Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0001400 Rhododendron simsii HOM05D003255 ORTHO05D003705 1.2e-112 409.8 207 100.0
Rhsim09G0004800 Rhododendron simsii HOM05D003255 ORTHO05D003705 7.4e-78 294.3 359 50.7
vmacro12569 Vaccinium macrocarpon HOM05D003255 ORTHO05D003705 1.4e-73 280.0 371 47.2
DCAR_013690 Daucus carota HOM05D003255 ORTHO05D003705 2.0e-46 189.9 321 38.6
CiPaw.10G000800 Carya illinoinensis HOM05D003255 ORTHO05D003705 1.7e-45 186.8 371 37.2
Cc06_g22890 Coffea canephora HOM05D003255 ORTHO05D003705 2.2e-45 186.4 371 35.0
Gohir.D11G268900 Gossypium hirsutum HOM05D003255 ORTHO05D003705 3.7e-45 185.7 368 35.3
Gorai.007G288700 Gossypium raimondii HOM05D003255 ORTHO05D003705 3.7e-45 185.7 368 35.3
Duzib128G1885 Durio zibethinus HOM05D003255 ORTHO05D003705 1.8e-44 183.3 368 37.0
Gohir.A11G258800 Gossypium hirsutum HOM05D003255 ORTHO05D003705 3.1e-44 182.6 366 36.3
Manes.09G141900 Manihot esculenta HOM05D003255 ORTHO05D003705 7.0e-44 181.4 370 34.3
Lj1A1137T81 Lonicera japonica HOM05D003255 ORTHO05D003705 1.6e-43 180.3 370 35.9
Haze_19413 Corylus avellana HOM05D003255 ORTHO05D003705 2.7e-43 179.5 370 35.4
Thecc.05G293900 Theobroma cacao HOM05D003255 ORTHO05D003705 4.5e-43 178.7 366 36.9
GSVIVG01033393001 Vitis vinifera HOM05D003255 ORTHO05D003705 1.0e-42 177.6 370 37.3
COL.COLO4_13607 Corchorus olitorius HOM05D003255 ORTHO05D003705 1.3e-42 177.2 368 35.3
Lalb_Chr22g0359271 Lupinus albus HOM05D003255 ORTHO05D003705 2.3e-42 176.4 364 36.0
Oeu012405.1 Olea europaea HOM05D003255 ORTHO05D003705 3.8e-42 175.6 369 36.3
RcHm_v2.0_Chr2g0130821 Rosa chinensis HOM05D003255 ORTHO05D003705 6.6e-42 174.9 369 35.0
SalBow6G7123 Salvia bowleyana HOM05D003255 ORTHO05D003705 6.6e-42 174.9 355 37.2
Prupe.3G114100 Prunus persica HOM05D003255 ORTHO05D003705 1.5e-41 173.7 370 34.1
Solyc03g062720.3 Solanum lycopersicum HOM05D003255 ORTHO05D003705 1.5e-41 173.7 352 36.1
Sopen03g015030 Solanum pennellii HOM05D003255 ORTHO05D003705 1.5e-41 173.7 352 34.9
Rhsim03G0005300 Rhododendron simsii HOM05D003255 ORTHO05D003705 1.9e-41 173.3 141 69.5
Ciclev10020997m.g Citrus clementina HOM05D003255 ORTHO05D003705 2.5e-41 172.9 358 34.9
Cfa016436 Carpinus fangiana HOM05D003255 ORTHO05D003705 3.3e-41 172.6 369 34.7
Cpa.g.sc51.109 Carica papaya HOM05D003255 ORTHO05D003705 7.3e-41 171.4 368 33.4
Lj1g0023757 Lotus japonicus HOM05D003255 ORTHO05D003705 7.3e-41 171.4 368 34.8
PGSC0003DMG400008639 Solanum tuberosum HOM05D003255 ORTHO05D003705 9.5e-41 171.0 352 35.8
QL07p019702 Quercus lobata HOM05D003255 ORTHO05D003705 1.2e-40 170.6 371 35.0
TWI32G0868 Tripterygium wilfordii HOM05D003255 ORTHO05D003705 1.6e-40 170.2 372 32.8
FAN05G4616 Fragaria x ananassa HOM05D003255 ORTHO05D003705 2.1e-40 169.9 370 34.1
