Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0243800 Rhododendron simsii HOM05D007727 ORTHO05D009078 2.1e-89 332.4 174 100.0
Rhsim02G0243900 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.7e-51 206.5 116 92.2
Rhsim02G0244000 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.6e-49 199.9 118 87.3
Rhsim02G0243600 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.6e-41 173.3 111 84.7
Rhsim02G0243700 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.3e-38 163.7 110 82.7
Hma1.2p1_1746F.1_g300420 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 2.0e-20 103.2 118 51.7
CSS0019090 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 3.5e-20 102.4 136 48.5
CSS0050195 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 3.8e-19 99.0 115 55.7
Dinv38830 Davidia involucrata HOM05D007727 ORTHO05D009078 8.6e-19 97.8 98 61.2
Hma1.2p1_1461F.1_g285060 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 2.5e-18 96.3 66 71.2
Hma1.2p1_2808F.1_g328866 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 2.5e-18 96.3 66 71.2
Hma1.2p1_1461F.1_g285070 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 1.6e-17 93.6 66 71.2
Sabra01G0067700 Salix brachista HOM05D007727 ORTHO05D009078 3.6e-17 92.4 69 63.8
CiPaw.12G082800 Carya illinoinensis HOM05D007727 ORTHO05D009078 1.4e-16 90.5 128 47.7
CiPaw.12G082600 Carya illinoinensis HOM05D007727 ORTHO05D009078 3.0e-16 89.4 128 46.9
COL.COLO4_10705 Corchorus olitorius HOM05D007727 ORTHO05D009078 1.2e-15 87.4 115 46.1
Potri.003G140200 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.2e-15 87.4 120 45.0
Potri.003G140233 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.2e-15 87.4 120 45.0
Potri.003G140266 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.2e-15 87.4 120 45.0
Sabra01G0067800 Salix brachista HOM05D007727 ORTHO05D009078 2.6e-15 86.3 120 44.2
Potri.004G151000 Populus trichocarpa HOM05D007727 ORTHO05D009078 9.8e-15 84.3 120 43.3
Eucgr.D01742 Eucalyptus grandis HOM05D007727 ORTHO05D009078 1.3e-14 84.0 64 68.8
Manes.02G009800 Manihot esculenta HOM05D007727 ORTHO05D009078 1.3e-14 84.0 115 47.0
Duzib205G0888 Durio zibethinus HOM05D007727 ORTHO05D009078 8.3e-14 81.3 61 63.9
Potri.001G091400 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.1e-13 80.9 84 53.6
Thecc.03G298300 Theobroma cacao HOM05D007727 ORTHO05D009078 1.1e-13 80.9 136 41.2
Cfa012003 Carpinus fangiana HOM05D007727 ORTHO05D009078 1.4e-13 80.5 112 47.3
Cfa012008 Carpinus fangiana HOM05D007727 ORTHO05D009078 1.4e-13 80.5 112 47.3
CiPaw.11G121100 Carya illinoinensis HOM05D007727 ORTHO05D009078 1.4e-13 80.5 117 44.4
Eucgr.D01747 Eucalyptus grandis HOM05D007727 ORTHO05D009078 4.1e-13 79.0 106 46.2
QL02p030393 Quercus lobata HOM05D007727 ORTHO05D009078 4.1e-13 79.0 116 45.7
Eucgr.D01744 Eucalyptus grandis HOM05D007727 ORTHO05D009078 7.0e-13 78.2 64 64.1
