Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 0.0e+00 2151.3 1056 100.0
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 2.0e-155 554.3 380 76.1
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 5.0e-154 549.7 380 75.0
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 4.4e-150 536.6 600 53.5
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 9.5e-145 518.8 380 70.5
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 4.1e-140 503.4 570 52.3
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 5.0e-138 496.5 380 67.9
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 8.6e-138 495.7 380 68.2
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 3.3e-137 493.8 576 51.6
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 1.2e-136 491.9 380 67.1
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 1.6e-136 491.5 570 50.0
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 1.6e-136 491.5 380 68.2
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 4.7e-136 490.0 570 50.4
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 4.7e-136 490.0 380 66.6
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 6.1e-136 489.6 381 66.4
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 6.1e-136 489.6 380 66.3
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 5.2e-135 486.5 570 50.5
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 1.5e-134 485.0 381 68.0
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 2.6e-134 484.2 381 68.5
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 3.4e-134 483.8 381 67.2
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 4.4e-134 483.4 381 67.2
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 7.5e-134 482.6 381 66.9
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 9.8e-134 482.3 381 67.7
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 9.8e-134 482.3 572 50.5
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 3.7e-133 480.3 383 65.3
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 3.7e-133 480.3 381 65.4
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 3.7e-133 480.3 381 65.6
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 6.4e-133 479.6 381 66.7
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 1.1e-132 478.8 557 50.3
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 1.8e-132 478.0 381 65.9
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 4.1e-132 476.9 380 65.3
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 1.0e-130 472.2 570 48.9
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 1.3e-130 471.9 377 65.8
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 8.6e-130 469.2 380 63.4
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 8.6e-130 469.2 380 63.4
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 8.6e-130 469.2 569 49.9
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 1.1e-129 468.8 384 63.8
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 9.5e-129 465.7 377 64.7
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 1.6e-128 464.9 381 64.0
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.6e-128 464.9 380 62.9
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 3.6e-128 463.8 380 62.9
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 4.7e-128 463.4 377 63.9
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 6.2e-128 463.0 386 62.7
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 8.0e-128 462.6 387 62.0
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 8.0e-128 462.6 383 63.2
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 2.3e-127 461.1 385 62.1
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 6.8e-127 459.5 380 63.2
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 8.9e-127 459.1 563 49.4
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 1.2e-126 458.8 569 48.5
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 1.5e-126 458.4 380 62.4
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 7.5e-126 456.1 379 62.0
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 9.8e-126 455.7 380 61.8
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 1.7e-125 454.9 379 62.0
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 2.9e-125 454.1 377 63.7
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 2.9e-125 454.1 550 48.7
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 4.9e-125 453.4 383 64.0
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 8.3e-125 452.6 383 63.4
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 1.1e-124 452.2 383 63.4
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 1.1e-124 452.2 379 61.2
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 3.2e-124 450.7 368 63.3
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 2.7e-123 447.6 339 67.0
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 3.5e-123 447.2 381 61.7
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 4.6e-123 446.8 383 61.9
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 3.0e-122 444.1 339 67.0
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 3.0e-122 444.1 573 46.1
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 8.6e-122 442.6 382 61.5
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 4.7e-120 436.8 371 62.3
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 8.1e-120 436.0 581 46.0
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 1.4e-119 435.3 381 59.3
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 2.3e-119 434.5 626 44.2
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 6.8e-119 433.0 382 60.2
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 2.6e-118 431.0 381 61.4
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 8.3e-117 426.0 570 45.6
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 1.0e-114 419.1 382 58.9
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 3.0e-114 417.5 370 58.9
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 2.5e-113 414.5 371 59.0
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 4.3e-113 413.7 370 58.4
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 3.6e-112 410.6 385 57.1
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 8.1e-112 409.5 379 57.5
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 4.0e-111 407.1 379 57.3
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 1.2e-110 405.6 386 54.9
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 2.6e-110 404.4 380 57.1
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 3.4e-110 404.1 377 57.3
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 9.9e-110 402.5 377 56.8
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 9.9e-110 402.5 377 57.0
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 9.9e-110 402.5 377 57.0
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 9.9e-110 402.5 377 57.0
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 1.3e-109 402.1 377 57.0
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 2.1e-107 394.8 391 54.7
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 4.6e-107 393.7 391 55.0
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 7.3e-105 386.3 380 54.2
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 2.0e-102 378.3 254 74.8
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 3.8e-101 374.0 319 62.4
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 3.6e-96 357.5 251 72.5
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 2.5e-89 334.7 264 65.9
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 4.3e-81 307.4 395 46.8
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.2e-75 289.3 188 77.7
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 5.1e-74 283.9 570 35.6
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 2.5e-65 255.0 222 63.5
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 1.3e-64 252.7 206 64.1
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 2.2e-64 251.9 392 38.3
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 3.4e-62 244.6 347 38.6
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 2.8e-56 224.9 212 59.0
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 5.7e-49 200.7 276 37.3
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 3.1e-47 194.9 310 35.5
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 1.6e-46 192.6 396 35.1
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 6.7e-42 177.2 200 52.5
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 2.6e-41 175.3 239 40.6
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 1.3e-40 172.9 292 39.4
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 8.2e-40 170.2 304 31.6
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 1.5e-36 159.5 347 34.3
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 2.8e-32 145.2 316 33.2
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 3.7e-32 144.8 303 35.3
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 2.4e-31 142.1 227 36.6
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 1.1e-28 133.3 334 33.2
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 2.5e-28 132.1 83 72.3
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 5.5e-28 131.0 130 51.5
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 3.0e-26 125.2 132 50.8
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 2.8e-24 118.6 95 62.1
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 7.8e-22 110.5 357 29.7
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 1.6e-19 102.8 155 43.2
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 6.4e-16 90.9 140 43.6
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 4.6e-14 84.7 106 46.2
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 8.6e-13 80.5 94 46.8
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 1.1e-12 80.1 188 29.3
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 9.5e-12 77.0 56 60.7
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 1.1e-10 73.6 87 46.0
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.2e-06 60.1 71 49.3


User provided reference genes

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