Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0243700 Rhododendron simsii HOM05D007727 ORTHO05D009078 2.2e-73 278.9 143 100.0
Rhsim02G0243900 Rhododendron simsii HOM05D007727 ORTHO05D009078 3.6e-55 218.4 145 82.8
Rhsim02G0244000 Rhododendron simsii HOM05D007727 ORTHO05D009078 2.4e-51 205.7 145 77.2
Rhsim02G0243600 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.0e-41 173.7 145 71.0
Rhsim02G0243800 Rhododendron simsii HOM05D007727 ORTHO05D009078 8.0e-39 164.1 110 82.7
CSS0019090 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 3.3e-24 115.5 161 46.6
Hma1.2p1_1746F.1_g300420 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 3.3e-24 115.5 144 49.3
CSS0050195 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 2.6e-21 105.9 146 48.6
Dinv38830 Davidia involucrata HOM05D007727 ORTHO05D009078 3.4e-21 105.5 129 51.9
Hma1.2p1_1461F.1_g285070 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 2.4e-19 99.4 148 43.2
Hma1.2p1_1461F.1_g285060 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 2.7e-18 95.9 66 69.7
Hma1.2p1_2808F.1_g328866 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 2.7e-18 95.9 66 69.7
CiPaw.12G082800 Carya illinoinensis HOM05D007727 ORTHO05D009078 5.0e-17 91.7 121 48.8
Potri.003G140200 Populus trichocarpa HOM05D007727 ORTHO05D009078 4.3e-16 88.6 137 42.3
Potri.003G140233 Populus trichocarpa HOM05D007727 ORTHO05D009078 4.3e-16 88.6 137 42.3
CiPaw.12G082600 Carya illinoinensis HOM05D007727 ORTHO05D009078 9.5e-16 87.4 121 47.9
Potri.001G091400 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.2e-15 87.0 143 42.0
Manes.02G009800 Manihot esculenta HOM05D007727 ORTHO05D009078 1.6e-15 86.7 131 45.0
Potri.003G140266 Populus trichocarpa HOM05D007727 ORTHO05D009078 2.1e-15 86.3 131 42.7
Potri.004G151000 Populus trichocarpa HOM05D007727 ORTHO05D009078 2.8e-15 85.9 140 42.1
COL.COLO4_10705 Corchorus olitorius HOM05D007727 ORTHO05D009078 8.1e-15 84.3 118 46.6
Cfa012003 Carpinus fangiana HOM05D007727 ORTHO05D009078 1.1e-14 84.0 113 46.0
Cfa012008 Carpinus fangiana HOM05D007727 ORTHO05D009078 1.1e-14 84.0 113 46.0
Sabra01G0067800 Salix brachista HOM05D007727 ORTHO05D009078 1.1e-14 84.0 142 38.7
QL02p030393 Quercus lobata HOM05D007727 ORTHO05D009078 1.8e-14 83.2 123 46.3
Eucgr.D01747 Eucalyptus grandis HOM05D007727 ORTHO05D009078 5.2e-14 81.6 135 40.7
Sabra01G0067700 Salix brachista HOM05D007727 ORTHO05D009078 6.8e-14 81.3 141 37.6
Haze_09065 Corylus avellana HOM05D007727 ORTHO05D009078 8.9e-14 80.9 113 45.1
Eucgr.D01742 Eucalyptus grandis HOM05D007727 ORTHO05D009078 8.9e-14 80.9 64 65.6
QL02p030408 Quercus lobata HOM05D007727 ORTHO05D009078 8.9e-14 80.9 123 45.5
Thecc.03G298300 Theobroma cacao HOM05D007727 ORTHO05D009078 8.9e-14 80.9 115 45.2
Haze_09064 Corylus avellana HOM05D007727 ORTHO05D009078 2.6e-13 79.3 114 43.9
