Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 3.3e-144 515.0 253 100.0
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 6.4e-116 421.0 250 84.4
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 8.4e-100 367.5 249 73.1
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 1.9e-99 366.3 235 75.7
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 7.1e-99 364.4 249 72.7
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 5.7e-96 354.8 249 70.7
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 5.7e-96 354.8 250 70.8
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 3.8e-92 342.0 250 70.0
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.5e-88 330.1 242 68.2
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.6e-87 326.6 230 70.9
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 1.4e-86 323.6 244 65.2
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 6.9e-86 321.2 238 67.6
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 9.1e-86 320.9 250 63.6
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 9.1e-86 320.9 243 66.7
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 2.6e-85 319.3 247 66.8
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 3.4e-85 318.9 251 63.7
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 7.7e-85 317.8 240 65.4
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 7.7e-85 317.8 262 61.8
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 5.0e-84 315.1 250 62.4
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 5.0e-84 315.1 251 64.9
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 7.2e-83 311.2 246 63.4
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 1.6e-82 310.1 237 65.4
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 4.6e-82 308.5 241 66.0
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.8e-81 306.6 245 63.7
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.3e-81 306.2 244 60.2
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 3.0e-81 305.8 223 68.6
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 3.9e-81 305.4 242 64.9
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 5.1e-81 305.1 250 62.8
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 6.7e-81 304.7 248 62.5
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.1e-80 303.9 243 63.4
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 3.3e-80 302.4 252 59.5
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 3.3e-80 302.4 240 61.7
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 5.7e-80 301.6 237 65.0
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 5.7e-80 301.6 242 64.0
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 7.4e-80 301.2 250 61.6
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.3e-79 300.4 244 61.9
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.7e-79 300.1 237 63.7
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 2.2e-79 299.7 252 60.3
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.1e-78 297.4 241 64.7
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 1.8e-78 296.6 224 67.4
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 1.8e-78 296.6 239 61.1
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 1.8e-78 296.6 242 63.2
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 3.1e-78 295.8 237 63.3
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 3.1e-78 295.8 237 60.8
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 4.1e-78 295.4 251 59.8
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.9e-78 294.7 241 64.3
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 1.2e-77 293.9 194 75.3
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 1.2e-77 293.9 237 61.6
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 2.6e-77 292.7 251 61.4
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 2.6e-77 292.7 251 61.4
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.6e-77 292.7 239 62.3
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 3.4e-77 292.4 241 63.1
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 4.5e-77 292.0 239 61.9
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.5e-77 292.0 239 61.9
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 4.5e-77 292.0 238 63.0
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 4.5e-77 292.0 238 62.2
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 1.0e-76 290.8 258 58.1
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 1.3e-76 290.4 237 61.6
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 2.2e-76 289.7 253 59.7
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 6.5e-76 288.1 243 60.9
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 8.5e-76 287.7 197 69.5
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 3.2e-75 285.8 237 62.9
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 5.5e-75 285.0 245 61.2
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 2.7e-74 282.7 251 57.0
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 2.7e-74 282.7 258 57.4
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 3.6e-74 282.3 243 60.9
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 4.7e-74 282.0 237 61.6
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 4.7e-74 282.0 253 59.3
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 6.1e-74 281.6 237 60.3
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 7.9e-74 281.2 275 56.0
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 1.0e-73 280.8 246 58.1
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 1.4e-73 280.4 237 61.6
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 1.4e-73 280.4 253 59.7
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 1.4e-73 280.4 243 58.8
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 1.8e-73 280.0 261 57.9
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 1.8e-73 280.0 261 57.9
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 1.8e-73 280.0 237 59.9
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 2.3e-73 279.6 238 61.8
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 6.7e-73 278.1 241 59.3
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 8.8e-73 277.7 236 60.6
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 2.0e-72 276.6 243 60.9
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 3.3e-72 275.8 238 60.1
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 7.4e-72 274.6 262 56.9
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 1.3e-71 273.9 251 58.2
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 1.7e-71 273.5 183 72.1
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 4.8e-71 271.9 242 59.9
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 1.1e-70 270.8 261 57.5
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 1.1e-70 270.8 236 58.5
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 1.4e-70 270.4 239 62.8
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.8e-70 270.0 224 62.5
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.2e-69 267.3 279 54.5
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 2.0e-69 266.5 253 57.3
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 2.0e-69 266.5 243 59.3
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 2.0e-69 266.5 243 59.3
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.0e-69 266.5 183 71.0
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 2.6e-69 266.2 185 69.2
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 1.7e-68 263.5 180 72.2
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 2.9e-68 262.7 239 56.9
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.8e-68 262.3 195 67.7
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 8.5e-68 261.2 183 69.9
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.5e-67 260.4 270 52.6
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 1.5e-67 260.4 237 57.4
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 3.2e-67 259.2 240 57.9
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 7.2e-67 258.1 180 70.0
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 1.6e-66 256.9 180 70.0
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 1.6e-66 256.9 197 64.5
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.1e-66 256.5 242 57.0
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 2.7e-66 256.1 257 54.1
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.7e-66 255.4 183 67.8
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.0e-65 254.2 183 67.8
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 1.8e-65 253.4 250 56.4
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 1.8e-65 253.4 228 58.8
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 1.8e-65 253.4 180 68.9
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 2.3e-65 253.1 185 68.1
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 1.2e-64 250.8 240 56.7
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 1.2e-64 250.8 251 51.0
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 3.3e-64 249.2 181 68.0
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 5.7e-64 248.4 192 64.6
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 7.5e-64 248.1 324 46.0
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.8e-63 246.1 267 51.3
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.8e-63 246.1 267 51.3
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 6.3e-63 245.0 176 67.6
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 8.2e-63 244.6 185 64.3
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.8e-62 243.4 181 66.9
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 3.1e-62 242.7 191 61.3
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 4.1e-62 242.3 237 49.8
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 9.1e-62 241.1 175 67.4
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 9.1e-62 241.1 175 67.4
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 7.7e-61 238.0 186 66.1
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.0e-60 237.7 273 49.1
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 1.7e-60 236.9 169 68.0
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 3.2e-59 232.6 167 67.1
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 6.1e-58 228.4 245 50.6
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 2.3e-57 226.5 247 51.4
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 2.3e-57 226.5 236 51.3
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 5.2e-57 225.3 180 61.1
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.5e-56 223.8 182 62.1
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 5.7e-56 221.9 163 62.6
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 4.1e-54 215.7 233 50.2
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 5.4e-54 215.3 154 69.5
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 3.8e-52 209.1 197 55.8
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.3e-49 199.9 133 72.2
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 7.5e-48 194.9 223 49.3
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 7.5e-48 194.9 223 49.3
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.3e-47 194.1 135 66.7
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.8e-47 193.0 152 62.5
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 4.9e-47 192.2 172 58.7
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 8.3e-47 191.4 125 68.8
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 9.5e-43 177.9 153 60.1
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 3.0e-41 172.9 186 50.0
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.6e-34 150.6 213 40.8
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 1.2e-29 134.4 127 54.3
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 3.3e-19 99.8 108 53.7
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 9.5e-19 98.2 103 50.5
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 4.0e-17 92.8 237 29.5
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 4.0e-17 92.8 146 42.5
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 8.9e-17 91.7 69 62.3
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 5.8e-16 89.0 60 65.0
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 1.9e-11 73.9 43 69.8
Actinidia04198 Actinidia chinensis HOM05D000749 ORTHO05D005685 1.1e-06 58.2 36 72.2


User provided reference genes

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