Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0253000 Rhododendron simsii HOM05D007467 ORTHO05D009441 1.5e-157 559.7 323 100.0
vmacro11497 Vaccinium macrocarpon HOM05D007467 ORTHO05D009441 6.5e-89 331.6 270 79.3
CSS0030138 Camellia sinensis var. sinensis HOM05D007467 ORTHO05D009441 2.5e-64 250.0 248 66.9
Thecc.03G219300 Theobroma cacao HOM05D007467 ORTHO05D009441 9.2e-59 231.5 264 63.3
Duzib084G1076 Durio zibethinus HOM05D007467 ORTHO05D009441 1.9e-56 223.8 258 57.0
Peaxi162Scf00074g00113 Petunia axillaris HOM05D007467 ORTHO05D009441 2.5e-56 223.4 266 60.9
COL.COLO4_10812 Corchorus olitorius HOM05D007467 ORTHO05D009441 4.0e-54 216.1 240 53.8
Gohir.A12G240800 Gossypium hirsutum HOM05D007467 ORTHO05D009441 4.0e-54 216.1 240 55.8
Prupe.5G131500 Prunus persica HOM05D007467 ORTHO05D009441 4.0e-54 216.1 310 53.5
MSTRG.13707 Avicennia marina HOM05D007467 ORTHO05D009441 8.9e-54 214.9 251 63.3
Duzib205G1912 Durio zibethinus HOM05D007467 ORTHO05D009441 8.9e-54 214.9 266 60.5
FAN04G1879 Fragaria x ananassa HOM05D007467 ORTHO05D009441 8.9e-54 214.9 243 64.6
FvH4_5g10770 Fragaria vesca HOM05D007467 ORTHO05D009441 1.2e-53 214.5 266 60.5
FAN18G0937 Fragaria x ananassa HOM05D007467 ORTHO05D009441 1.2e-53 214.5 266 60.5
QL02p027667 Quercus lobata HOM05D007467 ORTHO05D009441 1.2e-53 214.5 281 57.3
RcHm_v2.0_Chr7g0187371 Rosa chinensis HOM05D007467 ORTHO05D009441 1.5e-53 214.2 243 60.5
Oeu013372.1 Olea europaea HOM05D007467 ORTHO05D009441 2.0e-53 213.8 250 60.8
Gohir.D12G242100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 3.4e-53 213.0 240 55.0
FAN13G1608 Fragaria x ananassa HOM05D007467 ORTHO05D009441 5.8e-53 212.2 243 63.0
GSVIVG01019666001 Vitis vinifera HOM05D007467 ORTHO05D009441 5.8e-53 212.2 240 63.3
Gorai.008G259400 Gossypium raimondii HOM05D007467 ORTHO05D009441 9.9e-53 211.5 240 54.6
MD06G1120900 Malus domestica HOM05D007467 ORTHO05D009441 1.7e-52 210.7 289 52.2
Nitab4.5_0008141g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 3.8e-52 209.5 247 63.6
MD14G1137500 Malus domestica HOM05D007467 ORTHO05D009441 2.4e-51 206.8 289 45.7
CAN.G567.94 Capsicum annuum HOM05D007467 ORTHO05D009441 3.2e-51 206.5 245 60.8
FAN08G2920 Fragaria x ananassa HOM05D007467 ORTHO05D009441 7.1e-51 205.3 243 63.0
TWI60G0745 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 7.8e-50 201.8 321 51.1
Potri.001G082600 Populus trichocarpa HOM05D007467 ORTHO05D009441 1.0e-49 201.4 273 57.5
Nitab4.5_0002720g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 1.3e-49 201.1 247 61.9
Ciclev10020958m.g Citrus clementina HOM05D007467 ORTHO05D009441 3.9e-49 199.5 263 59.3