FAN09G1185 Fragaria x ananassa HOM05D003255 ORTHO05D003705 2.1e-40 169.9 370 34.1
Phvul.001G110100 Phaseolus vulgaris HOM05D003255 ORTHO05D003705 6.1e-40 168.3 369 32.2
TAR623G0824 Trochodendron aralioides HOM05D003255 ORTHO05D003705 8.0e-40 167.9 369 34.1
Glyma.19G110700 Glycine max HOM05D003255 ORTHO05D003705 1.4e-39 167.2 369 33.6
Hma1.2p1_0152F.1_g067770 Hydrangea macrophylla HOM05D003255 ORTHO05D003705 1.4e-39 167.2 351 36.8
Potri.019G034100 Populus trichocarpa HOM05D003255 ORTHO05D003705 2.3e-39 166.4 370 34.1
arahy.Tifrunner.gnm1.ann1.G0TJBI Arachis hypogaea HOM05D003255 ORTHO05D003705 4.0e-39 165.6 370 33.5
CSS0029701 Camellia sinensis var. sinensis HOM05D003255 ORTHO05D003705 4.0e-39 165.6 358 36.0
Psat3g089080 Pisum sativum HOM05D003255 ORTHO05D003705 4.0e-39 165.6 369 33.3
CAN.G317.15 Capsicum annuum HOM05D003255 ORTHO05D003705 6.8e-39 164.9 366 33.3
arahy.Tifrunner.gnm1.ann1.1MDK5L Arachis hypogaea HOM05D003255 ORTHO05D003705 1.2e-38 164.1 368 33.7
Medtr7g085490 Medicago truncatula HOM05D003255 ORTHO05D003705 1.2e-38 164.1 367 34.9
VMungo1383G0405 Vigna mungo HOM05D003255 ORTHO05D003705 1.2e-38 164.1 367 34.1
Sabra19G0042000 Salix brachista HOM05D003255 ORTHO05D003705 2.0e-38 163.3 370 33.0
MD17G1264700 Malus domestica HOM05D003255 ORTHO05D003705 4.4e-38 162.2 371 33.2
Peaxi162Scf00076g01039 Petunia axillaris HOM05D003255 ORTHO05D003705 4.4e-38 162.2 379 32.7
Ca_08260_v3 Cicer arietinum L. HOM05D003255 ORTHO05D003705 5.8e-38 161.8 367 34.1
Aqoxy2G00585 Aquilegia oxysepala HOM05D003255 ORTHO05D003705 7.5e-38 161.4 372 33.9
Actinidia30555 Actinidia chinensis HOM05D003255 ORTHO05D003705 9.8e-38 161.0 146 59.6
Atru.chr2.1363 Acer truncatum HOM05D003255 ORTHO05D003705 2.2e-37 159.8 372 32.0
Nitab4.5_0000001g0080 Nicotiana tabacum HOM05D003255 ORTHO05D003705 6.4e-37 158.3 358 33.5
Migut.J01892 Erythranthe guttata HOM05D003255 ORTHO05D003705 1.4e-36 157.1 358 33.5
Glyma.16G041700 Glycine max HOM05D003255 ORTHO05D003705 2.4e-36 156.4 370 32.2
FAN14G1820 Fragaria x ananassa HOM05D003255 ORTHO05D003705 3.2e-36 156.0 362 32.9
FAN02G2038 Fragaria x ananassa HOM05D003255 ORTHO05D006458 7.0e-36 154.8 367 32.2
unitig_746.g26891 Utricularia gibba HOM05D000423 ORTHO05D000284 9.2e-36 154.5 353 33.4
Lsat_1_v5_gn_6_36921 Lactuca sativa HOM05D003255 ORTHO05D003705 2.0e-35 153.3 375 33.3
Nitab4.5_0002825g0020 Nicotiana tabacum HOM05D003255 ORTHO05D003705 4.6e-35 152.1 360 31.1
Sed0025392 Sechium edule HOM05D003255 ORTHO05D003705 1.7e-34 150.2 370 31.1
PSO384G0936 Papaver somniferum HOM05D003255 ORTHO05D003705 2.3e-34 149.8 372 30.9
ECA233G1992 Erigeron canadensis HOM05D003255 ORTHO05D003705 6.6e-34 148.3 366 31.1
HanXRQChr02g0054161 Helianthus annuus HOM05D003255 ORTHO05D003705 1.5e-33 147.1 348 34.2
