Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 0.0e+00 2025.8 1386 100.0
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 0.0e+00 1461.0 1514 73.7
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 0.0e+00 1426.8 1440 73.4
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 4.5e-296 1021.9 1444 60.7
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.6e-261 907.1 808 64.0
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 8.9e-252 874.8 1434 56.5
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.2e-248 864.4 1422 51.1
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.8e-223 780.8 711 62.6
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 1.1e-220 771.5 1190 55.3
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 3.4e-211 740.0 747 59.3
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 1.4e-191 674.9 1470 52.1
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 1.4e-185 654.8 1434 47.5
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.2e-184 651.7 670 58.1
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 5.3e-180 636.3 638 59.6
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 4.5e-179 633.3 1315 41.4
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 8.5e-170 602.4 1471 48.2
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 1.3e-154 552.0 1441 46.6
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.3e-149 535.4 1480 34.9
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 4.1e-140 503.8 1507 34.0
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 1.2e-136 492.3 1454 44.9
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 2.8e-136 491.1 836 42.3
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 4.7e-136 490.3 1447 43.7
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 2.3e-135 488.0 1442 41.8
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 6.8e-135 486.5 1517 44.0
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 6.4e-133 479.9 1469 44.5
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 6.4e-133 479.9 1469 44.5
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 8.9e-127 459.5 1490 33.6
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 2.0e-126 458.4 1465 42.9
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 1.4e-124 452.2 1263 47.3
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 3.2e-124 451.1 1265 49.3
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 2.5e-121 441.4 1440 41.5
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 9.0e-119 433.0 1422 44.6
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 9.0e-119 433.0 812 37.9
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 3.2e-116 424.5 1466 34.6
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 2.1e-112 411.8 1471 31.1
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 1.8e-111 408.7 1481 30.8
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 9.9e-110 402.9 1533 31.2
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.1e-108 399.4 1495 41.1
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 5.1e-106 390.6 1459 43.0
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 2.0e-102 378.6 1428 36.5
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.2e-100 371.3 744 37.4
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 9.3e-100 369.8 817 35.9
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 3.9e-98 364.4 1424 34.2
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 1.1e-97 362.8 818 35.6
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.1e-97 362.8 806 37.0
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 4.0e-95 354.4 824 36.7
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 5.3e-95 354.0 818 34.6
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 5.8e-94 350.5 709 36.8
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 1.4e-92 345.9 806 36.7
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 3.2e-92 344.7 873 34.1
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 1.2e-91 342.8 709 36.5
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 3.5e-91 341.3 811 34.4
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 1.8e-90 339.0 818 35.2
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 5.7e-89 334.0 833 32.3
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 1.6e-88 332.4 833 34.6
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 2.2e-88 332.0 792 36.1
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 1.1e-87 329.7 831 35.3
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.4e-87 328.6 843 34.4
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 3.1e-87 328.2 737 36.9
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 3.1e-87 328.2 401 57.9
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 4.1e-87 327.8 831 34.5
vmacro11360 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 4.1e-87 327.8 428 55.6
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 1.2e-86 326.2 806 34.5
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 5.9e-86 323.9 820 35.2
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 7.7e-86 323.6 839 34.6
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 5.0e-85 320.9 816 32.4
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 1.4e-84 319.3 824 34.3
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 1.9e-84 318.9 833 34.3
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 2.5e-84 318.5 761 35.3
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 3.2e-84 318.2 813 33.7
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 7.9e-83 313.5 811 33.7
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.8e-82 312.4 836 34.2
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 1.1e-81 309.7 797 33.9
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 3.3e-81 308.1 820 33.8
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 4.3e-81 307.8 818 33.4
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 1.3e-80 306.2 1250 29.8
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 4.8e-80 304.3 786 33.7
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 6.3e-80 303.9 822 34.2
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 1.8e-79 302.4 808 34.3
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 1.8e-79 302.4 898 31.3
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 6.9e-79 300.4 922 31.8
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.5e-78 299.3 1470 39.3