Duzib205G0888 Durio zibethinus HOM05D007727 ORTHO05D009078 5.8e-13 78.2 115 44.3
Oeu031672.1 Olea europaea HOM05D007727 ORTHO05D009078 5.8e-13 78.2 111 46.8
PGSC0003DMG400012146 Solanum tuberosum HOM05D011491 ORTHO05D009078 5.8e-13 78.2 152 38.8
QL02p030389 Quercus lobata HOM05D007727 ORTHO05D009078 7.5e-13 77.8 121 46.3
Cfa012009 Carpinus fangiana HOM05D007727 ORTHO05D009078 9.9e-13 77.4 114 44.7
CiPaw.11G121100 Carya illinoinensis HOM05D007727 ORTHO05D009078 1.7e-12 76.6 115 42.6
Oeu031673.1 Olea europaea HOM05D007727 ORTHO05D009078 1.7e-12 76.6 115 51.3
MSTRG.25675 Avicennia marina HOM05D007727 ORTHO05D009078 2.2e-12 76.3 108 40.7
Glyma.01G225500 Glycine max HOM05D007727 ORTHO05D009078 2.2e-12 76.3 53 67.9
Glyma.11G017500 Glycine max HOM05D007727 ORTHO05D009078 2.2e-12 76.3 54 66.7
Eucgr.D01744 Eucalyptus grandis HOM05D007727 ORTHO05D009078 2.9e-12 75.9 64 60.9
QL02p030384 Quercus lobata HOM05D007727 ORTHO05D009078 3.7e-12 75.5 136 42.6
Gohir.D03G083800 Gossypium hirsutum HOM05D007727 ORTHO05D009078 8.3e-12 74.3 90 52.2
Gorai.004G133300 Gossypium raimondii HOM05D007727 ORTHO05D009078 1.4e-11 73.6 129 37.2
LjContig00312_ERROPOS870357g0016151 Lotus japonicus HOM05D007727 ORTHO05D009078 1.4e-11 73.6 97 43.3
Gohir.D08G130400 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.9e-11 73.2 129 37.2
FAN08G2749 Fragaria x ananassa HOM05D007727 ORTHO05D009078 2.4e-11 72.8 146 37.7
FAN18G0179 Fragaria x ananassa HOM05D007727 ORTHO05D009078 3.2e-11 72.4 146 38.4
Glyma.05G216900 Glycine max HOM05D007727 ORTHO05D009078 3.2e-11 72.4 111 45.9
FvH4_5g04620 Fragaria vesca HOM05D007727 ORTHO05D009078 4.1e-11 72.0 146 38.4
FAN18G4426 Fragaria x ananassa HOM05D007727 ORTHO05D009078 4.1e-11 72.0 146 38.4
Gohir.A02G100000 Gossypium hirsutum HOM05D007727 ORTHO05D009078 7.1e-11 71.2 90 51.1
FAN13G2104 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.2e-10 70.5 149 35.6
FAN13G3265 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.2e-10 70.5 149 35.6
Gorai.003G078900 Gossypium raimondii HOM05D007727 ORTHO05D009078 1.2e-10 70.5 130 39.2
FAN04G2059 Fragaria x ananassa HOM05D007727 ORTHO05D009078 2.1e-10 69.7 123 39.0
Glyma.08G023200 Glycine max HOM05D007727 ORTHO05D009078 2.1e-10 69.7 98 43.9
Gohir.A08G103450 Gossypium hirsutum HOM05D007727 ORTHO05D009078 2.1e-10 69.7 126 37.3
Nitab4.5_0002782g0050 Nicotiana tabacum HOM05D011491 ORTHO05D009078 2.1e-10 69.7 99 46.5
Sopen08g030640 Solanum pennellii HOM05D011491 ORTHO05D009078 2.1e-10 69.7 138 41.3
Phvul.002G164400 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 2.7e-10 69.3 105 45.7
Nitab4.5_0002782g0020 Nicotiana tabacum HOM05D011491 ORTHO05D009078 4.6e-10 68.6 43 74.4
Peaxi162Scf00074g00092 Petunia axillaris HOM05D011491 ORTHO05D009078 4.6e-10 68.6 104 46.2
CANSAT21G1217 Cannabis sativa HOM05D007727 ORTHO05D009078 7.8e-10 67.8 77 50.6
