Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 4.2e-113 411.4 211 100.0
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.1e-67 259.6 214 67.8
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.3e-66 256.9 227 63.4
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 2.5e-65 252.7 225 63.1
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 3.1e-63 245.7 229 59.8
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 4.0e-63 245.4 170 72.4
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 5.3e-63 245.0 208 63.9
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 2.2e-61 239.6 217 63.1
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 2.2e-61 239.6 222 60.4
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 2.9e-61 239.2 187 67.4
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 3.8e-61 238.8 199 65.3
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 6.4e-61 238.0 222 63.1
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 6.4e-61 238.0 226 60.2
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 8.4e-61 237.7 223 61.0
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 8.4e-61 237.7 222 59.9
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 1.1e-60 237.3 203 63.1
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.1e-60 237.3 163 74.8
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.9e-60 236.5 213 62.4
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 1.9e-60 236.5 217 60.8
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.9e-60 236.5 211 63.5
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.4e-60 236.1 213 62.4
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 3.2e-60 235.7 214 60.7
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 4.2e-60 235.3 228 58.3
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 4.2e-60 235.3 220 60.9
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.4e-60 235.0 213 62.0
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 9.3e-60 234.2 225 59.1
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 9.3e-60 234.2 220 60.9
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 4.6e-59 231.9 221 59.7
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 4.6e-59 231.9 219 60.7
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 1.0e-58 230.7 220 59.1
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 1.3e-58 230.3 199 63.3
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 1.3e-58 230.3 213 61.0
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 1.8e-58 229.9 163 71.2
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 5.1e-58 228.4 217 59.4
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 5.1e-58 228.4 163 70.6
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 6.7e-58 228.0 214 58.9
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 8.7e-58 227.6 161 70.8
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 8.7e-58 227.6 161 70.8
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 8.7e-58 227.6 161 70.8
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 8.7e-58 227.6 161 70.8
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 8.7e-58 227.6 161 70.8
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 8.7e-58 227.6 161 70.8
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 8.7e-58 227.6 161 70.8
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.1e-57 227.3 163 70.6
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 1.1e-57 227.3 214 58.4
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.1e-57 227.3 201 63.2
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.5e-57 226.9 161 70.8
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 1.5e-57 226.9 161 70.8
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.5e-57 226.9 161 70.8
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 1.5e-57 226.9 163 69.9
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 1.5e-57 226.9 164 69.5
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.9e-57 226.5 200 60.5
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 2.5e-57 226.1 201 62.7
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 2.5e-57 226.1 201 62.7
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 3.3e-57 225.7 211 58.8
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 4.3e-57 225.3 226 56.6
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 4.3e-57 225.3 209 61.2
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 4.3e-57 225.3 183 65.0
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 5.6e-57 224.9 213 57.7
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 7.4e-57 224.6 201 61.7
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 7.4e-57 224.6 216 61.6
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 7.4e-57 224.6 162 70.4
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 7.4e-57 224.6 214 58.9
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 7.4e-57 224.6 222 59.0
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 7.4e-57 224.6 225 60.0
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 9.6e-57 224.2 216 60.2
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 9.6e-57 224.2 163 69.3
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 9.6e-57 224.2 223 57.8
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 9.6e-57 224.2 213 58.7
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 2.1e-56 223.0 222 59.0
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 2.8e-56 222.6 227 56.8
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 3.7e-56 222.2 192 62.5
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 3.7e-56 222.2 219 57.5
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 4.8e-56 221.9 219 59.4
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.2e-56 221.5 204 58.3
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 8.1e-56 221.1 217 59.9
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 1.1e-55 220.7 218 58.7
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 1.4e-55 220.3 213 61.0
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 1.8e-55 219.9 210 60.0
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 2.4e-55 219.5 162 69.8
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.4e-55 219.5 212 60.8
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 3.1e-55 219.2 221 56.6
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 3.1e-55 219.2 212 59.0
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 3.1e-55 219.2 163 66.3
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 4.0e-55 218.8 210 59.5
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 5.3e-55 218.4 194 62.4
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.3e-55 218.4 236 56.4
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.9e-55 218.0 170 66.5
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.5e-54 216.9 182 62.6
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.5e-54 216.9 170 65.9
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.5e-54 216.9 182 62.6
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.5e-54 216.9 182 62.6
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 3.4e-54 215.7 218 56.4
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 3.4e-54 215.7 213 56.3
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.5e-54 215.3 169 65.7
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 7.6e-54 214.5 163 66.3
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 7.6e-54 214.5 227 53.7
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.0e-53 214.2 224 57.6
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.7e-53 213.4 206 58.7
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.2e-53 213.0 163 65.0
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 4.9e-53 211.8 207 58.0
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 6.5e-53 211.5 225 55.6
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.1e-52 210.7 216 58.3
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 1.6e-51 206.8 119 84.0
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 2.7e-51 206.1 149 69.1
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 4.6e-51 205.3 279 46.6
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 6.0e-51 204.9 215 56.3
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 3.0e-50 202.6 166 64.5
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 1.5e-49 200.3 221 53.8
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.3e-48 197.2 118 78.0
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.6e-48 196.8 213 54.0
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 3.7e-48 195.7 201 54.7
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.8e-47 193.4 117 76.1
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 4.5e-46 188.7 224 50.4
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 5.8e-46 188.3 212 53.3
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 7.6e-46 188.0 158 63.9
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.3e-45 187.2 158 61.4
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 2.7e-43 179.5 189 55.0
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 1.3e-42 177.2 118 72.0
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 2.3e-42 176.4 215 51.6
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 3.0e-42 176.0 102 84.3
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 5.1e-42 175.3 118 71.2
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.1e-41 174.1 218 46.8
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.1e-41 174.1 218 46.8
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 7.4e-41 171.4 208 51.0
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 5.3e-39 165.2 170 59.4
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 5.5e-36 155.2 120 56.7
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 4.6e-35 152.1 120 59.2
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 3.9e-34 149.1 118 57.6
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 5.1e-34 148.7 93 75.3
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 6.7e-34 148.3 118 56.8
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 1.8e-31 140.2 106 56.6
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 4.1e-31 139.0 224 45.1
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 1.2e-30 137.5 112 56.2
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.5e-30 137.1 81 81.5
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 1.4e-28 130.6 81 79.0
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.1e-27 126.7 80 77.5
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 2.7e-27 126.3 194 43.3
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.3e-23 112.1 67 77.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.3e-23 112.1 67 77.6
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 5.2e-18 95.5 133 46.6
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 1.6e-14 84.0 55 72.7
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 9.4e-12 74.7 50 70.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 9.4e-12 74.7 176 33.5
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 2.7e-11 73.2 145 39.3
Cre12.g520600 Chlamydomonas reinhardtii HOM05D005092 ORTHO05D006073 5.9e-06 55.5 113 29.2


User provided reference genes

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