TPR.G5890 Trifolium pratense HOM05D003255 ORTHO05D003705 1.9e-33 146.7 362 32.3
PGR142G0348 Punica granatum HOM05D003255 ORTHO05D003705 4.3e-33 145.6 371 31.5
PSO339G4182 Papaver somniferum HOM05D003255 ORTHO05D003705 7.3e-33 144.8 372 30.4
CSS0030388 Camellia sinensis var. sinensis HOM05D003255 ORTHO05D003705 4.7e-32 142.1 153 53.6
CsaV3_3G043290 Cucumis sativus L. HOM05D003255 ORTHO05D003705 4.7e-32 142.1 344 31.4
THA.LOC104805763 Tarenaya hassleriana HOM05D003255 ORTHO05D003705 1.4e-31 140.6 371 31.0
Ah.04g153230 Amaranthus hybridus HOM05D003255 ORTHO05D003705 3.1e-31 139.4 373 32.2
Dinv14582 Davidia involucrata HOM05D003255 ORTHO05D003705 3.1e-31 139.4 151 55.6
ClCG10G013330 Citrullus lanatus HOM05D003255 ORTHO05D003705 4.0e-31 139.0 320 33.8
Eucgr.K01497 Eucalyptus grandis HOM05D003255 ORTHO05D003705 4.0e-31 139.0 337 29.4
FvH4_6g27680 Fragaria vesca HOM05D003255 ORTHO05D003705 4.0e-31 139.0 364 31.0
MELO3C026889.2 Cucumis melo HOM05D003255 ORTHO05D003705 1.5e-30 137.1 362 30.7
AUR62032686 Chenopodium quinoa HOM05D003255 ORTHO05D003705 2.6e-30 136.3 362 31.2
CANSAT78G2239 Cannabis sativa HOM05D003255 ORTHO05D003705 1.7e-29 133.7 387 28.2
AUR62032061 Chenopodium quinoa HOM05D003255 ORTHO05D003705 2.9e-29 132.9 362 30.1
CDE05G3425 Ceratophyllum demersum HOM05D003255 ORTHO05D003705 3.7e-29 132.5 371 28.8
EL10Ac3g06815 Beta vulgaris HOM05D003255 ORTHO05D003705 8.3e-29 131.3 370 29.5
Thhalv10018808m.g Eutrema salsugineum HOM05D003255 ORTHO05D003705 8.3e-29 131.3 351 30.8
Nn7g35822 Nelumbo nucifera HOM05D003255 ORTHO05D003705 2.4e-28 129.8 334 30.8
AL2G19130 Arabidopsis lyrata HOM05D003255 ORTHO05D003705 3.2e-28 129.4 370 28.6
Sp2g07380 Schrenkiella parvula HOM05D003255 ORTHO05D003705 4.1e-28 129.0 366 29.8
Carub.0002s0974 Capsella rubella HOM05D003255 ORTHO05D003705 9.2e-28 127.9 371 28.8
CARHR287400 Cardamine hirsuta HOM05D003255 ORTHO05D003705 1.0e-26 124.4 356 31.2
ATR0697G035 Amborella trichopoda HOM05D003255 ORTHO05D003705 2.3e-26 123.2 343 29.7
BcaC06g31750 Brassica carinata HOM05D003255 ORTHO05D003705 3.0e-26 122.9 369 29.0
Aa31LG2G1910 Aethionema arabicum HOM05D003255 ORTHO05D003705 1.9e-25 120.2 353 29.5
Os03g0158300 Oryza sativa ssp. japonica HOM05D003255 ORTHO05D003705 1.9e-25 120.2 373 25.5
Actinidia22086 Actinidia chinensis HOM05D003255 ORTHO05D003705 8.1e-24 114.8 297 29.3
BcaC02g10774 Brassica carinata HOM05D003255 ORTHO05D003705 1.1e-23 114.4 353 29.7
C04p25200 Brassica napus HOM05D003255 ORTHO05D003705 1.1e-23 114.4 353 29.7
AT1G64770 Arabidopsis thaliana HOM05D003255 ORTHO05D003705 8.9e-23 111.3 145 43.4
Zm00001eb004410 Zea mays HOM05D003255 ORTHO05D003705 8.3e-21 104.8 320 26.6
BolC4t24025H Brassica oleracea HOM05D003255 ORTHO05D003705 1.9e-20 103.6 382 27.7
CDE01G0333 Ceratophyllum demersum HOM05D003255 ORTHO05D003705 5.4e-20 102.1 94 54.3
