Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0217600 Rhododendron simsii HOM05D007019 ORTHO05D008398 2.8e-264 914.8 498 100.0
CSS0016918 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 2.2e-200 702.6 498 75.5
CSS0023374 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 2.2e-200 702.6 498 75.5
Actinidia14141 Actinidia chinensis HOM05D007019 ORTHO05D008398 6.3e-192 674.5 499 73.3
Hma1.2p1_0737F.1_g210790 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 2.7e-190 669.1 504 72.2
CiPaw.07G232900 Carya illinoinensis HOM05D007019 ORTHO05D008398 5.0e-189 664.8 496 71.4
Cfa013011 Carpinus fangiana HOM05D007019 ORTHO05D008398 1.5e-188 663.3 497 71.8
Eucgr.C04032 Eucalyptus grandis HOM05D007019 ORTHO05D008398 9.5e-188 660.6 498 69.5
Manes.16G132200 Manihot esculenta HOM05D007019 ORTHO05D008398 2.8e-187 659.1 494 70.9
Lj7A737G40 Lonicera japonica HOM05D007019 ORTHO05D008398 2.3e-186 656.0 507 69.0
Prupe.1G396900 Prunus persica HOM05D007019 ORTHO05D008398 1.2e-185 653.7 497 71.2
QL02p018053 Quercus lobata HOM05D007019 ORTHO05D008398 1.9e-183 646.4 495 69.5
Atru.chr7.2574 Acer truncatum HOM05D007019 ORTHO05D008398 3.2e-183 645.6 499 68.5
DCAR_003030 Daucus carota HOM05D007019 ORTHO05D008398 7.8e-182 641.0 500 68.0
Gorai.009G064200 Gossypium raimondii HOM05D007019 ORTHO05D008398 4.3e-180 635.2 501 69.9
Thecc.09G013400 Theobroma cacao HOM05D007019 ORTHO05D008398 1.6e-179 633.3 502 69.1
Duzib168G1437 Durio zibethinus HOM05D007019 ORTHO05D008398 1.4e-178 630.2 504 69.2
Cc00_g05220 Coffea canephora HOM05D007019 ORTHO05D008398 1.8e-178 629.8 499 67.9
FvH4_2g41350 Fragaria vesca HOM05D007019 ORTHO05D008398 4.0e-178 628.6 495 67.5
Potri.018G016200 Populus trichocarpa HOM05D007019 ORTHO05D008398 5.2e-178 628.2 498 67.1
CANSAT25G0065 Cannabis sativa HOM05D007019 ORTHO05D008398 3.7e-176 622.1 496 66.1
Nn6g33490 Nelumbo nucifera HOM05D007019 ORTHO05D008398 3.5e-174 615.5 510 68.2
TWI32G0429 Tripterygium wilfordii HOM05D007019 ORTHO05D008398 3.5e-174 615.5 493 65.1
PGR044G2245 Punica granatum HOM05D007019 ORTHO05D008398 6.0e-174 614.8 498 66.3
vmacro11274 Vaccinium macrocarpon HOM05D007019 ORTHO05D008398 6.0e-174 614.8 501 70.5
Lj6g0025581 Lotus japonicus HOM05D007019 ORTHO05D008398 1.0e-173 614.0 497 65.6
RcHm_v2.0_Chr6g0299181 Rosa chinensis HOM05D007019 ORTHO05D008398 1.0e-173 614.0 496 68.5
MBI14_g16432_MAGBIO Magnolia biondii HOM05D007019 ORTHO05D008398 1.7e-173 613.2 510 67.6
arahy.Tifrunner.gnm1.ann1.MG10WM Arachis hypogaea HOM05D007019 ORTHO05D008398 5.1e-173 611.7 495 65.3
MSTRG.1627 Avicennia marina HOM05D007019 ORTHO05D008398 6.6e-173 611.3 500 66.8
COL.COLO4_18972 Corchorus olitorius HOM05D007019 ORTHO05D008398 1.1e-172 610.5 503 67.4
arahy.Tifrunner.gnm1.ann1.SS16UG Arachis hypogaea HOM05D007019 ORTHO05D008398 4.3e-172 608.6 495 64.6
Gohir.D05G063200 Gossypium hirsutum HOM05D007019 ORTHO05D008398 7.3e-172 607.8 501 67.5