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 4.5e-78 297.7 815 34.1
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 1.7e-77 295.8 824 33.5
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 2.2e-77 295.4 1251 29.6
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 8.5e-77 293.5 827 32.6
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 1.4e-76 292.7 821 33.4
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 5.5e-76 290.8 821 31.4
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 7.2e-76 290.4 851 32.3
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.2e-75 289.7 809 32.6
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 3.6e-75 288.1 1464 30.6
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.4e-74 286.2 202 74.3
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.4e-74 286.2 202 74.3
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.3e-74 285.4 808 33.2
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.0e-74 285.0 815 33.3
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.9e-74 284.6 815 33.3
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 8.8e-74 283.5 841 34.1
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.1e-73 283.1 810 33.6
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 1.5e-73 282.7 754 32.8
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 3.3e-73 281.6 816 33.0
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 2.8e-72 278.5 1442 40.4
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 2.8e-72 278.5 1502 35.8
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 3.7e-72 278.1 807 32.3
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.1e-71 276.6 810 33.1
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 7.0e-71 273.9 823 31.5
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 3.5e-70 271.6 1080 42.5
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 7.7e-70 270.4 814 32.9
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 7.7e-70 270.4 763 33.3
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 1.0e-69 270.0 817 30.4
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 6.5e-69 267.3 814 32.7
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 8.5e-69 266.9 816 30.8
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 1.2e-67 263.1 813 30.9
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 8.0e-67 260.4 839 30.9
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 2.3e-66 258.8 823 30.6
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 6.7e-66 257.3 834 31.4
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 1.5e-65 256.1 801 31.6
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 2.0e-65 255.8 833 30.7
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 4.4e-65 254.6 803 32.0
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 4.4e-65 254.6 807 32.2
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 1.3e-64 253.1 799 31.4
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 4.8e-64 251.1 824 30.9
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 7.7e-62 243.8 839 30.8
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.3e-61 243.0 600 33.8
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 1.1e-60 240.0 1350 33.5
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 9.4e-60 236.9 590 34.9
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 2.1e-59 235.7 820 31.6
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 2.7e-59 235.3 684 32.5
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 4.7e-59 234.6 803 31.0
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 6.8e-58 230.7 676 32.2
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.2e-57 229.9 493 34.9
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 1.4e-55 223.0 797 29.9
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 1.8e-55 222.6 472 37.1
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 1.8e-55 222.6 828 30.4
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 3.1e-55 221.9 810 30.6
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 3.1e-55 221.9 880 28.4
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 3.8e-53 214.9 685 30.9
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 3.8e-53 214.9 687 32.8
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 1.9e-52 212.6 821 31.1
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 7.2e-52 210.7 691 30.8
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 9.4e-52 210.3 668 33.1
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.7e-51 208.8 588 33.0
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 4.7e-51 208.0 719 30.5
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 3.0e-50 205.3 599 33.1
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 3.4e-49 201.8 667 30.9
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 2.2e-48 199.1 699 30.6
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 1.0e-45 190.3 1074 38.4
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 9.5e-44 183.7 590 31.9
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 4.4e-41 174.9 560 30.9
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 2.2e-40 172.6 598 27.4
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 2.2e-40 172.6 669 29.1
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 3.5e-38 165.2 456 32.9
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 4.5e-38 164.9 619 28.8
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.0e-34 153.7 646 29.1
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.4e-31 143.3 642 27.7
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 3.2e-31 142.1 696 27.2
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.6e-30 139.8 713 27.9
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 2.1e-27 129.4 676 26.2
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.2e-25 123.6 862 26.3
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.3e-24 120.2 844 24.6
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.1e-23 117.1 314 39.5
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 5.4e-23 114.8 377 36.6
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 1.1e-18 100.5 558 25.4
unitig_0.g2843 Utricularia gibba HOM05D047057 ORTHO05D004714 4.7e-11 75.1 277 27.4
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 7.1e-07 61.2 177 30.5


User provided reference genes

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