LjContig00312_ERROPOS870357g0016151 Lotus japonicus HOM05D007727 ORTHO05D009078 7.0e-13 78.2 96 46.9
Glyma.01G225500 Glycine max HOM05D007727 ORTHO05D009078 1.2e-12 77.4 93 49.5
Gorai.004G133300 Gossypium raimondii HOM05D007727 ORTHO05D009078 1.2e-12 77.4 109 43.1
Gohir.D08G130400 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.6e-12 77.0 109 43.1
Haze_09064 Corylus avellana HOM05D007727 ORTHO05D009078 2.0e-12 76.6 107 41.1
QL02p030408 Quercus lobata HOM05D007727 ORTHO05D009078 2.0e-12 76.6 116 44.8
Glyma.11G017500 Glycine max HOM05D007727 ORTHO05D009078 2.7e-12 76.3 97 47.4
QL02p030389 Quercus lobata HOM05D007727 ORTHO05D009078 3.5e-12 75.9 116 44.0
Glyma.05G216900 Glycine max HOM05D007727 ORTHO05D009078 6.0e-12 75.1 102 49.0
Cfa012009 Carpinus fangiana HOM05D007727 ORTHO05D009078 7.8e-12 74.7 67 55.2
Haze_09065 Corylus avellana HOM05D007727 ORTHO05D009078 7.8e-12 74.7 112 42.0
QL02p030384 Quercus lobata HOM05D007727 ORTHO05D009078 7.8e-12 74.7 117 43.6
Glyma.08G023200 Glycine max HOM05D007727 ORTHO05D009078 1.7e-11 73.6 100 48.0
Oeu031672.1 Olea europaea HOM05D007727 ORTHO05D009078 1.7e-11 73.6 100 51.0
ECA240G1351 Erigeron canadensis HOM05D007727 ORTHO05D009078 3.0e-11 72.8 62 62.9
Oeu031673.1 Olea europaea HOM05D007727 ORTHO05D009078 3.0e-11 72.8 104 50.0
FAN13G2104 Fragaria x ananassa HOM05D007727 ORTHO05D009078 3.9e-11 72.4 123 40.7
FAN13G3265 Fragaria x ananassa HOM05D007727 ORTHO05D009078 3.9e-11 72.4 123 40.7
Gohir.A08G103450 Gossypium hirsutum HOM05D007727 ORTHO05D009078 5.0e-11 72.0 109 46.8
MSTRG.25675 Avicennia marina HOM05D007727 ORTHO05D009078 1.1e-10 70.9 101 43.6
Phvul.002G164400 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.1e-10 70.9 91 50.5
FvH4_5g04620 Fragaria vesca HOM05D007727 ORTHO05D009078 1.5e-10 70.5 123 39.8
FAN08G2749 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.5e-10 70.5 123 39.8
FAN18G4426 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.5e-10 70.5 123 39.8
CANSAT21G1217 Cannabis sativa HOM05D007727 ORTHO05D009078 2.5e-10 69.7 76 51.3
FAN18G0179 Fragaria x ananassa HOM05D007727 ORTHO05D009078 2.5e-10 69.7 123 39.0
Glyma.08G022800 Glycine max HOM05D007727 ORTHO05D009078 3.3e-10 69.3 104 47.1
Ciclev10022327m.g Citrus clementina HOM05D007727 ORTHO05D009078 4.3e-10 68.9 89 48.3
Gohir.D03G083800 Gossypium hirsutum HOM05D007727 ORTHO05D009078 4.3e-10 68.9 113 40.7
Gorai.003G078900 Gossypium raimondii HOM05D007727 ORTHO05D009078 4.3e-10 68.9 113 40.7
Phvul.002G298200 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 4.3e-10 68.9 94 44.7
Phvul.002G298600 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 4.3e-10 68.9 94 44.7
FAN04G2059 Fragaria x ananassa HOM05D007727 ORTHO05D009078 5.6e-10 68.6 104 41.3
Gohir.A02G100000 Gossypium hirsutum HOM05D007727 ORTHO05D009078 5.6e-10 68.6 109 40.4
