Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 1.4e-51 206.1 106 100.0
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 3.6e-28 128.3 105 68.6
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 3.1e-27 125.2 112 65.2
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 5.8e-26 120.9 109 65.1
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 7.5e-26 120.6 106 65.1
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 6.4e-25 117.5 104 62.5
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 3.2e-24 115.2 104 61.5
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 4.6e-23 111.3 119 58.0
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 1.7e-22 109.4 107 57.0
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 1.1e-21 106.7 106 60.4
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.5e-21 106.3 103 58.3
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 3.3e-21 105.1 107 59.8
DCAR_006487 Daucus carota HOM05D007590 ORTHO05D007875 1.2e-20 103.2 111 56.8
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 1.2e-20 103.2 107 57.0
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 4.7e-20 101.3 111 61.3
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 6.2e-20 100.9 111 55.0
Potri.001G091500 Populus trichocarpa HOM05D007590 ORTHO05D007875 8.1e-20 100.5 107 56.1
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 1.8e-19 99.4 106 53.8
Actinidia22161 Actinidia chinensis HOM05D007590 ORTHO05D007875 8.9e-19 97.1 103 59.2
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 8.9e-19 97.1 115 54.8
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 8.9e-19 97.1 110 54.5
Sabra03G0101100 Salix brachista HOM05D007590 ORTHO05D007875 1.5e-18 96.3 106 53.8
Peaxi162Scf00074g00097 Petunia axillaris HOM05D007590 ORTHO05D007875 3.4e-18 95.1 86 64.0
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 4.4e-18 94.7 114 53.5
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 1.3e-17 93.2 109 52.3
MSTRG.25673 Avicennia marina HOM05D007590 ORTHO05D007875 1.3e-17 93.2 107 50.5
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 1.7e-17 92.8 113 55.8
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 2.2e-17 92.4 114 54.4
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 2.9e-17 92.0 109 53.2
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 1.1e-16 90.1 111 52.3
Phvul.002G164500 Phaseolus vulgaris HOM05D007590 ORTHO05D007875 1.1e-16 90.1 104 51.0
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 1.1e-16 90.1 104 54.8
MSTRG.11924 Avicennia marina HOM05D007590 ORTHO05D007875 1.4e-16 89.7 103 51.5
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 1.9e-16 89.4 113 54.0
Glyma.01G225600 Glycine max HOM05D007590 ORTHO05D007875 1.9e-16 89.4 109 50.5
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 3.2e-16 88.6 113 54.0
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 3.2e-16 88.6 112 52.7
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 5.4e-16 87.8 111 52.3
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 5.4e-16 87.8 113 53.1
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 7.1e-16 87.4 105 55.2
