Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 1.6e-101 372.9 203 100.0
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 5.2e-76 288.1 243 71.2
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 2.8e-69 265.8 197 75.6
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 2.7e-64 249.2 195 73.3
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 6.0e-64 248.1 190 76.8
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 4.4e-59 231.9 198 70.7
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.3e-58 230.3 201 68.2
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 6.4e-58 228.0 208 64.4
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 9.3e-57 224.2 198 67.7
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.2e-56 223.8 207 63.3
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.6e-56 223.4 198 69.7
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 2.1e-56 223.0 208 63.0
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.7e-56 222.6 209 62.7
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 2.3e-55 219.5 198 68.2
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 5.1e-55 218.4 204 64.7
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 8.7e-55 217.6 218 62.8
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 7.3e-54 214.5 206 61.7
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 9.6e-54 214.2 205 63.4
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 9.6e-54 214.2 202 67.3
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 2.1e-53 213.0 201 67.2
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 2.8e-53 212.6 207 63.3
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.4e-52 210.3 227 59.9
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 5.3e-52 208.4 205 62.0
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 5.3e-52 208.4 205 63.4
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 6.9e-52 208.0 246 54.5
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 1.2e-51 207.2 205 62.0
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 2.6e-51 206.1 225 59.6
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 2.2e-50 203.0 205 62.4
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 1.4e-49 200.3 205 59.5
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 3.2e-49 199.1 205 63.4
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.7e-48 196.1 211 56.9
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.7e-48 196.1 211 56.9
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 3.5e-48 195.7 205 60.5
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 7.9e-48 194.5 205 60.0
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 1.0e-47 194.1 208 61.5
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 1.0e-47 194.1 203 61.1
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.3e-47 193.7 205 59.0
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 1.7e-47 193.4 205 61.0
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 3.0e-47 192.6 213 56.8
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 3.0e-47 192.6 210 62.4
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 3.0e-47 192.6 208 58.2
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 3.9e-47 192.2 201 56.7
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 6.6e-47 191.4 199 62.8
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 2.5e-46 189.5 183 65.6
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 5.6e-46 188.3 206 61.7
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.6e-45 186.8 202 61.9
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.6e-45 186.8 208 60.6
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.1e-44 184.1 184 63.6
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 1.8e-44 183.3 208 59.6
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 6.9e-44 181.4 231 55.0
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 6.9e-44 181.4 206 59.2
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 2.6e-43 179.5 202 55.4
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 4.5e-43 178.7 214 55.6
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.7e-42 176.8 203 57.6
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 6.4e-42 174.9 299 45.8
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 3.2e-41 172.6 188 59.0
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 3.2e-41 172.6 188 59.0
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 4.2e-41 172.2 264 47.7
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 4.2e-41 172.2 264 47.7
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.2e-40 170.6 202 56.4
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.2e-40 170.6 208 57.2
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.2e-40 170.6 208 57.2
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 1.6e-40 170.2 190 57.9
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 1.6e-40 170.2 203 53.7
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.1e-40 169.9 122 77.0
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.1e-40 169.9 122 77.0
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 6.0e-40 168.3 209 53.6
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 7.9e-40 167.9 206 54.9
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 7.9e-40 167.9 195 56.4
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 1.0e-39 167.5 192 60.4
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 2.5e-38 162.9 203 52.7
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 5.6e-38 161.8 122 73.8
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 5.6e-38 161.8 122 74.6
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 1.3e-37 160.6 206 52.4
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 2.1e-37 159.8 122 73.8
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 2.1e-37 159.8 203 51.2
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 4.8e-37 158.7 192 55.7
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 6.2e-37 158.3 204 50.0
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 8.1e-37 157.9 192 54.2
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 8.1e-37 157.9 129 70.5
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 2.4e-36 156.4 202 52.0
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 4.0e-36 155.6 258 46.1
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 4.0e-36 155.6 159 60.4
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 5.3e-36 155.2 122 72.1
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 1.2e-35 154.1 200 54.0
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 1.7e-34 150.2 204 51.5
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.9e-33 146.7 208 50.5
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 2.5e-33 146.4 121 70.2
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 3.2e-33 146.0 213 47.9
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 4.2e-33 145.6 215 47.9
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 5.5e-33 145.2 208 54.8
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 1.2e-32 144.1 229 48.5
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 1.6e-32 143.7 211 50.2
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 3.5e-32 142.5 220 49.1
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 1.8e-31 140.2 131 60.3
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 3.0e-31 139.4 206 47.6
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.1e-30 137.5 210 47.1
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.1e-30 137.5 221 44.8
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 1.5e-30 137.1 210 48.1
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.5e-30 137.1 213 49.3
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 2.5e-30 136.3 207 53.1
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 9.6e-30 134.4 150 54.7
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.3e-29 134.0 153 54.9
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 1.6e-29 133.7 122 63.9
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 2.1e-29 133.3 123 64.2
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 4.8e-29 132.1 212 47.2
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 5.3e-28 128.6 313 38.3
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.5e-27 127.1 206 48.1
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 4.6e-24 115.5 241 43.2
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 4.6e-24 115.5 105 66.7
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 1.3e-23 114.0 123 54.5
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 1.8e-23 113.6 129 54.3
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 5.1e-23 112.1 293 35.8
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 4.3e-22 109.0 180 47.2
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 2.2e-21 106.7 199 45.2
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 4.8e-21 105.5 113 57.5
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 8.2e-21 104.8 202 42.1
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 1.4e-20 104.0 138 51.4
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 1.8e-20 103.6 123 54.5
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 6.9e-20 101.7 174 42.0
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 6.9e-20 101.7 166 46.4
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 3.4e-19 99.4 116 50.9
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 4.5e-19 99.0 204 40.7
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 7.7e-19 98.2 80 75.0
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 7.7e-19 98.2 80 75.0
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 2.2e-18 96.7 203 39.9
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 3.8e-18 95.9 177 43.5
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 1.9e-17 93.6 207 38.2
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 7.9e-16 88.2 111 50.5
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 7.9e-16 88.2 111 50.5
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 7.9e-16 88.2 111 50.5
Actinidia04197 Actinidia chinensis HOM05D000749 ORTHO05D004893 1.5e-14 84.0 71 69.0
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 1.5e-14 84.0 127 42.5
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 5.7e-14 82.0 127 41.7
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 1.3e-13 80.9 72 63.9
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 1.3e-13 80.9 127 41.7
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 1.3e-13 80.9 124 41.1
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 4.8e-13 79.0 131 45.0
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 8.2e-13 78.2 58 75.9
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 3.1e-12 76.3 76 65.8
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 5.3e-12 75.5 282 34.4
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 2.6e-11 73.2 142 38.0
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.0e-10 71.2 74 56.8
Lalb_Chr05g0211571 Lupinus albus HOM05D005115 ORTHO05D005703 1.4e-09 67.4 79 51.9
MD06G1108300 Malus domestica HOM05D005115 ORTHO05D005703 4.2e-09 65.9 59 69.5
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 1.6e-08 63.9 69 53.6
QL02p030259 Quercus lobata HOM05D005115 ORTHO05D005703 2.7e-08 63.2 82 53.7
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 1.4e-07 60.8 73 52.1
AagrBONN_evm.TU.Sc2ySwM_344.5012 Anthoceros agrestis HOM05D028980 ORTHO05D026613 8.8e-07 58.2 97 47.4
Lsat_1_v5_gn_5_53240 Lactuca sativa HOM05D004014 ORTHO05D018183 4.4e-06 55.8 69 53.6


User provided reference genes

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