Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0230500 Rhododendron simsii HOM05D000448 ORTHO05D000291 9.9e-107 390.2 206 100.0
Rhsim02G0219200 Rhododendron simsii HOM05D000448 ORTHO05D000291 9.2e-28 127.9 134 53.7
Rhsim02G0230700 Rhododendron simsii HOM05D000448 ORTHO05D000291 1.0e-23 114.4 95 63.2
Rhsim02G0230600 Rhododendron simsii HOM05D000448 ORTHO05D000291 2.2e-21 106.7 87 69.0
vmacro17436 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 7.8e-19 98.2 160 47.5
Rhsim03G0059800 Rhododendron simsii HOM05D000448 ORTHO05D000291 3.1e-15 86.3 103 46.6
Rhsim11G0060000 Rhododendron simsii HOM05D000448 ORTHO05D000291 8.9e-15 84.7 103 49.5
Rhsim12G0208300 Rhododendron simsii HOM05D001920 ORTHO05D004895 1.5e-14 84.0 89 64.0
Rhsim11G0059900 Rhododendron simsii HOM05D000448 ORTHO05D000291 2.6e-14 83.2 98 53.1
Rhsim02G0103800 Rhododendron simsii HOM05D000448 ORTHO05D000291 3.4e-14 82.8 102 46.1
AUR62009246 Chenopodium quinoa HOM05D000448 ORTHO05D000291 7.5e-14 81.6 111 43.2
Actinidia26039 Actinidia chinensis HOM05D000448 ORTHO05D000291 2.9e-13 79.7 81 55.6
HanXRQChr16g0523041 Helianthus annuus HOM05D000448 ORTHO05D000291 4.9e-13 79.0 94 46.8
vmacro17041 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 6.4e-13 78.6 58 70.7
Rhsim12G0208400 Rhododendron simsii HOM05D001920 ORTHO05D000291 7.0e-12 75.1 58 67.2
Rhsim12G0208500 Rhododendron simsii HOM05D000448 ORTHO05D000291 7.0e-12 75.1 58 67.2
Rhsim03G0061300 Rhododendron simsii HOM05D000448 ORTHO05D000291 9.2e-12 74.7 118 39.8
RcHm_v2.0_Chr1g0342341 Rosa chinensis HOM05D000448 ORTHO05D000291 6.0e-11 72.0 96 46.9
Rhsim03G0061100 Rhododendron simsii HOM05D000448 ORTHO05D000291 3.0e-10 69.7 94 39.4
vmacro10494 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 3.9e-10 69.3 58 63.8
HanXRQChr16g0523061 Helianthus annuus HOM05D000448 ORTHO05D000291 5.0e-10 68.9 94 40.4
Actinidia25703 Actinidia chinensis HOM05D000448 ORTHO05D000291 6.6e-10 68.6 83 49.4
CANSAT25G3158 Cannabis sativa HOM05D000448 ORTHO05D000291 1.5e-09 67.4 85 42.4
Eucgr.L00448 Eucalyptus grandis HOM05D000448 ORTHO05D000291 2.5e-09 66.6 109 39.4
MBI14_g39030_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000313 4.3e-09 65.9 96 38.5
Manes.10G125451 Manihot esculenta HOM05D000448 ORTHO05D000291 4.3e-09 65.9 125 33.6
Manes.10G125600 Manihot esculenta HOM05D000448 ORTHO05D000291 5.6e-09 65.5 81 45.7
Cpa.g.sc277.5 Carica papaya HOM05D000448 ORTHO05D000291 7.3e-09 65.1 94 38.3
Rhsim03G0060400 Rhododendron simsii HOM05D000448 ORTHO05D000291 9.5e-09 64.7 94 37.2
Rhsim03G0060700 Rhododendron simsii HOM05D000448 ORTHO05D000291 9.5e-09 64.7 94 37.2
RhsimUnG0057600 Rhododendron simsii HOM05D000448 ORTHO05D000291 9.5e-09 64.7 94 37.2