Glyma.18G091000 Glycine max HOM05D007019 ORTHO05D008398 9.5e-172 607.4 496 66.5
Psat5g174160 Pisum sativum HOM05D007019 ORTHO05D008398 2.8e-171 605.9 497 63.8
Aqoxy7G03288 Aquilegia oxysepala HOM05D007019 ORTHO05D008398 6.2e-171 604.7 496 66.3
Lalb_Chr15g0081591 Lupinus albus HOM05D007019 ORTHO05D008398 6.2e-171 604.7 496 66.7
Ciclev10008089m.g Citrus clementina HOM05D007019 ORTHO05D008398 8.1e-171 604.4 500 65.4
Medtr3g053700 Medicago truncatula HOM05D007019 ORTHO05D008398 8.1e-171 604.4 495 64.6
Gohir.A05G061000 Gossypium hirsutum HOM05D007019 ORTHO05D008398 5.2e-170 601.7 501 67.3
Solyc08g068820.3 Solanum lycopersicum HOM05D007019 ORTHO05D008398 8.9e-170 600.9 499 65.1
PGSC0003DMG400014784 Solanum tuberosum HOM05D007019 ORTHO05D008398 3.4e-169 599.0 499 64.3
Glyma.08G321000 Glycine max HOM05D007019 ORTHO05D008398 1.7e-168 596.7 506 63.6
FAN27G2994 Fragaria x ananassa HOM05D007019 ORTHO05D008398 4.9e-168 595.1 489 65.6
Oeu021907.1 Olea europaea HOM05D007019 ORTHO05D008398 4.9e-168 595.1 499 63.7
ClCG08G013800 Citrullus lanatus HOM05D007019 ORTHO05D008398 3.9e-165 585.5 496 65.7
Migut.E01445 Erythranthe guttata HOM05D007019 ORTHO05D008398 5.1e-165 585.1 501 62.7
MELO3C011312.2 Cucumis melo HOM05D007019 ORTHO05D008398 1.1e-164 583.9 496 65.5
Sabra18G0019700 Salix brachista HOM05D007019 ORTHO05D008398 1.1e-164 583.9 527 61.5
VMungo0540G1233 Vigna mungo HOM05D007019 ORTHO05D008398 9.6e-164 580.9 497 64.0
Hund25606 Selenicereus undatus HOM05D007019 ORTHO05D008398 6.2e-163 578.2 519 61.3
TPR.G32253 Trifolium pratense HOM05D007019 ORTHO05D008398 6.2e-163 578.2 497 63.0
HanXRQChr03g0084841 Helianthus annuus HOM05D007019 ORTHO05D008398 8.1e-163 577.8 525 62.1
CsaV3_2G032590 Cucumis sativus L. HOM05D007019 ORTHO05D008398 1.4e-162 577.0 496 64.7
Phvul.006G047900 Phaseolus vulgaris HOM05D007019 ORTHO05D008398 5.2e-162 575.1 497 63.2
unitig_46.g18223 Utricularia gibba HOM05D007019 ORTHO05D008398 1.7e-160 570.1 499 60.5
Ca_26389_v3 Cicer arietinum L. HOM05D007019 ORTHO05D008398 2.2e-160 569.7 496 63.1
Sed0002524 Sechium edule HOM05D007019 ORTHO05D008398 8.4e-160 567.8 502 62.7
CAN.G273.24 Capsicum annuum HOM05D007019 ORTHO05D008398 3.2e-159 565.8 496 61.5
Sc23g0006120 Simmondsia chinensis HOM05D007019 ORTHO05D008398 1.0e-157 560.8 514 64.6
FAN15G0718 Fragaria x ananassa HOM05D007019 ORTHO05D008398 6.6e-157 558.1 516 61.4
Lsat_1_v5_gn_6_78060 Lactuca sativa HOM05D007019 ORTHO05D008398 1.3e-155 553.9 510 64.3
PSO731G0070 Papaver somniferum HOM05D007019 ORTHO05D008398 1.6e-155 553.5 508 59.1
ECA240G4302 Erigeron canadensis HOM05D007019 ORTHO05D008398 3.6e-155 552.4 521 60.5
PSO210G0129 Papaver somniferum HOM05D007019 ORTHO05D008398 4.8e-155 552.0 514 60.9
Cpa.g.sc148.46 Carica papaya HOM05D007019 ORTHO05D008398 3.1e-154 549.3 499 62.9
EL10Ac2g02454 Beta vulgaris HOM05D007019 ORTHO05D008398 2.6e-153 546.2 547 56.1
ATR0580G102 Amborella trichopoda HOM05D007019 ORTHO05D008398 1.3e-152 543.9 510 58.6
