Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0242400 Rhododendron simsii HOM05D000073 ORTHO05D017192 4.9e-120 434.5 220 100.0
Rhsim13G0213000 Rhododendron simsii HOM05D000073 ORTHO05D017192 5.9e-57 224.9 246 52.8
Actinidia16367 Actinidia chinensis HOM05D000073 ORTHO05D000033 3.3e-23 112.8 150 43.3
Rhsim02G0242300 Rhododendron simsii HOM05D000073 ORTHO05D017192 4.0e-21 105.9 140 50.0
Rhsim03G0050900 Rhododendron simsii HOM05D000073 ORTHO05D017192 8.9e-13 78.2 112 45.5
Actinidia06952 Actinidia chinensis HOM05D000073 ORTHO05D017192 3.4e-12 76.3 115 40.9
Dinv36189 Davidia involucrata HOM05D001192 ORTHO05D010160 4.4e-12 75.9 293 25.9
Dinv07778 Davidia involucrata HOM05D001192 ORTHO05D017192 9.8e-12 74.7 227 26.4
Dinv07782 Davidia involucrata HOM05D001192 ORTHO05D017192 1.9e-10 70.5 220 28.6
Dinv43230 Davidia involucrata HOM05D001192 ORTHO05D010160 1.9e-10 70.5 49 65.3
Rhsim13G0213900 Rhododendron simsii HOM05D001192 ORTHO05D010160 4.1e-10 69.3 309 23.6
Dinv42869 Davidia involucrata HOM05D001192 ORTHO05D010160 1.6e-09 67.4 47 66.0
Dinv43231 Davidia involucrata HOM05D001192 ORTHO05D010160 1.6e-09 67.4 47 66.0
Dinv07797 Davidia involucrata HOM05D001192 ORTHO05D010160 7.8e-09 65.1 57 56.1
EL10Ac4g10119 Beta vulgaris HOM05D001192 ORTHO05D002290 1.3e-08 64.3 45 60.0
EL10Ac4g10169 Beta vulgaris HOM05D001192 ORTHO05D002290 1.3e-08 64.3 45 60.0
Rhsim13G0214000 Rhododendron simsii HOM05D001192 ORTHO05D010160 1.3e-08 64.3 55 50.9
Rhsim13G0215700 Rhododendron simsii HOM05D001192 ORTHO05D010160 1.3e-08 64.3 217 25.8
Rhsim13G0214400 Rhododendron simsii HOM05D001192 ORTHO05D010160 2.3e-08 63.5 223 27.8
Rhsim13G0214700 Rhododendron simsii HOM05D001192 ORTHO05D010160 2.3e-08 63.5 109 34.9
Haze_23203 Corylus avellana HOM05D001192 ORTHO05D002290 3.0e-08 63.2 88 43.2
Rhsim13G0213500 Rhododendron simsii HOM05D001192 ORTHO05D010160 3.9e-08 62.8 56 50.0
Rhsim13G0214900 Rhododendron simsii HOM05D001192 ORTHO05D010160 5.0e-08 62.4 212 26.9
Rhsim13G0215100 Rhododendron simsii HOM05D001192 ORTHO05D010160 5.0e-08 62.4 212 26.9
Rhsim13G0214100 Rhododendron simsii HOM05D001192 ORTHO05D010160 6.6e-08 62.0 233 26.2
Cfa009836 Carpinus fangiana HOM05D001192 ORTHO05D002290 8.6e-08 61.6 87 42.5
Rhsim13G0213800 Rhododendron simsii HOM05D001192 ORTHO05D010160 8.6e-08 61.6 56 48.2
Rhsim13G0213400 Rhododendron simsii HOM05D001192 ORTHO05D010160 1.1e-07 61.2 53 49.1
CiPaw.13G152500 Carya illinoinensis HOM05D001192 ORTHO05D002290 1.5e-07 60.8 58 53.4
