cannabis sativa HOM05D003255 ORTHO05D003705 2.6e-20 102.8 178 38.8
PGR142G0348 Punica granatum HOM05D003255 ORTHO05D003705 2.6e-20 102.8 197 42.6
VMungo1383G0405 Vigna mungo HOM05D003255 ORTHO05D003705 2.6e-20 102.8 197 40.1
AL2G19130 Arabidopsis lyrata HOM05D003255 ORTHO05D003705 3.3e-20 102.4 191 39.8
AUR62032686 Chenopodium quinoa HOM05D003255 ORTHO05D003705 3.3e-20 102.4 208 38.9
Ca_08260_v3 Cicer arietinum L. HOM05D003255 ORTHO05D003705 5.7e-20 101.7 197 42.1
AT1G64770 Arabidopsis thaliana HOM05D003255 ORTHO05D003705 7.4e-20 101.3 188 38.3
AUR62032061 Chenopodium quinoa HOM05D003255 ORTHO05D003705 7.4e-20 101.3 209 39.2
Glyma.16G041700 Glycine max HOM05D003255 ORTHO05D003705 9.7e-20 100.9 198 39.4
CsaV3_3G043290 Cucumis sativus L. HOM05D003255 ORTHO05D003705 4.8e-19 98.6 181 40.3
Eucgr.K01497 Eucalyptus grandis HOM05D003255 ORTHO05D003705 4.8e-19 98.6 158 43.7
ECA233G1992 Erigeron canadensis HOM05D003255 ORTHO05D003705 8.2e-19 97.8 190 41.6
TPR.G5890 Trifolium pratense HOM05D003255 ORTHO05D003705 2.4e-18 96.3 197 41.1
EL10Ac3g06815 Beta vulgaris HOM05D003255 ORTHO05D003705 4.1e-18 95.5 210 38.1
Carub.0002s0974 Capsella rubella HOM05D003255 ORTHO05D003705 4.1e-18 95.5 190 37.4
CARHR287400 Cardamine hirsuta HOM05D003255 ORTHO05D003705 4.1e-18 95.5 189 37.0
HanXRQChr02g0054161 Helianthus annuus HOM05D003255 ORTHO05D003705 7.0e-18 94.7 186 42.5
ClCG10G013330 Citrullus lanatus HOM05D003255 ORTHO05D003705 9.1e-18 94.4 170 41.8
Nn7g35822 Nelumbo nucifera HOM05D003255 ORTHO05D003705 9.1e-18 94.4 154 44.8
Aa31LG2G1910 Aethionema arabicum HOM05D003255 ORTHO05D003705 1.2e-17 94.0 186 38.7
Actinidia22086 Actinidia chinensis HOM05D003255 ORTHO05D003705 1.6e-17 93.6 128 48.4
BcaC06g31750 Brassica carinata HOM05D003255 ORTHO05D003705 1.6e-17 93.6 189 39.2
MELO3C026889.2 Cucumis melo HOM05D003255 ORTHO05D003705 4.5e-17 92.0 181 39.2
Thhalv10018808m.g Eutrema salsugineum HOM05D003255 ORTHO05D003705 5.9e-17 91.7 187 39.6
Os03g0158300 Oryza sativa ssp. japonica HOM05D003255 ORTHO05D003705 7.7e-17 91.3 194 36.6
A06p48260 Brassica napus HOM05D003255 ORTHO05D003705 1.0e-16 90.9 186 38.7
BraA06t27695Z Brassica rapa HOM05D003255 ORTHO05D003705 1.0e-16 90.9 186 38.7
Ah.04g153230 Amaranthus hybridus HOM05D003255 ORTHO05D003705 2.2e-16 89.7 206 37.4
Sp2g07380 Schrenkiella parvula HOM05D003255 ORTHO05D003705 2.9e-16 89.4 192 38.0
Sed0025392 Sechium edule HOM05D003255 ORTHO05D003705 2.9e-16 89.4 184 37.5
BcaC02g10774 Brassica carinata HOM05D003255 ORTHO05D003705 3.2e-15 85.9 145 40.0
C04p25200 Brassica napus HOM05D003255 ORTHO05D003705 3.2e-15 85.9 145 40.0
BolC4t24025H Brassica oleracea HOM05D003255 ORTHO05D003705 3.2e-15 85.9 145 40.0
CDE05G3425 Ceratophyllum demersum HOM05D003255 ORTHO05D003705 3.2e-15 85.9 193 36.3
Zm00001eb403240 Zea mays HOM05D003255 ORTHO05D003705 7.2e-15 84.7 189 36.5
DCAR_013690 Daucus carota HOM05D003255 ORTHO05D003705 6.1e-14 81.6 172 39.0
Carub.0002s0972 Capsella rubella HOM05D003255 ORTHO05D003705 1.8e-13 80.1 168 36.3
ATR0697G035 Amborella trichopoda HOM05D003255 ORTHO05D003705 2.3e-13 79.7 167 37.1
Zm00001eb004410 Zea mays HOM05D003255 ORTHO05D003705 8.8e-13 77.8 152 40.1
THA.LOC104814754 Tarenaya hassleriana HOM05D003255 ORTHO05D003705 1.9e-07 60.1 48 64.6
CDE01G0333 Ceratophyllum demersum HOM05D003255 ORTHO05D003705 3.6e-06 55.8 132 34.8


User provided reference genes

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