Nitab4.5_0002782g0050 Nicotiana tabacum HOM05D011491 ORTHO05D009078 5.6e-10 68.6 48 68.8
PGSC0003DMG400012146 Solanum tuberosum HOM05D011491 ORTHO05D009078 7.3e-10 68.2 131 38.9
Sopen08g030640 Solanum pennellii HOM05D011491 ORTHO05D009078 9.5e-10 67.8 47 72.3
Lj4g0015473 Lotus japonicus HOM05D007727 ORTHO05D009078 1.2e-09 67.4 98 48.0
Prupe.5G120300 Prunus persica HOM05D007727 ORTHO05D009078 1.6e-09 67.0 114 41.2
TPR.G3394 Trifolium pratense HOM05D007727 ORTHO05D009078 1.6e-09 67.0 98 43.9
ClCG07G011610 Citrullus lanatus HOM05D007727 ORTHO05D009078 2.1e-09 66.6 98 38.8
CAN.G1804.6 Capsicum annuum HOM05D011491 ORTHO05D009078 4.7e-09 65.5 134 40.3
Nitab4.5_0001210g0030 Nicotiana tabacum HOM05D011491 ORTHO05D009078 6.2e-09 65.1 64 51.6
TPR.G11121 Trifolium pratense HOM05D007727 ORTHO05D009078 6.2e-09 65.1 98 42.9
CAN.G1804.7 Capsicum annuum HOM05D011491 ORTHO05D009078 1.4e-08 63.9 134 40.3
VMungo1215G2373 Vigna mungo HOM05D007727 ORTHO05D009078 1.4e-08 63.9 89 43.8
AUR62010842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 1.8e-08 63.5 51 51.0
Nitab4.5_0009000g0010 Nicotiana tabacum HOM05D011491 ORTHO05D009078 1.8e-08 63.5 141 39.7
TPR.G3415 Trifolium pratense HOM05D007727 ORTHO05D009078 2.3e-08 63.2 92 41.3
TPR.G3425 Trifolium pratense HOM05D007727 ORTHO05D009078 2.3e-08 63.2 88 43.2
Nitab4.5_0002782g0020 Nicotiana tabacum HOM05D011491 ORTHO05D009078 4.0e-08 62.4 45 66.7
PGSC0003DMG400012147 Solanum tuberosum HOM05D011491 ORTHO05D009078 6.8e-08 61.6 148 36.5
AUR62019842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 8.9e-08 61.2 53 47.2
PGSC0003DMG400012145 Solanum tuberosum HOM05D011491 ORTHO05D009078 1.5e-07 60.5 45 66.7
Lalb_Chr05g0224131 Lupinus albus HOM05D007727 ORTHO05D009078 2.0e-07 60.1 96 42.7
Medtr5g009290 Medicago truncatula HOM05D007727 ORTHO05D009078 2.0e-07 60.1 59 54.2
PGSC0003DMG400012144 Solanum tuberosum HOM05D011491 ORTHO05D009078 2.6e-07 59.7 111 41.4
Lj4g0008549 Lotus japonicus HOM05D007727 ORTHO05D009078 3.4e-07 59.3 51 56.9
Peaxi162Scf00074g00092 Petunia axillaris HOM05D011491 ORTHO05D009078 4.4e-07 58.9 107 40.2
Glyma.05G217200 Glycine max HOM05D007727 ORTHO05D009078 7.5e-07 58.2 92 41.3
Sed0000706 Sechium edule HOM05D007727 ORTHO05D009078 7.5e-07 58.2 84 41.7
VMungo0251G2989 Vigna mungo HOM05D007727 ORTHO05D009078 9.8e-07 57.8 98 37.8
Solyc08g082380.1 Solanum lycopersicum HOM05D011491 ORTHO05D009078 1.3e-06 57.4 101 42.6
Sabra03G0101200 Salix brachista HOM05D007727 ORTHO05D009078 2.2e-06 56.6 56 57.1
MSTRG.25674 Avicennia marina HOM05D007727 ORTHO05D009078 2.9e-06 56.2 103 37.9
TAR374G1599 Trochodendron aralioides HOM05D026466 ORTHO05D009078 2.9e-06 56.2 71 50.7
CsaV3_4G006600 Cucumis sativus L. HOM05D007727 ORTHO05D009078 6.4e-06 55.1 83 38.6
Peaxi162Scf00074g00091 Petunia axillaris HOM05D011491 ORTHO05D009078 6.4e-06 55.1 106 39.6


User provided reference genes

Program Settings