Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 0.0e+00 1087.0 587 100.0
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 1.6e-205 719.9 593 70.0
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.8e-170 602.8 497 67.0
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 5.4e-166 588.6 649 55.2
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 7.1e-166 588.2 594 60.3
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 7.1e-166 588.2 483 68.7
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 1.2e-165 587.4 494 67.4
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 2.7e-165 586.3 483 68.3
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 3.5e-165 585.9 573 60.7
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 7.8e-165 584.7 497 66.2
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 2.3e-164 583.2 475 68.4
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 2.3e-164 583.2 479 67.8
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 3.9e-164 582.4 590 59.8
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 8.6e-164 581.3 483 68.3
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 1.1e-163 580.9 488 67.6
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 4.3e-163 578.9 607 59.6
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 5.6e-163 578.6 487 67.6
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 2.8e-162 576.2 479 67.6
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 6.2e-162 575.1 483 67.1
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 2.3e-161 573.2 468 68.6
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 3.1e-161 572.8 484 67.1
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 1.5e-160 570.5 495 65.1
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 2.6e-160 569.7 584 57.9
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 2.9e-159 566.2 589 61.0
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 4.9e-159 565.5 485 66.8
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 4.9e-159 565.5 467 69.4
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.6e-157 560.5 594 58.2
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 6.0e-157 558.5 354 82.8
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 3.9e-156 555.8 496 65.1
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 4.3e-155 552.4 447 69.4
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 2.8e-154 549.7 474 65.0
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 3.6e-154 549.3 589 56.9
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 1.1e-153 547.7 528 62.9
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 8.9e-153 544.7 511 63.2
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 3.4e-152 542.7 495 63.2
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 1.7e-151 540.4 492 63.2
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 6.4e-151 538.5 482 63.9
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 2.4e-150 536.6 477 65.0
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 1.2e-149 534.3 563 57.4
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 3.5e-149 532.7 486 64.0
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 4.6e-149 532.3 487 63.2
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 6.0e-149 531.9 506 60.9
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 6.0e-149 531.9 544 57.9
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 7.8e-149 531.6 479 64.1
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 1.0e-148 531.2 489 62.2
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 5.1e-148 528.9 587 56.6
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 1.1e-147 527.7 483 63.6
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 2.5e-147 526.6 494 62.3
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 3.3e-147 526.2 592 55.6
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 9.6e-147 524.6 478 63.4
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 1.3e-146 524.2 420 68.6
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 1.6e-146 523.9 488 62.5
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 2.8e-146 523.1 595 56.1
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 3.6e-146 522.7 595 56.1
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 4.8e-146 522.3 587 56.2
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 3.1e-145 519.6 478 62.8
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 4.0e-145 519.2 441 66.4
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 5.3e-145 518.8 601 54.9
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.2e-144 517.7 588 56.0
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.0e-144 516.9 490 62.4
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 3.4e-144 516.2 479 63.9
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 4.4e-144 515.8 491 62.3
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 7.6e-144 515.0 568 56.3
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 9.9e-144 514.6 602 54.2
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 9.9e-144 514.6 486 62.3
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 1.3e-143 514.2 500 61.4
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.7e-143 513.8 493 62.9
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.2e-143 513.5 491 61.5
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 3.8e-143 512.7 491 62.1
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 7.1e-142 508.4 479 62.4
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 2.7e-141 506.5 532 58.8
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.3e-139 499.2 479 62.6
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.3e-139 499.2 479 62.4
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 4.3e-139 499.2 513 59.5
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 3.6e-138 496.1 487 60.2
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 3.6e-138 496.1 436 65.4
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 2.4e-137 493.4 575 55.3
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 3.1e-137 493.0 568 54.8
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 2.0e-136 490.3 579 55.6
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 2.6e-136 490.0 588 52.4
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 2.2e-135 486.9 495 59.2
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 2.9e-135 486.5 491 59.7
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.9e-135 486.5 479 60.3
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 8.4e-135 485.0 578 54.3
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 1.4e-134 484.2 491 59.1
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 1.4e-134 484.2 491 59.1
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 2.4e-134 483.4 594 52.5
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 5.5e-134 482.3 477 60.0
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 1.2e-133 481.1 486 59.1
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-133 481.1 479 59.7
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 4.6e-133 479.2 489 58.3
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 4.6e-133 479.2 489 58.3
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 1.3e-132 477.6 477 59.5
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 1.6e-130 470.7 585 53.0
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 6.2e-130 468.8 585 52.5
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.8e-129 467.2 477 58.5
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 6.9e-129 465.3 486 56.8
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.0e-129 464.9 488 57.8
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.5e-128 462.6 477 58.7
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 5.8e-128 462.2 555 52.1
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 2.9e-127 459.9 497 57.3
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 5.5e-126 455.7 505 55.8
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 2.7e-125 453.4 635 48.7
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 3.5e-125 453.0 556 52.3
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 6.7e-124 448.7 494 55.7
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.5e-123 447.6 495 60.6
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 1.5e-123 447.6 618 49.2
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.4e-121 441.0 455 57.8
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 3.4e-120 436.4 462 59.1
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 2.9e-119 433.3 464 56.2
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 6.1e-117 425.6 477 56.0
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 6.1e-117 425.6 480 53.1
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 7.9e-117 425.2 505 53.9
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 1.1e-115 421.4 545 51.2
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.6e-114 417.5 459 55.3
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 5.0e-111 406.0 578 49.3
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 1.2e-109 401.4 328 63.7
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 4.1e-105 386.3 438 53.9
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 7.9e-101 372.1 563 43.2
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 1.4e-100 371.3 485 51.8
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.8e-100 370.9 368 61.1
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 9.7e-99 365.2 600 43.0
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 5.0e-95 352.8 281 64.8
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 2.5e-94 350.5 431 48.5
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.5e-91 341.3 411 54.0
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 7.7e-88 328.9 316 60.8
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.6e-80 304.7 437 43.9
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 5.0e-79 299.7 374 44.1
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 4.7e-77 293.1 266 62.4
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 2.6e-75 287.3 326 58.0
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 4.0e-68 263.5 542 35.1
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 5.8e-51 206.5 131 79.4
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 8.3e-50 202.6 152 66.4
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-45 188.7 141 65.2
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.2e-45 186.4 141 64.5
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 8.1e-45 186.0 141 64.5
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 7.6e-43 179.5 181 56.4
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.7e-39 168.3 168 54.2
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.5e-38 165.2 134 60.4
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.9e-38 164.9 134 59.7
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 2.5e-38 164.5 447 29.8
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 7.1e-33 146.4 95 80.0
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-32 145.6 128 58.6
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.5e-32 144.1 171 48.0
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 9.9e-27 125.9 72 80.6
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.7e-26 125.2 73 78.1
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 6.0e-24 116.7 69 84.1
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 8.7e-23 112.8 93 65.6
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 5.3e-20 103.6 123 49.6
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 9.9e-19 99.4 353 26.9
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 4.6e-16 90.5 71 73.2
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 3.9e-15 87.4 52 86.5
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 3.7e-13 80.9 53 69.8
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 6.2e-13 80.1 95 49.5
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 5.8e-11 73.6 124 40.3
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 3.5e-08 64.3 57 63.2


User provided reference genes

Program Settings