Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 0.0e+00 1449.5 755 100.0
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 0.0e+00 1233.8 809 82.8
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 0.0e+00 1134.0 778 78.7
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 5.3e-299 1030.8 738 75.3
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 1.0e-294 1016.5 781 70.4
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 2.2e-292 1008.8 753 74.2
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 9.4e-288 993.4 777 69.9
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 2.1e-287 992.3 778 69.8
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 1.6e-279 966.1 776 68.6
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 2.8e-276 955.3 777 67.8
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 3.7e-276 954.9 777 67.8
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 8.2e-276 953.7 778 67.2
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 1.8e-275 952.6 809 65.3
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 3.1e-275 951.8 778 67.0
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 5.3e-275 951.0 778 66.7
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 2.2e-273 945.7 778 66.6
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 2.9e-273 945.3 778 65.8
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 2.5e-272 942.2 779 66.9
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 7.2e-272 940.6 778 65.7
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 7.5e-269 930.6 776 65.2
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 7.5e-269 930.6 778 64.9
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 1.7e-268 929.5 778 65.9
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 6.3e-268 927.5 778 65.0
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 5.0e-265 917.9 784 64.3
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 8.5e-265 917.1 778 64.3
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 1.1e-264 916.8 778 64.5
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 3.2e-264 915.2 777 64.4
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.7e-263 912.1 837 61.8
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 1.0e-262 910.2 778 64.9
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 4.0e-262 908.3 775 63.6
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 1.2e-261 906.7 778 63.2
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 1.2e-261 906.7 778 65.0
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 1.7e-260 902.9 777 63.8
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.2e-260 902.5 808 62.6
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 4.8e-260 901.4 772 64.6
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 5.4e-259 897.9 774 64.0
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 1.2e-258 896.7 808 61.9
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 1.5e-256 889.8 778 63.5
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 1.9e-256 889.4 780 63.7
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 7.2e-256 887.5 778 63.0
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 1.4e-254 883.2 771 63.4
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 6.8e-254 880.9 758 64.6
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 4.9e-252 874.8 778 62.7
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 6.3e-252 874.4 758 64.5
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 1.8e-251 872.8 777 63.1
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 9.2e-251 870.5 779 62.0
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 1.2e-250 870.2 778 61.3
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 2.0e-250 869.4 779 62.1
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 2.7e-250 869.0 926 56.5
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 1.3e-249 866.7 779 62.4
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 2.9e-249 865.5 780 61.8
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 3.8e-249 865.1 773 62.2
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 5.0e-249 864.8 778 62.6
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.1e-248 863.6 809 61.3
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 9.5e-248 860.5 771 61.6
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 1.6e-247 859.8 778 61.6
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.6e-247 859.8 773 62.0
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 2.8e-247 859.0 772 59.8
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 8.0e-247 857.4 778 61.6
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 3.0e-246 855.5 834 59.1
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 1.2e-245 853.6 805 59.8
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 2.2e-244 849.4 794 59.8
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 1.1e-243 847.0 776 60.8
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 1.4e-243 846.7 777 61.3
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 2.7e-242 842.4 768 59.0
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 3.0e-241 839.0 777 60.7
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 5.6e-240 834.7 801 58.1
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 4.7e-239 831.6 773 59.1
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 5.8e-237 824.7 768 59.1
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 3.9e-233 812.0 722 62.6
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 4.7e-231 805.1 781 58.4
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 4.9e-228 795.0 786 56.9
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 1.4e-222 776.9 786 56.2
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 8.9e-222 774.2 720 59.7
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 8.4e-220 767.7 780 55.5
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 4.6e-218 761.9 792 53.5
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 6.4e-212 741.5 760 55.4
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 6.0e-210 734.9 763 54.1
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 1.0e-209 734.2 763 54.3
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 2.3e-209 733.0 796 52.9
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 4.8e-207 725.3 762 53.8
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 1.8e-206 723.4 778 53.7
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 6.9e-206 721.5 762 52.8
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 6.9e-206 721.5 767 54.2
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 7.6e-205 718.0 777 53.0
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 2.3e-201 706.4 798 51.3
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 9.0e-198 694.5 767 52.7
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 7.6e-197 691.4 655 59.8
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 1.4e-190 670.6 786 52.0
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 3.1e-190 669.5 762 48.8
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 3.0e-185 652.9 771 50.5
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 5.1e-185 652.1 665 57.1
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.4e-182 644.0 434 77.2
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 5.3e-174 615.5 615 58.5
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 1.0e-172 611.3 706 49.9
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 3.2e-171 606.3 782 47.6
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 3.2e-171 606.3 782 47.6
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 3.2e-171 606.3 782 47.6
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 6.9e-166 588.6 773 45.4
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 7.7e-165 585.1 741 47.6
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 4.2e-163 579.3 847 43.1
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 3.6e-162 576.2 528 65.2
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 1.6e-157 560.8 548 58.6
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 6.5e-156 555.4 635 53.1
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 4.0e-145 519.6 399 67.2
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 3.7e-143 513.1 762 41.9
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 5.4e-142 509.2 462 56.9
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.3e-140 504.6 516 58.7
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 1.7e-140 504.2 596 48.0
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 1.0e-129 468.4 570 51.8
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 9.2e-118 428.7 260 79.6
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 1.9e-99 367.9 591 42.6
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 1.9e-86 324.7 557 41.3
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 1.6e-82 311.6 351 49.3
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 9.6e-75 285.8 194 68.6
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 1.8e-73 281.6 254 63.4
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 3.9e-68 263.8 187 72.7
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.4e-62 245.4 143 81.1
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.2e-53 215.7 118 91.5
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 8.2e-50 203.0 142 69.0
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 1.1e-49 202.6 142 68.3
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 1.6e-45 188.7 131 68.7
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 8.8e-44 183.0 143 61.5
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 1.2e-37 162.5 99 76.8
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 7.5e-35 153.3 93 84.9
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 1.3e-31 142.5 86 77.9
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 5.5e-30 137.1 157 44.6
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 2.2e-26 125.2 74 82.4
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 6.3e-26 123.6 91 65.9
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 6.3e-26 123.6 100 63.0
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 5.4e-25 120.6 384 28.4
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 2.5e-22 111.7 90 54.4
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 2.5e-22 111.7 90 54.4
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 7.0e-17 93.6 531 21.7
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 1.6e-16 92.4 124 41.1
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 5.9e-16 90.5 218 29.4
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 3.8e-15 87.8 218 31.7
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 5.8e-11 73.9 47 74.5
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.2e-08 66.2 58 53.4
Hund07844 Selenicereus undatus HOM05D004031 ORTHO05D006678 7.8e-08 63.5 65 53.8
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 6.6e-07 60.5 70 45.7


User provided reference genes

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