Hund24838 Selenicereus undatus HOM05D003255 ORTHO05D003705 4.6e-19 99.0 64 67.2
A06p48260 Brassica napus HOM05D003255 ORTHO05D003705 6.0e-19 98.6 128 43.8
BraA06t27695Z Brassica rapa HOM05D003255 ORTHO05D003705 6.0e-19 98.6 128 43.8
Carub.0002s0972 Capsella rubella HOM05D003255 ORTHO05D003705 3.3e-17 92.8 346 28.0
Zm00001eb403240 Zea mays HOM05D003255 ORTHO05D003705 2.9e-13 79.7 148 34.5
HanXRQChr13g0398041 Helianthus annuus HOM05D003255 ORTHO05D003705 4.7e-08 62.4 56 46.4
Thecc.05G293800 Theobroma cacao HOM05D003255 ORTHO05D003705 4.7e-08 62.4 65 41.5
Gohir.D11G268800 Gossypium hirsutum HOM05D003255 ORTHO05D003705 1.4e-07 60.8 56 44.6
Gorai.007G288600 Gossypium raimondii HOM05D003255 ORTHO05D003705 1.4e-07 60.8 56 44.6
Potri.019G034000 Populus trichocarpa HOM05D003255 ORTHO05D003705 1.4e-07 60.8 56 46.4
Gohir.A11G258700 Gossypium hirsutum HOM05D003255 ORTHO05D003705 1.8e-07 60.5 56 44.6
Sabra19G0041900 Salix brachista HOM05D003255 ORTHO05D003705 2.4e-07 60.1 56 44.6
Aqoxy2G00586 Aquilegia oxysepala HOM05D003255 ORTHO05D003705 6.9e-07 58.5 54 44.4
Lsat_1_v5_gn_6_36901 Lactuca sativa HOM05D003255 ORTHO05D003705 6.9e-07 58.5 56 42.9
MD14G1002400 Malus domestica HOM05D003255 ORTHO05D003705 6.9e-07 58.5 56 42.9
Prupe.7G003600 Prunus persica HOM05D003255 ORTHO05D003705 6.9e-07 58.5 56 44.6
CSS0017996 Camellia sinensis var. sinensis HOM05D003255 ORTHO05D003705 9.0e-07 58.2 56 41.1
Lj2g0018565 Lotus japonicus HOM05D003255 ORTHO05D003705 9.0e-07 58.2 56 42.9
Atru.chr2.1364 Acer truncatum HOM05D003255 ORTHO05D003705 1.5e-06 57.4 56 41.1
Manes.09G142000 Manihot esculenta HOM05D003255 ORTHO05D003705 1.5e-06 57.4 58 39.7
unitig_37.g12787 Utricularia gibba HOM05D003255 ORTHO05D003705 1.5e-06 57.4 76 39.5
Actinidia30556 Actinidia chinensis HOM05D003255 ORTHO05D003705 2.0e-06 57.0 56 44.6
PSO339G1718 Papaver somniferum HOM05D003255 ORTHO05D003705 2.6e-06 56.6 56 41.1
Sed0011624 Sechium edule HOM05D003255 ORTHO05D003705 3.4e-06 56.2 56 42.9
FvH4_1g28070 Fragaria vesca HOM05D003255 ORTHO05D003705 4.4e-06 55.8 56 41.1
FAN19G2054 Fragaria x ananassa HOM05D003255 ORTHO05D003705 4.4e-06 55.8 56 41.1
RcHm_v2.0_Chr3g0497181 Rosa chinensis HOM05D003255 ORTHO05D003705 4.4e-06 55.8 56 42.9
Eucgr.K01496 Eucalyptus grandis HOM05D003255 ORTHO05D003705 5.8e-06 55.5 56 42.9
Os03g0748300 Oryza sativa ssp. japonica HOM05D003255 ORTHO05D003705 5.8e-06 55.5 58 44.8
ATR0697G052 Amborella trichopoda HOM05D003255 ORTHO05D003705 7.6e-06 55.1 48 50.0
SEGI_06106 Sequoiadendron giganteum HOM05D003255 ORTHO05D003705 7.6e-06 55.1 106 34.9
vmacro12570 Vaccinium macrocarpon HOM05D003255 ORTHO05D003705 7.6e-06 55.1 56 39.3


User provided reference genes

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