SGA_v2.0_scaffold169G38600 Striga asiatica HOM05D007019 ORTHO05D008398 3.8e-152 542.3 512 61.3
Sp4g03850 Schrenkiella parvula HOM05D007019 ORTHO05D008398 1.0e-149 534.3 506 57.7
CDE04G0815 Ceratophyllum demersum HOM05D007019 ORTHO05D008398 1.3e-149 533.9 510 57.8
THA.LOC104819948 Tarenaya hassleriana HOM05D007019 ORTHO05D008398 6.6e-149 531.6 514 56.8
Aa31LG7G11570 Aethionema arabicum HOM05D007019 ORTHO05D008398 2.5e-148 529.6 505 59.6
Nitab4.5_0000406g0110 Nicotiana tabacum HOM05D007019 ORTHO05D008398 2.1e-147 526.6 499 58.7
Carub.0004s0445 Capsella rubella HOM05D007019 ORTHO05D008398 2.0e-145 520.0 506 56.9
Zm00001eb257650 Zea mays HOM05D007019 ORTHO05D008398 7.6e-145 518.1 504 58.7
Thhalv10000137m.g Eutrema salsugineum HOM05D007019 ORTHO05D008398 2.2e-144 516.5 509 58.3
AT2G24830 Arabidopsis thaliana HOM05D007019 ORTHO05D008398 8.4e-144 514.6 510 57.1
CARHR294580 Cardamine hirsuta HOM05D007019 ORTHO05D008398 6.0e-142 508.4 510 56.3
AUR62032443 Chenopodium quinoa HOM05D007019 ORTHO05D008398 2.3e-141 506.5 526 55.7
HPP92_010745 Vanilla planifolia HOM05D007019 ORTHO05D008398 2.3e-141 506.5 516 55.4
A09p56090 Brassica napus HOM05D007019 ORTHO05D008398 3.3e-140 502.7 505 60.2
AUR62024776 Chenopodium quinoa HOM05D007019 ORTHO05D008398 3.3e-140 502.7 544 56.1
Nitab4.5_0012106g0030 Nicotiana tabacum HOM05D007019 ORTHO05D008398 7.4e-140 501.5 499 58.1
BraA09t41004Z Brassica rapa HOM05D007019 ORTHO05D008398 1.3e-139 500.7 506 59.1
A09p56030 Brassica napus HOM05D007019 ORTHO05D008398 2.4e-138 496.5 503 56.9
Sopen08g022560 Solanum pennellii HOM05D007019 ORTHO05D008398 2.4e-138 496.5 399 62.9
BolC8t51475H Brassica oleracea HOM05D007019 ORTHO05D008398 6.5e-136 488.4 509 58.3
C08p39020 Brassica napus HOM05D007019 ORTHO05D008398 1.1e-135 487.6 509 58.3
AL4G15870 Arabidopsis lyrata HOM05D007019 ORTHO05D008398 2.1e-134 483.4 505 54.5
Dinv03401 Davidia involucrata HOM05D007019 ORTHO05D008398 1.4e-130 470.7 364 75.0
BcaC07g40903 Brassica carinata HOM05D007019 ORTHO05D008398 1.5e-129 467.2 499 56.7
SEGI_04420 Sequoiadendron giganteum HOM05D007019 ORTHO05D008398 4.5e-129 465.7 510 53.9
MD08G1051900 Malus domestica HOM05D007019 ORTHO05D008398 1.6e-126 457.2 359 71.9
TAR636G0280 Trochodendron aralioides HOM05D007019 ORTHO05D008398 1.6e-126 457.2 342 67.8
Hma1.2p1_0737F.1_g210800 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 2.5e-116 423.3 332 70.8
Mapoly0067s0020 Marchantia polymorpha HOM05D007019 ORTHO05D008398 5.7e-108 395.6 513 48.1
Pp3c21_5730 Physcomitrium patens HOM05D007019 ORTHO05D008398 1.0e-104 384.8 513 44.8
SMO116G0382 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 2.8e-99 366.7 499 47.7
Dinv10229 Davidia involucrata HOM05D007019 ORTHO05D008398 1.1e-95 354.8 353 62.6
SHI21092 Sapria himalayana HOM05D007019 ORTHO05D008398 1.4e-90 337.8 577 39.3
GSVIVG01036005001 Vitis vinifera HOM05D007019 ORTHO05D008398 4.7e-78 296.2 186 77.4
