Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 7.0e-87 323.9 166 100.0
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 1.2e-30 137.1 158 55.7
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 6.0e-30 134.8 165 53.3
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 3.0e-29 132.5 157 51.6
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 2.5e-28 129.4 164 52.4
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 4.3e-28 128.6 173 49.1
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 8.2e-27 124.4 168 50.0
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.4e-26 122.9 168 50.0
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.1e-26 122.5 168 50.0
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.1e-26 122.5 168 50.0
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 4.0e-26 122.1 164 52.4
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 9.0e-26 120.9 168 48.8
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 1.5e-25 120.2 158 52.5
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 1.5e-25 120.2 158 52.5
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 2.0e-25 119.8 186 47.3
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 2.6e-25 119.4 161 51.6
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 4.5e-25 118.6 157 51.6
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 7.6e-25 117.9 151 51.7
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 1.3e-24 117.1 167 52.7
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 1.3e-24 117.1 170 47.6
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 1.3e-24 117.1 172 45.9
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 1.7e-24 116.7 172 48.3
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.7e-24 116.7 171 46.2
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.7e-24 116.7 171 46.2
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 6.5e-24 114.8 166 48.2
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 6.5e-24 114.8 157 48.4
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 6.5e-24 114.8 171 45.6
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 6.5e-24 114.8 168 47.6
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 1.4e-23 113.6 166 47.6
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 3.2e-23 112.5 162 46.9
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 3.2e-23 112.5 168 45.8
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 7.1e-23 111.3 166 47.6
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 7.1e-23 111.3 165 50.9
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 1.6e-22 110.2 163 48.5
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.6e-22 110.2 164 43.3
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 1.6e-22 110.2 157 47.8
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 2.1e-22 109.8 153 49.0
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 4.6e-22 108.6 163 47.9
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.0e-21 107.5 166 44.6
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.0e-21 107.5 166 44.6
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 1.0e-21 107.5 165 47.9
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 1.8e-21 106.7 175 48.0
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 2.3e-21 106.3 164 49.4
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 3.0e-21 105.9 152 48.0
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 3.9e-21 105.5 163 42.9
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 6.7e-21 104.8 165 44.2
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 1.1e-20 104.0 165 47.3
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 1.1e-20 104.0 165 47.3
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 1.1e-20 104.0 171 46.2
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.1e-20 104.0 167 45.5
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.5e-20 103.6 158 46.2
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.5e-20 103.6 158 46.2
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 1.5e-20 103.6 165 47.3
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 1.9e-20 103.2 156 45.5
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 5.7e-20 101.7 168 41.7
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 9.7e-20 100.9 182 42.9
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 1.3e-19 100.5 157 46.5
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 1.3e-19 100.5 104 61.5
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 1.6e-19 100.1 165 45.5
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 2.8e-19 99.4 182 42.3
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 2.8e-19 99.4 149 49.0
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 2.8e-19 99.4 177 40.7
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 6.3e-19 98.2 164 43.3
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 8.2e-19 97.8 166 45.2
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 1.1e-18 97.4 186 39.2
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 1.1e-18 97.4 170 44.7
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 1.8e-18 96.7 180 42.8
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 1.8e-18 96.7 176 45.5
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 4.1e-18 95.5 168 44.0
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 4.1e-18 95.5 165 43.0
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 5.3e-18 95.1 184 39.7
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 5.3e-18 95.1 184 39.7
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 6.9e-18 94.7 165 43.6
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 1.2e-17 94.0 184 40.8
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 1.2e-17 94.0 144 47.2
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 1.5e-17 93.6 187 39.6
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 1.5e-17 93.6 189 41.8
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.5e-17 93.6 169 43.2
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 1.5e-17 93.6 144 50.0
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 2.6e-17 92.8 175 42.3
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 2.6e-17 92.8 170 45.9
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 4.5e-17 92.0 184 41.8
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 4.5e-17 92.0 169 40.2
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 4.5e-17 92.0 148 43.2
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 4.5e-17 92.0 156 42.3
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 1.7e-16 90.1 187 39.0
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 1.7e-16 90.1 156 44.9
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 1.7e-16 90.1 137 44.5
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 2.2e-16 89.7 183 39.3
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 3.8e-16 89.0 176 42.6
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 5.0e-16 88.6 159 40.3
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 1.1e-15 87.4 169 43.8
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 3.2e-15 85.9 188 38.8
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 3.2e-15 85.9 170 39.4
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 4.2e-15 85.5 164 42.1
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 9.4e-15 84.3 174 38.5
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 9.4e-15 84.3 164 40.2
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 1.2e-14 84.0 178 38.8
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 4.6e-14 82.0 183 39.3
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 6.1e-14 81.6 137 44.5
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 7.9e-14 81.3 166 36.1
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 1.0e-13 80.9 159 40.3
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 1.0e-13 80.9 157 36.3
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 3.9e-13 79.0 183 40.4
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.1e-12 77.4 157 38.9
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 2.0e-12 76.6 159 42.8
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 2.0e-12 76.6 162 40.1
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 2.5e-12 76.3 158 42.4
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 2.5e-12 76.3 158 42.4
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 2.5e-12 76.3 157 43.3
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 2.5e-12 76.3 161 39.1
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 3.3e-12 75.9 178 41.0
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 4.3e-12 75.5 164 38.4
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 4.3e-12 75.5 178 37.1
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 9.7e-12 74.3 159 42.1
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 1.3e-11 73.9 195 42.1
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 1.3e-11 73.9 180 36.1
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.8e-11 72.8 71 70.4
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.8e-11 72.8 127 44.9
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 2.8e-11 72.8 127 44.9
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 3.7e-11 72.4 175 37.7
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 4.8e-11 72.0 155 42.6
Rhsim02G0241600 Rhododendron simsii HOM05D000089 ORTHO05D005903 8.2e-11 71.2 152 41.4
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.4e-10 70.5 162 42.0
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.8e-10 70.1 127 41.7
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 4.1e-10 68.9 90 47.8
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 1.5e-09 67.0 86 48.8
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 2.0e-09 66.6 115 40.0
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 2.6e-09 66.2 87 47.1
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 1.0e-08 64.3 154 41.6
CSS0044713 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.3e-08 63.9 155 37.4
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.2e-08 63.2 127 39.4
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.2e-08 63.2 127 39.4
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.2e-08 63.2 127 39.4
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 2.9e-08 62.8 49 65.3
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.5e-07 59.7 89 42.7
MBI03_g22788_MAGBIO Magnolia biondii HOM05D007999 ORTHO05D000248 9.4e-07 57.8 83 45.8
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 1.6e-06 57.0 164 35.4
CSS0015607 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.7e-06 56.2 99 45.5
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 6.1e-06 55.1 156 34.6
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 6.1e-06 55.1 156 34.6


User provided reference genes

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