RhsimUnG0057700 Rhododendron simsii HOM05D000448 ORTHO05D000291 9.5e-09 64.7 116 36.2
TAR383G0315 Trochodendron aralioides HOM05D000448 ORTHO05D000291 1.6e-08 63.9 88 56.8
Dinv37881 Davidia involucrata HOM05D000448 ORTHO05D000291 2.1e-08 63.5 54 61.1
PSO782G5375 Papaver somniferum HOM05D000480 ORTHO05D000313 3.6e-08 62.8 93 39.8
Cpa.g.sc277.6 Carica papaya HOM05D000448 ORTHO05D000291 4.7e-08 62.4 96 37.5
TAR121G0002 Trochodendron aralioides HOM05D000448 ORTHO05D000291 6.2e-08 62.0 53 62.3
Actinidia03310 Actinidia chinensis HOM05D000448 ORTHO05D000291 8.1e-08 61.6 96 42.7
Lsat_1_v5_gn_5_30860 Lactuca sativa HOM05D000448 ORTHO05D000291 8.1e-08 61.6 90 50.0
Cfa013308 Carpinus fangiana HOM05D000448 ORTHO05D000291 1.1e-07 61.2 93 40.9
AUR62009250 Chenopodium quinoa HOM05D000448 ORTHO05D000291 1.1e-07 61.2 94 40.4
HanXRQChr02g0058091 Helianthus annuus HOM05D000448 ORTHO05D000291 1.1e-07 61.2 197 39.1
Migut.C00513 Erythranthe guttata HOM05D000448 ORTHO05D000291 1.4e-07 60.8 93 40.9
Hma1.2p1_0672F.1_g200820 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 1.4e-07 60.8 89 39.3
Manes.10G126666 Manihot esculenta HOM05D000448 ORTHO05D000291 1.8e-07 60.5 94 40.4
Manes.10G127332 Manihot esculenta HOM05D000448 ORTHO05D000291 1.8e-07 60.5 94 40.4
PSO063G6971 Papaver somniferum HOM05D000480 ORTHO05D000313 1.8e-07 60.5 93 38.7
Rhsim03G0061600 Rhododendron simsii HOM05D003997 ORTHO05D002698 1.8e-07 60.5 59 55.9
RhsimUnG0112900 Rhododendron simsii HOM05D003997 ORTHO05D002698 1.8e-07 60.5 60 55.0
TAR501G0001 Trochodendron aralioides HOM05D000448 ORTHO05D000291 1.8e-07 60.5 58 56.9
Lsat_1_v5_gn_5_31161 Lactuca sativa HOM05D000448 ORTHO05D000291 2.3e-07 60.1 91 46.2
PSO170G3744 Papaver somniferum HOM05D000448 ORTHO05D000291 2.3e-07 60.1 94 38.3
AUR62009254 Chenopodium quinoa HOM05D000480 ORTHO05D000313 3.1e-07 59.7 182 24.7
AUR62043845 Chenopodium quinoa HOM05D000448 ORTHO05D000291 4.0e-07 59.3 182 24.7
Haze_18776 Corylus avellana HOM05D000448 ORTHO05D000291 4.0e-07 59.3 113 38.1
Lsat_1_v5_gn_5_29481 Lactuca sativa HOM05D000448 ORTHO05D000291 4.0e-07 59.3 81 45.7
CSS0023638 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 5.2e-07 58.9 94 42.6
CsaV3_2G016990 Cucumis sativus L. HOM05D000448 ORTHO05D000291 5.2e-07 58.9 143 26.6
PSO302G0297 Papaver somniferum HOM05D000448 ORTHO05D000291 5.2e-07 58.9 94 37.2
vmacro03790 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 6.8e-07 58.5 92 39.1
ECA248G3007 Erigeron canadensis HOM05D000448 ORTHO05D000291 8.9e-07 58.2 93 41.9
Nn8g41108 Nelumbo nucifera HOM05D000448 ORTHO05D000291 8.9e-07 58.2 96 39.6
CSS0043523 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 1.2e-06 57.8 64 56.2
Lj1A655T54 Lonicera japonica HOM05D000448 ORTHO05D000291 1.2e-06 57.8 65 50.8