Hma1.2p1_0115F.1_g056030 Hydrangea macrophylla HOM05D001192 ORTHO05D010160 1.9e-07 60.5 58 46.6
CDE02G2946 Ceratophyllum demersum HOM05D001192 ORTHO05D002290 2.5e-07 60.1 53 50.9
AUR62039834 Chenopodium quinoa HOM05D001192 ORTHO05D002290 2.5e-07 60.1 154 27.9
CiPaw.14G115000 Carya illinoinensis HOM05D001192 ORTHO05D002290 3.3e-07 59.7 88 39.8
AUR62000176 Chenopodium quinoa HOM05D001192 ORTHO05D002290 4.3e-07 59.3 154 27.9
Carub.0007s2289 Capsella rubella HOM05D001192 ORTHO05D002290 5.6e-07 58.9 73 46.6
Rhsim13G0215400 Rhododendron simsii HOM05D001192 ORTHO05D010160 7.3e-07 58.5 318 26.4
Rhsim13G0215600 Rhododendron simsii HOM05D001192 ORTHO05D010160 7.3e-07 58.5 53 45.3
ATR1098G127 Amborella trichopoda HOM05D001192 ORTHO05D002290 1.2e-06 57.8 64 45.3
Rhsim13G0213300 Rhododendron simsii HOM05D001192 ORTHO05D010160 2.1e-06 57.0 53 49.1
Rhsim13G0215300 Rhododendron simsii HOM05D001192 ORTHO05D010160 2.1e-06 57.0 54 40.7
Sc05g0006060 Simmondsia chinensis HOM05D001192 ORTHO05D002290 2.1e-06 57.0 69 40.6
A06p46120 Brassica napus HOM05D001192 ORTHO05D002290 2.8e-06 56.6 49 46.9
BraA06t27477Z Brassica rapa HOM05D001192 ORTHO05D002290 2.8e-06 56.6 49 46.9
Lalb_Chr15g0086751 Lupinus albus HOM05D001192 ORTHO05D002290 2.8e-06 56.6 73 39.7
Actinidia11662 Actinidia chinensis HOM05D045749 ORTHO05D010160 3.6e-06 56.2 59 49.2
BolC7t43478H Brassica oleracea HOM05D001192 ORTHO05D002290 3.6e-06 56.2 47 46.8
Thhalv10025383m.g Eutrema salsugineum HOM05D001192 ORTHO05D002290 3.6e-06 56.2 47 51.1
TWI12G0673 Tripterygium wilfordii HOM05D001192 ORTHO05D008198 3.6e-06 56.2 99 33.3
CDE05G0926 Ceratophyllum demersum HOM05D001192 ORTHO05D002290 4.7e-06 55.8 49 51.0
Dinv08776 Davidia involucrata HOM05D001192 ORTHO05D002290 4.7e-06 55.8 48 54.2
QL01p017691 Quercus lobata HOM05D001192 ORTHO05D002290 4.7e-06 55.8 82 40.2
Rhsim13G0214600 Rhododendron simsii HOM05D001192 ORTHO05D010160 4.7e-06 55.8 56 46.4
AT5G46170 Arabidopsis thaliana HOM05D001192 ORTHO05D002290 6.2e-06 55.5 47 48.9
CARHR175620 Cardamine hirsuta HOM05D001192 ORTHO05D002290 6.2e-06 55.5 47 51.1
Lsat_1_v5_gn_3_113880 Lactuca sativa HOM05D001192 ORTHO05D010160 6.2e-06 55.5 300 20.3
TWI53G0821 Tripterygium wilfordii HOM05D001192 ORTHO05D002290 6.2e-06 55.5 64 40.6
C07p29370 Brassica napus HOM05D001192 ORTHO05D002290 8.1e-06 55.1 47 46.8
Cc02_g13950 Coffea canephora HOM05D040560 ORTHO05D010160 8.1e-06 55.1 58 46.6


User provided reference genes

Program Settings