CDE10G0927 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 9.2e-16 87.0 100 50.0
Oeu063521.1 Olea europaea HOM05D007590 ORTHO05D007875 9.2e-16 87.0 110 52.7
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 9.2e-16 87.0 105 55.2
CDE10G0175 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 2.1e-15 85.9 105 49.5
Lsat_1_v5_gn_6_83961 Lactuca sativa HOM05D007590 ORTHO05D007875 2.1e-15 85.9 109 52.3
Nitab4.5_0002782g0040 Nicotiana tabacum HOM05D007590 ORTHO05D007875 2.7e-15 85.5 100 55.0
Sabra01G0067900 Salix brachista HOM05D007590 ORTHO05D007875 2.7e-15 85.5 102 51.0
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 2.7e-15 85.5 109 49.5
Nitab4.5_0001231g0140 Nicotiana tabacum HOM05D007590 ORTHO05D007875 6.0e-15 84.3 97 55.7
EL10Ac5g12916 Beta vulgaris HOM05D007590 ORTHO05D007875 7.8e-15 84.0 84 56.0
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 7.8e-15 84.0 104 50.0
TPR.G25602 Trifolium pratense HOM05D007590 ORTHO05D007875 7.8e-15 84.0 105 48.6
Duzib068G0682 Durio zibethinus HOM05D007590 ORTHO05D007875 1.0e-14 83.6 108 48.1
Ca_24513_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 1.3e-14 83.2 104 48.1
Ca_29733_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 1.3e-14 83.2 104 48.1
Lalb_Chr05g0211541 Lupinus albus HOM05D007590 ORTHO05D007875 3.9e-14 81.6 107 44.9
Ah.12g052560 Amaranthus hybridus HOM05D007590 ORTHO05D007875 5.1e-14 81.3 120 40.8
Duzib068G0902 Durio zibethinus HOM05D007590 ORTHO05D007875 5.1e-14 81.3 104 50.0
CANSAT21G0370 Cannabis sativa HOM05D007590 ORTHO05D007875 6.6e-14 80.9 125 48.0
HanXRQChr03g0083501 Helianthus annuus HOM05D007590 ORTHO05D007875 1.1e-13 80.1 103 47.6
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 1.5e-13 79.7 115 47.0
CiPaw.12G082700 Carya illinoinensis HOM05D007590 ORTHO05D007875 1.9e-13 79.3 112 50.9
BcaB07g31500 Brassica carinata HOM05D010600 ORTHO05D007875 7.3e-13 77.4 115 42.6
Manes.01G049200 Manihot esculenta HOM05D007590 ORTHO05D007875 7.3e-13 77.4 101 50.5
THA.LOC104817601 Tarenaya hassleriana HOM05D010600 ORTHO05D007875 1.6e-12 76.3 113 48.7
A09p14360 Brassica napus HOM05D010600 ORTHO05D007875 2.1e-12 75.9 115 42.6
BraA09t37083Z Brassica rapa HOM05D010600 ORTHO05D007875 2.1e-12 75.9 115 42.6
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 2.8e-12 75.5 107 44.9
Thhalv10023875m.g Eutrema salsugineum HOM05D010600 ORTHO05D007875 2.8e-12 75.5 118 41.5
SalBow1G4032 Salvia bowleyana HOM05D007590 ORTHO05D007875 4.7e-12 74.7 103 48.5
SalBow1G6340 Salvia bowleyana HOM05D007590 ORTHO05D007875 4.7e-12 74.7 103 48.5
Glyma.11G017400 Glycine max HOM05D007590 ORTHO05D007875 6.2e-12 74.3 116 43.1
Carub.0002s0036 Capsella rubella HOM05D010600 ORTHO05D007875 8.1e-12 73.9 119 41.2
Migut.A00642 Erythranthe guttata HOM05D007590 ORTHO05D007875 1.4e-11 73.2 68 61.8
Sed0003477 Sechium edule HOM05D007590 ORTHO05D007875 1.8e-11 72.8 63 57.1
Sp2g00320 Schrenkiella parvula HOM05D010600 ORTHO05D007875 2.3e-11 72.4 120 40.0
BcaC04g22619 Brassica carinata HOM05D010600 ORTHO05D007875 5.2e-11 71.2 115 40.0
BolC9t54630H Brassica oleracea HOM05D010600 ORTHO05D007875 6.8e-11 70.9 115 40.9
C09p17280 Brassica napus HOM05D010600 ORTHO05D007875 1.2e-10 70.1 115 40.0
