Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.9e-129 465.3 245 100.0
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.3e-84 317.0 286 67.1
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 2.0e-58 229.9 267 55.8
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.0e-57 227.6 281 52.0
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.2e-56 222.6 281 51.2
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 1.2e-55 220.7 274 50.7
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 5.2e-54 215.3 280 48.6
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 6.6e-49 198.4 268 49.6
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 1.5e-48 197.2 282 46.5
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 2.3e-46 189.9 280 46.8
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.6e-45 186.4 281 47.3
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 1.1e-43 181.0 281 43.4
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 1.4e-43 180.6 280 42.5
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 5.9e-42 175.3 274 43.8
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.3e-41 174.1 172 62.8
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 4.3e-40 169.1 299 40.1
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 7.3e-40 168.3 256 45.3
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.2e-39 167.5 300 40.0
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 4.7e-39 165.6 288 42.7
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.3e-38 163.3 291 37.8
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 6.8e-38 161.8 281 42.3
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 6.8e-38 161.8 371 36.4
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 8.9e-38 161.4 281 39.9
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.2e-37 161.0 281 38.4
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 7.5e-37 158.3 355 36.6
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 9.8e-37 157.9 297 37.4
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 1.3e-36 157.5 370 35.9
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 1.3e-36 157.5 325 37.2
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.3e-36 157.5 276 41.7
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 1.7e-36 157.1 302 41.7
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 2.2e-36 156.8 306 38.6
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 2.9e-36 156.4 281 42.7
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 6.4e-36 155.2 264 43.2
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 1.4e-35 154.1 260 41.9
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 1.6e-34 150.6 279 42.3
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 3.5e-34 149.4 320 38.1
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 6.0e-34 148.7 281 36.7
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 7.8e-34 148.3 290 40.0
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.0e-33 146.4 327 38.5
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 3.0e-33 146.4 288 39.6
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.1e-32 144.4 128 60.2
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.1e-32 144.4 128 60.2
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 1.1e-32 144.4 306 39.2
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 1.5e-32 144.1 264 40.5
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 3.3e-32 142.9 277 40.1
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 7.3e-32 141.7 278 39.9
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 9.5e-32 141.4 272 40.4
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 1.6e-31 140.6 277 40.1
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 2.1e-31 140.2 280 38.6
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 3.6e-31 139.4 280 37.1
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 4.7e-31 139.0 259 42.1
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 4.7e-31 139.0 325 38.8
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 8.1e-31 138.3 250 42.0
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.1e-30 137.9 276 36.2
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 1.1e-30 137.9 283 40.6
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 3.1e-30 136.3 269 39.4
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 4.0e-30 136.0 305 36.4
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 4.0e-30 136.0 359 34.3
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 5.2e-30 135.6 283 39.6
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 6.8e-30 135.2 277 39.0
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 1.2e-29 134.4 283 37.8
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.0e-29 133.7 335 36.4
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 3.4e-29 132.9 315 34.9
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 3.4e-29 132.9 358 33.5
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 7.5e-29 131.7 280 38.6
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 1.3e-28 131.0 292 35.3
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 4.9e-28 129.0 280 35.4
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 4.9e-28 129.0 252 40.5
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 6.4e-28 128.6 316 35.4
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 6.4e-28 128.6 242 41.7
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 6.4e-28 128.6 275 38.2
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.9e-27 127.1 276 35.5
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 1.9e-27 127.1 385 31.2
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 1.9e-27 127.1 272 36.8
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 2.1e-26 123.6 329 33.7
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 2.1e-26 123.6 280 38.6
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 2.1e-26 123.6 359 33.4
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.6e-26 122.5 276 34.4
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 4.6e-26 122.5 279 36.6
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 7.8e-26 121.7 279 36.9
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 7.8e-26 121.7 274 35.4
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.0e-25 121.3 129 54.3
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 3.9e-25 119.4 336 32.4
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 3.9e-25 119.4 276 38.4
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.9e-25 119.4 129 54.3
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 6.6e-25 118.6 315 34.0
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 8.6e-25 118.2 284 35.2
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.3e-24 116.3 272 34.2
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 4.3e-24 115.9 131 47.3
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 4.3e-24 115.9 250 37.6
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 5.6e-24 115.5 283 33.2
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 7.3e-24 115.2 283 34.3
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 7.3e-24 115.2 384 31.2
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 9.5e-24 114.8 130 50.8
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 1.2e-23 114.4 270 33.3
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 2.8e-23 113.2 279 35.5
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 2.8e-23 113.2 275 34.9
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 3.6e-23 112.8 335 31.3
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 8.1e-23 111.7 281 33.1
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.1e-22 111.3 260 34.2
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.4e-22 110.2 100 52.0
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 2.4e-22 110.2 307 33.9
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 1.2e-21 107.8 250 35.6
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 1.5e-21 107.5 127 48.0
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 7.6e-21 105.1 281 33.8
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 1.3e-20 104.4 133 47.4
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 2.2e-20 103.6 342 29.8
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 2.9e-20 103.2 317 32.5
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 1.9e-19 100.5 203 36.9
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 2.4e-19 100.1 132 43.2
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 3.2e-19 99.8 339 30.4
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 4.1e-19 99.4 196 38.8
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 1.6e-18 97.4 339 30.7
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 7.8e-18 95.1 124 42.7
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 1.3e-17 94.4 128 44.5
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.7e-17 94.0 102 45.1
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 1.7e-17 94.0 252 35.3
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 5.1e-17 92.4 259 32.4
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 5.1e-17 92.4 251 32.3
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 6.6e-17 92.0 248 33.1
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 2.5e-16 90.1 129 42.6
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 3.3e-16 89.7 261 31.4
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.6e-15 87.4 93 53.8
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 3.6e-15 86.3 249 34.5
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 6.2e-15 85.5 254 35.0
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 8.1e-15 85.1 238 35.7
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 3.1e-14 83.2 244 34.4
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 3.1e-14 83.2 244 34.4
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 6.9e-14 82.0 148 41.2
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 9.0e-14 81.6 279 32.3
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 1.5e-13 80.9 243 35.0
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 7.6e-13 78.6 110 42.7
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 7.6e-13 78.6 234 33.3
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 7.6e-13 78.6 234 33.3
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 1.7e-12 77.4 222 34.2
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 1.7e-12 77.4 209 34.0
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 3.8e-12 76.3 240 32.1
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 4.9e-12 75.9 333 30.0
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 4.9e-12 75.9 235 34.5
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 1.1e-11 74.7 233 34.3
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 4.2e-11 72.8 241 31.5
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 4.2e-11 72.8 244 35.2
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 5.4e-11 72.4 75 56.0
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 9.3e-11 71.6 59 57.6
Nitab4.5_0001315g0090 Nicotiana tabacum HOM05D004296 ORTHO05D005045 9.3e-11 71.6 83 56.6
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 1.6e-10 70.9 219 32.0
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 2.7e-10 70.1 211 30.3
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 7.8e-10 68.6 212 32.5
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 1.3e-09 67.8 134 38.8
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 2.3e-09 67.0 246 30.1
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 3.9e-09 66.2 210 31.9
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 5.6e-08 62.4 128 35.9
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 9.6e-08 61.6 99 42.4
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 1.8e-06 57.4 84 42.9


User provided reference genes

Program Settings