AagrBONN_evm.TU.Sc2ySwM_117.1463 Anthoceros agrestis HOM05D007019 ORTHO05D008398 4.1e-66 256.5 360 49.2
CBR_g30106 Chara braunii HOM05D007019 ORTHO05D008398 8.3e-59 232.3 564 36.0
Peaxi162Scf01419g00115 Petunia axillaris HOM05D007019 ORTHO05D008398 9.3e-42 175.6 142 61.3
SalBow6G1623 Salvia bowleyana HOM05D007019 ORTHO05D008398 9.6e-39 165.6 190 48.9
SMO116G0105 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 1.1e-31 142.1 324 35.2
Os02g0793000 Oryza sativa ssp. japonica HOM05D007019 ORTHO05D008398 2.0e-28 131.3 108 59.3
SMO269G0003 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 1.9e-23 114.8 359 31.8
AagrBONN_evm.TU.Sc2ySwM_117.1462 Anthoceros agrestis HOM05D007019 ORTHO05D008398 2.1e-22 111.3 150 44.0
CSS0028433 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 3.3e-07 60.8 77 42.9
Nitab4.5_0001151g0100 Nicotiana tabacum HOM05D004574 ORTHO05D005612 3.3e-07 60.8 81 39.5
Lsat_1_v5_gn_5_90461 Lactuca sativa HOM05D004574 ORTHO05D005612 5.7e-07 60.1 49 57.1
Cre07.g355700 Chlamydomonas reinhardtii HOM05D007019 ORTHO05D008398 7.4e-07 59.7 260 28.1
MD15G1158500 Malus domestica HOM05D004574 ORTHO05D005612 7.4e-07 59.7 70 44.3
Glyma.13G156900 Glycine max HOM05D004574 ORTHO05D005612 9.7e-07 59.3 59 52.5
Nn2g12259 Nelumbo nucifera HOM05D004574 ORTHO05D005612 1.3e-06 58.9 69 42.0
CANSAT11G2415 Cannabis sativa HOM05D004574 ORTHO05D005612 2.2e-06 58.2 64 43.8
HanXRQChr12g0357011 Helianthus annuus HOM05D004574 ORTHO05D005612 2.2e-06 58.2 59 47.5
Nitab4.5_0001671g0130 Nicotiana tabacum HOM05D004574 ORTHO05D005612 2.2e-06 58.2 81 38.3
Actinidia21909 Actinidia chinensis HOM05D004574 ORTHO05D005612 2.8e-06 57.8 74 45.9
Cc06_g07390 Coffea canephora HOM05D004574 ORTHO05D005612 2.8e-06 57.8 64 46.9
Lalb_Chr07g0179541 Lupinus albus HOM05D004574 ORTHO05D005612 2.8e-06 57.8 59 44.1
Actinidia04251 Actinidia chinensis HOM05D004574 ORTHO05D005612 3.7e-06 57.4 74 45.9
Oeu040778.1 Olea europaea HOM05D004574 ORTHO05D005612 3.7e-06 57.4 50 58.0
CiPaw.16G117400 Carya illinoinensis HOM05D004574 ORTHO05D005612 4.8e-06 57.0 46 56.5
ECA234G1322 Erigeron canadensis HOM05D004574 ORTHO05D005612 4.8e-06 57.0 49 53.1
Glyma.17G104500 Glycine max HOM05D004574 ORTHO05D005612 4.8e-06 57.0 59 50.8
MD02G1012700 Malus domestica HOM05D004574 ORTHO05D005612 4.8e-06 57.0 64 40.6
RcHm_v2.0_Chr2g0086551 Rosa chinensis HOM05D004574 ORTHO05D005612 4.8e-06 57.0 60 46.7
TAR636G2565 Trochodendron aralioides HOM05D007019 ORTHO05D008398 4.8e-06 57.0 43 74.4
Sabra03G0085400 Salix brachista HOM05D007019 ORTHO05D008398 6.3e-06 56.6 52 59.6
Lj9A709T23 Lonicera japonica HOM05D004574 ORTHO05D005612 8.2e-06 56.2 55 47.3
Lalb_Chr12g0198521 Lupinus albus HOM05D004574 ORTHO05D005612 8.2e-06 56.2 45 55.6
Manes.14G139500 Manihot esculenta HOM05D004574 ORTHO05D005612 8.2e-06 56.2 91 39.6


User provided reference genes

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