Duzib084G0874 Durio zibethinus HOM05D007590 ORTHO05D007875 1.2e-10 70.1 104 44.2
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.2e-10 70.1 104 42.3
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.2e-10 70.1 104 42.3
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 1.2e-10 70.1 104 43.3
Lsat_1_v5_gn_3_10720 Lactuca sativa HOM05D007590 ORTHO05D007875 1.2e-10 70.1 61 55.7
AL2G10440 Arabidopsis lyrata HOM05D010600 ORTHO05D007875 3.4e-10 68.6 118 41.5
MELO3C016294.2 Cucumis melo HOM05D007590 ORTHO05D007875 4.4e-10 68.2 71 53.5
Sed0026863 Sechium edule HOM05D007590 ORTHO05D007875 4.4e-10 68.2 119 42.9
TWI60G0225 Tripterygium wilfordii HOM05D007590 ORTHO05D007875 4.4e-10 68.2 117 44.4
AT1G64405 Arabidopsis thaliana HOM05D010600 ORTHO05D007875 7.6e-10 67.4 122 39.3
ClCG07G011620 Citrullus lanatus HOM05D007590 ORTHO05D007875 7.6e-10 67.4 66 53.0
ATR0602G105 Amborella trichopoda HOM05D007590 ORTHO05D007875 9.9e-10 67.0 132 42.4
COL.COLO4_10703 Corchorus olitorius HOM05D007590 ORTHO05D007875 9.9e-10 67.0 69 52.2
Aa31LG2G1420 Aethionema arabicum HOM05D010600 ORTHO05D007875 1.7e-09 66.2 121 38.0
CARHR046510 Cardamine hirsuta HOM05D010600 ORTHO05D007875 2.2e-09 65.9 119 41.2
Ciclev10022592m.g Citrus clementina HOM05D007590 ORTHO05D007875 3.8e-09 65.1 106 42.5
Eucgr.D01739 Eucalyptus grandis HOM05D007590 ORTHO05D007875 4.9e-09 64.7 136 39.7
MBI06_g08455_MAGBIO Magnolia biondii HOM05D007590 ORTHO05D007875 6.4e-09 64.3 105 40.0
Sopen08g004200 Solanum pennellii HOM05D007590 ORTHO05D007875 6.4e-09 64.3 111 45.9
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 6.4e-09 64.3 111 45.0
SGA_v2.0_scaffold305G47972 Striga asiatica HOM05D007590 ORTHO05D007875 6.4e-09 64.3 108 45.4
Gohir.A12G236500 Gossypium hirsutum HOM05D007590 ORTHO05D007875 8.4e-09 63.9 107 44.9
BcaC04g22568 Brassica carinata HOM05D010600 ORTHO05D007875 1.1e-08 63.5 122 36.9
C09p17810 Brassica napus HOM05D010600 ORTHO05D007875 1.1e-08 63.5 118 38.1
BolC9t54679H Brassica oleracea HOM05D010600 ORTHO05D007875 1.1e-08 63.5 118 38.1
CsaV3_4G006590 Cucumis sativus L. HOM05D007590 ORTHO05D007875 1.4e-08 63.2 113 42.5
HPP92_008631 Vanilla planifolia HOM05D026338 ORTHO05D007875 1.9e-08 62.8 106 39.6
BcaB07g31463 Brassica carinata HOM05D010600 ORTHO05D007875 2.4e-08 62.4 116 37.1
Gohir.A02G100100 Gossypium hirsutum HOM05D007590 ORTHO05D007875 2.1e-07 59.3 100 45.0
PGR031G2453 Punica granatum HOM05D007590 ORTHO05D007875 2.1e-07 59.3 125 40.8
Gohir.D03G083700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 2.7e-07 58.9 100 45.0
Sc07g0010040 Simmondsia chinensis HOM05D007590 ORTHO05D007875 3.5e-07 58.5 127 42.5
Gorai.003G079000 Gossypium raimondii HOM05D007590 ORTHO05D007875 2.3e-06 55.8 100 43.0
A09p14720 Brassica napus HOM05D010600 ORTHO05D007875 3.0e-06 55.5 119 34.5
BraA09t37118Z Brassica rapa HOM05D010600 ORTHO05D007875 3.0e-06 55.5 119 34.5
Gohir.A02G100200 Gossypium hirsutum HOM05D007590 ORTHO05D007875 6.6e-06 54.3 99 40.4
Zm00001eb204270 Zea mays HOM05D021977 ORTHO05D007875 6.6e-06 54.3 59 49.2
Haze_09063 Corylus avellana HOM05D007590 ORTHO05D007875 8.6e-06 53.9 77 48.1


User provided reference genes

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