Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 1.4e-87 326.2 163 100.0
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 1.2e-33 147.1 161 59.6
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 7.5e-33 144.4 161 59.0
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 5.2e-26 121.7 160 48.8
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 2.2e-24 116.3 136 51.5
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 2.2e-24 116.3 159 45.9
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 3.7e-24 115.5 149 51.0
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 8.3e-24 114.4 160 44.4
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 1.4e-23 113.6 163 47.2
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 2.4e-23 112.8 115 54.8
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 4.1e-23 112.1 101 59.4
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 4.1e-23 112.1 101 59.4
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 4.1e-23 112.1 118 50.8
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 5.4e-23 111.7 163 47.9
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 5.4e-23 111.7 161 45.3
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 5.4e-23 111.7 158 44.9
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 5.4e-23 111.7 148 46.6
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 2.0e-22 109.8 164 46.3
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 2.0e-22 109.8 122 51.6
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 2.0e-22 109.8 133 48.1
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 2.7e-22 109.4 158 46.2
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 4.5e-22 108.6 118 55.9
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 5.9e-22 108.2 122 50.0
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 7.8e-22 107.8 167 44.3
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 7.8e-22 107.8 117 54.7
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 7.8e-22 107.8 162 42.6
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.7e-21 106.7 163 44.8
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 2.3e-21 106.3 135 47.4
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 3.9e-21 105.5 177 44.1
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 3.9e-21 105.5 160 43.1
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 6.6e-21 104.8 155 43.9
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 1.1e-20 104.0 149 47.0
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.9e-20 103.2 147 44.9
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 1.9e-20 103.2 144 46.5
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 2.5e-20 102.8 167 44.9
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 3.3e-20 102.4 164 40.9
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 4.3e-20 102.1 160 45.6
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 5.6e-20 101.7 147 44.9
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 5.6e-20 101.7 160 45.6
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 5.6e-20 101.7 160 45.0
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 7.3e-20 101.3 120 47.5
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 7.3e-20 101.3 147 44.2
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 7.3e-20 101.3 137 45.3
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 9.5e-20 100.9 126 47.6
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 1.2e-19 100.5 143 46.2
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 1.6e-19 100.1 135 49.6
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 1.6e-19 100.1 143 43.4
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 2.1e-19 99.8 154 46.1
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 2.1e-19 99.8 145 44.8
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 2.1e-19 99.8 135 44.4
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.8e-19 99.4 148 45.3
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 2.8e-19 99.4 103 53.4
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 2.8e-19 99.4 156 44.2
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 3.6e-19 99.0 148 43.2
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 3.6e-19 99.0 148 43.2
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 3.6e-19 99.0 149 41.6
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 3.6e-19 99.0 153 40.5
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 3.6e-19 99.0 133 46.6
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 3.6e-19 99.0 147 43.5
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 6.1e-19 98.2 156 40.4
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 8.0e-19 97.8 135 42.2
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 1.4e-18 97.1 133 45.1
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.4e-18 97.1 162 43.8
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.8e-18 96.7 148 43.2
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 1.8e-18 96.7 138 42.8
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 2.3e-18 96.3 146 43.8
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 2.3e-18 96.3 150 40.0
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 3.1e-18 95.9 116 48.3
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 3.1e-18 95.9 148 43.2
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 4.0e-18 95.5 133 42.1
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 5.2e-18 95.1 113 46.9
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 5.2e-18 95.1 157 42.0
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 5.2e-18 95.1 158 43.0
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 5.2e-18 95.1 170 41.2
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 6.8e-18 94.7 154 39.0
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 6.8e-18 94.7 163 43.6
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 6.8e-18 94.7 133 46.6
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 6.8e-18 94.7 133 46.6
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.2e-17 94.0 168 42.3
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 1.2e-17 94.0 155 41.3
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 1.5e-17 93.6 163 42.9
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 1.5e-17 93.6 129 44.2
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 2.0e-17 93.2 117 47.9
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 2.0e-17 93.2 149 40.9
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 2.0e-17 93.2 92 52.2
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 2.0e-17 93.2 92 52.2
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 2.0e-17 93.2 133 43.6
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 3.4e-17 92.4 121 45.5
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 3.4e-17 92.4 152 40.1
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 3.4e-17 92.4 153 39.9
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 4.4e-17 92.0 117 47.9
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 4.4e-17 92.0 141 42.6
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 5.8e-17 91.7 127 42.5
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 5.8e-17 91.7 117 47.9
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 5.8e-17 91.7 113 50.4
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 5.8e-17 91.7 146 39.7
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 7.5e-17 91.3 168 40.5
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 7.5e-17 91.3 127 44.9
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 7.5e-17 91.3 121 43.8
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 9.8e-17 90.9 109 45.0
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 1.3e-16 90.5 153 38.6
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 1.3e-16 90.5 153 38.6
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.3e-16 90.5 162 39.5
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 1.7e-16 90.1 123 44.7
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 2.2e-16 89.7 117 47.0
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 2.2e-16 89.7 117 47.0
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 2.9e-16 89.4 153 38.6
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 2.9e-16 89.4 153 38.6
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 2.9e-16 89.4 128 43.8
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 4.9e-16 88.6 122 42.6
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 4.9e-16 88.6 128 42.2
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 6.4e-16 88.2 118 47.5
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 6.4e-16 88.2 123 41.5
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 8.3e-16 87.8 166 42.8
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.4e-15 87.0 147 39.5
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 1.4e-15 87.0 126 41.3
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 3.2e-15 85.9 124 44.4
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 3.2e-15 85.9 124 44.4
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 3.2e-15 85.9 124 44.4
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 3.2e-15 85.9 159 39.6
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 4.1e-15 85.5 152 37.5
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 7.0e-15 84.7 144 39.6
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 1.2e-14 84.0 118 43.2
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 1.2e-14 84.0 118 43.2
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 1.6e-14 83.6 131 42.7
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 2.0e-14 83.2 154 37.0
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 3.5e-14 82.4 110 50.9
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 7.8e-14 81.3 116 42.2
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 7.8e-14 81.3 157 35.7
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 3.9e-13 79.0 75 56.0
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 1.6e-11 73.6 75 52.0
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 3.6e-11 72.4 147 36.7
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 3.4e-09 65.9 119 37.0
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 9.8e-09 64.3 64 51.6
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 8.3e-08 61.2 114 36.0
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 1.4e-07 60.5 116 36.2
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 9.2e-07 57.8 89 40.4
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 3.5e-06 55.8 91 40.7
Zm00001eb089560 Zea mays HOM05D005336 ORTHO05D006511 7.8e-06 54.7 92 37.0


User provided reference genes

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