MBI14_g40986_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 1.2e-06 57.8 215 30.2
CSS0031680 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 1.5e-06 57.4 185 33.5
CANSAT25G2306 Cannabis sativa HOM05D000448 ORTHO05D000291 1.5e-06 57.4 87 44.8
CiPaw.14G019200 Carya illinoinensis HOM05D000480 ORTHO05D000313 2.0e-06 57.0 98 34.7
ECA248G1701 Erigeron canadensis HOM05D000448 ORTHO05D000291 2.0e-06 57.0 93 40.9
Eucgr.C03572 Eucalyptus grandis HOM05D000448 ORTHO05D000291 2.0e-06 57.0 93 40.9
Glyma.13G202000 Glycine max HOM05D000448 ORTHO05D000291 2.0e-06 57.0 64 43.8
Manes.10G128051 Manihot esculenta HOM05D000448 ORTHO05D000291 2.0e-06 57.0 80 42.5
Hund18695 Selenicereus undatus HOM05D000448 ORTHO05D000291 2.0e-06 57.0 54 51.9
CiPaw.14G018700 Carya illinoinensis HOM05D000480 ORTHO05D000313 2.6e-06 56.6 88 35.2
AUR62008891 Chenopodium quinoa HOM05D000448 ORTHO05D000291 2.6e-06 56.6 202 30.2
AUR62043768 Chenopodium quinoa HOM05D000448 ORTHO05D000313 2.6e-06 56.6 122 32.0
AUR62043849 Chenopodium quinoa HOM05D000448 ORTHO05D000291 2.6e-06 56.6 91 51.6
Manes.10G125400 Manihot esculenta HOM05D000448 ORTHO05D000291 2.6e-06 56.6 81 42.0
vmacro20893 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 2.6e-06 56.6 54 55.6
GSVIVG01015132001 Vitis vinifera HOM05D000448 ORTHO05D000291 2.6e-06 56.6 96 40.6
Cfa019716 Carpinus fangiana HOM05D000448 ORTHO05D000291 3.4e-06 56.2 65 43.1
PSO478G0673 Papaver somniferum HOM05D000448 ORTHO05D000291 3.4e-06 56.2 55 45.5
Rhsim03G0061000 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.4e-06 56.2 97 48.5
GSVIVG01015127001 Vitis vinifera HOM05D006721 ORTHO05D000476 3.4e-06 56.2 67 49.3
AUR62043868 Chenopodium quinoa HOM05D000448 ORTHO05D000291 4.4e-06 55.8 91 51.6
Actinidia27564 Actinidia chinensis HOM05D000448 ORTHO05D000291 5.8e-06 55.5 52 59.6
CSS0035404 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 5.8e-06 55.5 56 53.6
CSS0038637 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 5.8e-06 55.5 56 53.6
MELO3C013066.2 Cucumis melo HOM05D000448 ORTHO05D000291 5.8e-06 55.5 102 28.4
COL.COLO4_30786 Corchorus olitorius HOM05D000448 ORTHO05D000291 7.5e-06 55.1 61 54.1
Haze_09282 Corylus avellana HOM05D000448 ORTHO05D000291 7.5e-06 55.1 144 39.6
Rhsim03G0060500 Rhododendron simsii HOM05D000448 ORTHO05D000291 7.5e-06 55.1 54 59.3
Rhsim03G0060800 Rhododendron simsii HOM05D000448 ORTHO05D000291 7.5e-06 55.1 54 59.3
Lsat_1_v5_gn_5_29501 Lactuca sativa HOM05D000448 ORTHO05D000291 9.9e-06 54.7 81 45.7
Lj4A285G23 Lonicera japonica HOM05D000448 ORTHO05D000291 9.9e-06 54.7 54 50.0
Lj4A286T20 Lonicera japonica HOM05D000448 ORTHO05D000291 9.9e-06 54.7 54 50.0


User provided reference genes

Program Settings