Gohir.A09G188250 Gossypium hirsutum HOM05D007467 ORTHO05D009441 3.9e-49 199.5 261 58.2
Atru.chr9.1852 Acer truncatum HOM05D007467 ORTHO05D009441 5.1e-49 199.1 252 61.1
DCAR_006558 Daucus carota HOM05D007467 ORTHO05D009441 1.1e-48 198.0 270 48.1
Oeu042839.1 Olea europaea HOM05D007467 ORTHO05D009441 1.5e-48 197.6 255 58.4
Manes.02G001700 Manihot esculenta HOM05D007467 ORTHO05D009441 3.3e-48 196.4 252 50.8
Sabra01G0059300 Salix brachista HOM05D007467 ORTHO05D009441 3.3e-48 196.4 271 56.8
Hma1.2p1_0456F.1_g156740 Hydrangea macrophylla HOM05D007467 ORTHO05D009441 4.3e-48 196.1 261 55.6
Nn1g00417 Nelumbo nucifera HOM05D007467 ORTHO05D009441 7.3e-48 195.3 255 49.8
Potri.003G147900 Populus trichocarpa HOM05D007467 ORTHO05D009441 1.2e-47 194.5 261 58.2
Gorai.006G205400 Gossypium raimondii HOM05D007467 ORTHO05D009441 1.6e-47 194.1 265 55.8
Gohir.D09G183100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 3.6e-47 193.0 250 57.6
CiPaw.11G111200 Carya illinoinensis HOM05D007467 ORTHO05D009441 4.7e-47 192.6 240 59.6
HanXRQChr07g0192371 Helianthus annuus HOM05D007467 ORTHO05D009441 6.2e-47 192.2 252 56.7
TAR636G1420 Trochodendron aralioides HOM05D007467 ORTHO05D009441 5.2e-46 189.1 254 49.2
TWI15G0957 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 6.9e-46 188.7 300 46.0
Cfa011912 Carpinus fangiana HOM05D007467 ORTHO05D009441 9.0e-46 188.3 269 54.6
PGSC0003DMG400012234 Solanum tuberosum HOM05D007467 ORTHO05D009441 9.0e-46 188.3 243 59.3
Aqoxy7G00009 Aquilegia oxysepala HOM05D007467 ORTHO05D009441 2.0e-45 187.2 244 59.4
Haze_09186 Corylus avellana HOM05D007467 ORTHO05D009441 5.8e-45 185.7 266 54.5
Lsat_1_v5_gn_6_10100 Lactuca sativa HOM05D007467 ORTHO05D009441 2.2e-44 183.7 247 48.2
Sabra03G0107500 Salix brachista HOM05D007467 ORTHO05D009441 2.2e-44 183.7 257 54.1
TAR629G1879 Trochodendron aralioides HOM05D007467 ORTHO05D009441 4.9e-44 182.6 243 58.4
Dinv18747 Davidia involucrata HOM05D007467 ORTHO05D009441 1.1e-43 181.4 233 62.2
ECA233G1457 Erigeron canadensis HOM05D007467 ORTHO05D009441 2.7e-42 176.8 246 57.3
MBI04_g43054_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 3.0e-41 173.3 235 46.4
MBI04_g15581_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 8.7e-41 171.8 235 46.0
Cc08_g16860 Coffea canephora HOM05D007467 ORTHO05D009441 1.9e-40 170.6 238 55.9
CANSAT21G0614 Cannabis sativa HOM05D007467 ORTHO05D009441 2.5e-40 170.2 265 54.3
PGR042G1595 Punica granatum HOM05D007467 ORTHO05D009441 6.2e-39 165.6 240 56.2
Eucgr.E01052 Eucalyptus grandis HOM05D007467 ORTHO05D009441 1.8e-38 164.1 310 48.7