Glyma.08G022800 Glycine max HOM05D007727 ORTHO05D009078 7.8e-10 67.8 113 43.4
CAN.G1804.6 Capsicum annuum HOM05D011491 ORTHO05D009078 1.0e-09 67.4 135 40.0
Phvul.002G298200 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.0e-09 67.4 114 40.4
Phvul.002G298600 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.0e-09 67.4 114 40.4
Prupe.5G120300 Prunus persica HOM05D007727 ORTHO05D009078 1.3e-09 67.0 136 39.0
Lalb_Chr05g0224131 Lupinus albus HOM05D007727 ORTHO05D009078 1.7e-09 66.6 131 38.2
PGSC0003DMG400012147 Solanum tuberosum HOM05D011491 ORTHO05D009078 1.7e-09 66.6 132 39.4
Lj4g0015473 Lotus japonicus HOM05D007727 ORTHO05D009078 2.3e-09 66.2 133 39.8
Nitab4.5_0001210g0030 Nicotiana tabacum HOM05D011491 ORTHO05D009078 2.3e-09 66.2 125 39.2
CAN.G1804.7 Capsicum annuum HOM05D011491 ORTHO05D009078 3.0e-09 65.9 135 40.0
Peaxi162Scf00074g00091 Petunia axillaris HOM05D011491 ORTHO05D009078 3.0e-09 65.9 118 40.7
PGSC0003DMG400012144 Solanum tuberosum HOM05D011491 ORTHO05D009078 5.1e-09 65.1 119 42.0
VMungo1215G2373 Vigna mungo HOM05D007727 ORTHO05D009078 5.1e-09 65.1 98 39.8
ECA240G1351 Erigeron canadensis HOM05D007727 ORTHO05D009078 6.6e-09 64.7 62 58.1
Ciclev10022327m.g Citrus clementina HOM05D007727 ORTHO05D009078 8.6e-09 64.3 132 38.6
TPR.G3425 Trifolium pratense HOM05D007727 ORTHO05D009078 1.1e-08 63.9 90 44.4
PGSC0003DMG400012145 Solanum tuberosum HOM05D011491 ORTHO05D009078 1.9e-08 63.2 133 40.6
TPR.G3415 Trifolium pratense HOM05D007727 ORTHO05D009078 3.3e-08 62.4 90 44.4
Solyc08g082380.1 Solanum lycopersicum HOM05D011491 ORTHO05D009078 5.6e-08 61.6 126 37.3
TPR.G11121 Trifolium pratense HOM05D007727 ORTHO05D009078 9.5e-08 60.8 115 37.4
Nitab4.5_0009000g0010 Nicotiana tabacum HOM05D011491 ORTHO05D009078 1.2e-07 60.5 57 56.1
AUR62019842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 4.7e-07 58.5 56 42.9
Medtr5g009290 Medicago truncatula HOM05D007727 ORTHO05D009078 4.7e-07 58.5 60 50.0
Medtr8g099485 Medicago truncatula HOM05D007727 ORTHO05D009078 4.7e-07 58.5 97 40.2
TPR.G3394 Trifolium pratense HOM05D007727 ORTHO05D009078 4.7e-07 58.5 112 37.5
AUR62010842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 6.2e-07 58.2 53 43.4
VMungo0251G2989 Vigna mungo HOM05D007727 ORTHO05D009078 6.2e-07 58.2 99 36.4
MSTRG.25674 Avicennia marina HOM05D007727 ORTHO05D009078 1.1e-06 57.4 120 35.8
Glyma.05G217200 Glycine max HOM05D007727 ORTHO05D009078 1.4e-06 57.0 128 34.4
Sed0000706 Sechium edule HOM05D007727 ORTHO05D009078 1.4e-06 57.0 83 36.1
ClCG07G011610 Citrullus lanatus HOM05D007727 ORTHO05D009078 1.8e-06 56.6 108 32.4
Lj4g0008549 Lotus japonicus HOM05D007727 ORTHO05D009078 3.1e-06 55.8 66 45.5
Nitab4.5_0001210g0040 Nicotiana tabacum HOM05D011491 ORTHO05D009078 5.2e-06 55.1 47 55.3


User provided reference genes

Program Settings