Lj2P155T22 Lonicera japonica HOM05D007467 ORTHO05D009441 6.9e-38 162.2 247 52.6
Nn3g18852 Nelumbo nucifera HOM05D007467 ORTHO05D009441 9.9e-37 158.3 239 52.7
ClCG01G001480 Citrullus lanatus HOM05D007467 ORTHO05D009441 1.3e-36 157.9 251 51.8
Aa31LG2G1740 Aethionema arabicum HOM05D007467 ORTHO05D009441 3.8e-36 156.4 236 52.1
Sopen08g031410 Solanum pennellii HOM05D007467 ORTHO05D009441 9.3e-35 151.8 236 52.5
Solyc08g083220.1 Solanum lycopersicum HOM05D007467 ORTHO05D009441 3.5e-34 149.8 235 53.2
BcaC04g22507 Brassica carinata HOM05D007467 ORTHO05D009441 3.0e-33 146.7 236 46.6
MELO3C005789.2 Cucumis melo HOM05D007467 ORTHO05D009441 3.9e-33 146.4 248 49.6
CsaV3_5G001620 Cucumis sativus L. HOM05D007467 ORTHO05D009441 5.6e-32 142.5 260 48.8
MBI12_g21574_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 4.8e-31 139.4 232 50.4
CARHR046220 Cardamine hirsuta HOM05D007467 ORTHO05D009441 8.1e-31 138.7 243 39.5
Sed0003485 Sechium edule HOM05D007467 ORTHO05D009441 8.1e-31 138.7 255 50.6
THA.LOC104823626 Tarenaya hassleriana HOM05D007467 ORTHO05D009441 1.8e-30 137.5 238 47.1
Carub.0002s0004 Capsella rubella HOM05D007467 ORTHO05D009441 1.1e-27 128.3 243 48.1
A09p15270 Brassica napus HOM05D007467 ORTHO05D009441 1.4e-27 127.9 236 44.1
BraA09t37173Z Brassica rapa HOM05D007467 ORTHO05D009441 1.4e-27 127.9 236 44.1
C09p18550 Brassica napus HOM05D007467 ORTHO05D009441 7.1e-27 125.6 236 42.8
BolC9t54751H Brassica oleracea HOM05D007467 ORTHO05D009441 7.1e-27 125.6 236 42.8
Thhalv10023631m.g Eutrema salsugineum HOM05D007467 ORTHO05D009441 9.3e-27 125.2 237 38.4
Actinidia22211 Actinidia chinensis HOM05D007467 ORTHO05D009441 3.5e-26 123.2 101 64.4
Oeu022032.1 Olea europaea HOM05D007467 ORTHO05D009441 4.6e-26 122.9 160 50.6
Zm00001eb023700 Zea mays HOM05D007467 ORTHO05D009441 4.6e-26 122.9 243 43.6
SGA_v2.0_scaffold267G46175 Striga asiatica HOM05D007467 ORTHO05D009441 1.3e-25 121.3 224 48.2
Sp2g00870 Schrenkiella parvula HOM05D007467 ORTHO05D009441 2.3e-25 120.6 240 44.2
CDE02G3312 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 3.9e-25 119.8 229 40.2
PSO782G5165 Papaver somniferum HOM05D007467 ORTHO05D009441 5.1e-25 119.4 251 46.6
PSO478G5135 Papaver somniferum HOM05D007467 ORTHO05D009441 1.1e-24 118.2 251 41.8
BcaB07g31413 Brassica carinata HOM05D007467 ORTHO05D009441 1.9e-24 117.5 236 44.5
AUR62007067 Chenopodium quinoa HOM05D007467 ORTHO05D009441 2.6e-21 107.1 246 34.6
AUR62019932 Chenopodium quinoa HOM05D007467 ORTHO05D009441 5.8e-21 105.9 246 37.0
PGSC0003DMG400013732 Solanum tuberosum HOM05D007467 ORTHO05D009441 8.4e-20 102.1 141 47.5
AT1G64690 Arabidopsis thaliana HOM05D007467 ORTHO05D009441 1.4e-19 101.3 243 43.6
EL10Ac5g12411 Beta vulgaris HOM05D007467 ORTHO05D009441 6.0e-18 95.9 205 37.1
AL2G10070 Arabidopsis lyrata HOM05D007467 ORTHO05D009441 2.3e-17 94.0 243 40.7
Ah.12g053280 Amaranthus hybridus HOM05D007467 ORTHO05D009441 8.2e-15 85.5 190 37.9
Os10g0562600 Oryza sativa ssp. japonica HOM05D007467 ORTHO05D009441 2.4e-14 84.0 216 38.0
ATR0579G156 Amborella trichopoda HOM05D007467 ORTHO05D009441 2.5e-11 73.9 237 29.1
Sed0003279 Sechium edule HOM05D002166 ORTHO05D002634 4.2e-11 73.2 240 30.0
BcaB07g31547 Brassica carinata HOM05D007467 ORTHO05D009441 2.5e-08 63.9 120 35.8
ClCG00G001110 Citrullus lanatus HOM05D007467 ORTHO05D009441 3.3e-08 63.5 124 54.8
Sed0003496 Sechium edule HOM05D002166 ORTHO05D002634 3.3e-08 63.5 279 28.3
CDE11G0649 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 7.4e-08 62.4 171 31.6
GSVIVG01012735001 Vitis vinifera HOM05D002166 ORTHO05D002634 1.3e-07 61.6 254 26.0
Migut.M01315 Erythranthe guttata HOM05D002166 ORTHO05D002634 1.7e-07 61.2 237 28.7
TAR626G0812 Trochodendron aralioides HOM05D002166 ORTHO05D002634 1.7e-07 61.2 226 30.5
Dinv40752 Davidia involucrata HOM05D002166 ORTHO05D002634 2.2e-07 60.8 131 35.1
Zm00001eb070190 Zea mays HOM05D002166 ORTHO05D002634 3.7e-07 60.1 114 39.5
MELO3C007386.2 Cucumis melo HOM05D002166 ORTHO05D002634 4.8e-07 59.7 235 27.2
Lsat_1_v5_gn_5_4021 Lactuca sativa HOM05D002166 ORTHO05D002634 4.8e-07 59.7 131 42.7
SEGI_05627 Sequoiadendron giganteum HOM05D002166 ORTHO05D002634 6.3e-07 59.3 52 55.8
TAR629G0586 Trochodendron aralioides HOM05D002166 ORTHO05D002634 6.3e-07 59.3 179 31.8
arahy.Tifrunner.gnm1.ann1.2WUV3V Arachis hypogaea HOM05D002166 ORTHO05D002634 8.2e-07 58.9 170 42.9
arahy.Tifrunner.gnm1.ann1.MVDX5J Arachis hypogaea HOM05D002166 ORTHO05D002634 8.2e-07 58.9 170 42.9
CsaV3_6G049090 Cucumis sativus L. HOM05D002166 ORTHO05D002634 8.2e-07 58.9 231 26.8
Dinv22263 Davidia involucrata HOM05D002166 ORTHO05D002634 8.2e-07 58.9 129 48.8
SEGI_00451 Sequoiadendron giganteum HOM05D002319 ORTHO05D002374 8.2e-07 58.9 203 41.9
CSS0030432 Camellia sinensis var. sinensis HOM05D002166 ORTHO05D002634 1.1e-06 58.5 131 43.5
HanXRQChr08g0233861 Helianthus annuus HOM05D002166 ORTHO05D002634 1.1e-06 58.5 131 42.7
Potri.004G015800 Populus trichocarpa HOM05D002166 ORTHO05D002634 1.1e-06 58.5 154 34.4
ClCG01G022030 Citrullus lanatus HOM05D002166 ORTHO05D002634 1.4e-06 58.2 315 27.0
HanXRQChr05g0159381 Helianthus annuus HOM05D002166 ORTHO05D002634 1.4e-06 58.2 131 40.5
Actinidia35343 Actinidia chinensis HOM05D002166 ORTHO05D002634 1.8e-06 57.8 126 43.7
Aa31LG8G7170 Aethionema arabicum HOM05D002166 ORTHO05D002634 2.4e-06 57.4 204 37.3
Migut.H01828 Erythranthe guttata HOM05D002166 ORTHO05D002634 2.4e-06 57.4 129 49.6
Hma1.2p1_0673F.1_g201340 Hydrangea macrophylla HOM05D002166 ORTHO05D002634 2.4e-06 57.4 131 48.1
PSO541G1388 Papaver somniferum HOM05D002166 ORTHO05D002634 2.4e-06 57.4 131 52.7
PGR083G0038 Punica granatum HOM05D002166 ORTHO05D002634 2.4e-06 57.4 129 51.9
ECA246G2514 Erigeron canadensis HOM05D002166 ORTHO05D002634 3.1e-06 57.0 131 48.9
MSTRG.15149 Avicennia marina HOM05D002166 ORTHO05D002634 4.1e-06 56.6 245 28.6
CDE02G2372 Ceratophyllum demersum HOM05D002166 ORTHO05D002634 4.1e-06 56.6 164 38.4
Lj6g0008473 Lotus japonicus HOM05D002166 ORTHO05D002634 4.1e-06 56.6 131 48.1
PSO675G8999 Papaver somniferum HOM05D002166 ORTHO05D002634 4.1e-06 56.6 131 52.7
Glyma.02G290700 Glycine max HOM05D002166 ORTHO05D002634 5.3e-06 56.2 171 32.2
Os04g0625000 Oryza sativa ssp. japonica HOM05D002166 ORTHO05D002634 5.3e-06 56.2 114 37.7
PSO210G4122 Papaver somniferum HOM05D002166 ORTHO05D002634 5.3e-06 56.2 129 50.4
PSO832G4614 Papaver somniferum HOM05D002166 ORTHO05D002634 5.3e-06 56.2 129 51.9
Pp3c18_10070 Physcomitrium patens HOM05D002166 ORTHO05D002634 5.3e-06 56.2 130 51.5
Pp3c9_16460 Physcomitrium patens HOM05D002319 ORTHO05D002374 5.3e-06 56.2 112 38.4
PGSC0003DMG400027878 Solanum tuberosum HOM05D002166 ORTHO05D002634 5.3e-06 56.2 131 35.1
Zm00001eb431290 Zea mays HOM05D002166 ORTHO05D002634 5.3e-06 56.2 115 37.4
CAN.G1404.1 Capsicum annuum HOM05D002166 ORTHO05D002634 6.9e-06 55.8 131 34.4
MELO3C025366.2 Cucumis melo HOM05D002166 ORTHO05D002634 6.9e-06 55.8 170 37.1
Glyma.14G024000 Glycine max HOM05D002166 ORTHO05D002634 6.9e-06 55.8 170 40.0
MBI02_g07160_MAGBIO Magnolia biondii HOM05D002166 ORTHO05D002634 6.9e-06 55.8 131 49.6
Potri.011G090100 Populus trichocarpa HOM05D002166 ORTHO05D002634 6.9e-06 55.8 127 33.1
Sabra04G0008000 Salix brachista HOM05D002166 ORTHO05D002634 6.9e-06 55.8 92 44.6
Sp3g18380 Schrenkiella parvula HOM05D002166 ORTHO05D002634 6.9e-06 55.8 147 34.0
AL3G34070 Arabidopsis lyrata HOM05D002166 ORTHO05D002634 9.1e-06 55.5 131 41.2
BraA06t23502Z Brassica rapa HOM05D002166 ORTHO05D002634 9.1e-06 55.5 183 33.9
Haze_09688 Corylus avellana HOM05D002166 ORTHO05D002634 9.1e-06 55.5 131 46.6
Solyc07g064580.3 Solanum lycopersicum HOM05D002166 ORTHO05D002634 9.1e-06 55.5 170 37.6
Sopen07g032770 Solanum pennellii HOM05D002166 ORTHO05D002634 9.1e-06 55.5 170 37.6
Zm00001eb298080 Zea mays HOM05D002166 ORTHO05D002634 9.1e-06 55.5 136 35.3


User provided reference genes

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