Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0212600 Rhododendron simsii HOM05D003426 ORTHO05D003816 1.4e-262 909.1 459 100.0
Actinidia10526 Actinidia chinensis HOM05D003426 ORTHO05D003816 2.4e-52 210.7 451 37.7
Dinv08190 Davidia involucrata HOM05D003426 ORTHO05D003816 8.0e-48 195.7 464 34.1
Rhsim02G0230700 Rhododendron simsii HOM05D000448 ORTHO05D000291 8.8e-39 165.6 180 53.3
RhsimUnG0162700 Rhododendron simsii HOM05D022929 ORTHO05D050680 1.7e-37 161.4 445 30.8
Rhsim07G0165800 Rhododendron simsii HOM05D022929 ORTHO05D050680 1.4e-36 158.3 445 30.6
EL10Ac2g02492 Beta vulgaris HOM05D016866 ORTHO05D003816 6.1e-32 142.9 568 27.6
Cpa.g.sc46.169 Carica papaya HOM05D003426 ORTHO05D003816 7.3e-25 119.4 325 31.7
Cc06_g14810 Coffea canephora HOM05D003426 ORTHO05D003816 8.0e-24 115.9 352 29.5
TAR626G1511 Trochodendron aralioides HOM05D003426 ORTHO05D003816 1.8e-23 114.8 342 30.1
Duzib168G0934 Durio zibethinus HOM05D003426 ORTHO05D003816 3.0e-23 114.0 419 29.1
MD15G1151400 Malus domestica HOM05D003426 ORTHO05D003816 4.4e-22 110.2 370 27.8
Potri.006G182601 Populus trichocarpa HOM05D003426 ORTHO05D003816 4.4e-22 110.2 379 28.2
AUR62032422 Chenopodium quinoa HOM05D016866 ORTHO05D003816 5.8e-22 109.8 381 28.1
Actinidia10525 Actinidia chinensis HOM05D022929 ORTHO05D003816 1.3e-21 108.6 200 41.5
MSTRG.26266 Avicennia marina HOM05D003426 ORTHO05D003816 1.3e-21 108.6 380 28.7
Oeu026460.1 Olea europaea HOM05D003426 ORTHO05D003816 1.7e-21 108.2 326 31.0
PSO210G2240 Papaver somniferum HOM05D003426 ORTHO05D003816 1.7e-21 108.2 359 30.4
Lj9C718T11 Lonicera japonica HOM05D003426 ORTHO05D003816 2.9e-21 107.5 478 27.2
Thecc.09G028500 Theobroma cacao HOM05D003426 ORTHO05D003816 4.9e-21 106.7 388 29.4
Aqoxy7G03377 Aquilegia oxysepala HOM05D003426 ORTHO05D003816 6.4e-21 106.3 364 29.7
AUR62024799 Chenopodium quinoa HOM05D016866 ORTHO05D003816 1.9e-20 104.8 373 28.2
PGSC0003DMG400011187 Solanum tuberosum HOM05D003426 ORTHO05D003816 3.2e-20 104.0 398 29.1
CAN.G160.49 Capsicum annuum HOM05D003426 ORTHO05D003816 5.4e-20 103.2 391 28.9
Cfa020810 Carpinus fangiana HOM05D003426 ORTHO05D003816 5.4e-20 103.2 336 27.7
Actinidia14135 Actinidia chinensis HOM05D022929 ORTHO05D003816 7.0e-20 102.8 389 28.5
Oeu021305.2 Olea europaea HOM05D003426 ORTHO05D003816 2.0e-19 101.3 305 27.5
PSO210G1729 Papaver somniferum HOM05D003426 ORTHO05D003816 2.0e-19 101.3 331 29.3
Peaxi162Scf00401g00417 Petunia axillaris HOM05D003426 ORTHO05D003816 2.0e-19 101.3 333 30.0
TAR636G1172 Trochodendron aralioides HOM05D003426 ORTHO05D003816 2.0e-19 101.3 271 29.9
vmacro16795 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 2.0e-19 101.3 378 30.7
TWI34G0373 Tripterygium wilfordii HOM05D003426 ORTHO05D003816 2.7e-19 100.9 372 29.0
Sopen07g001810 Solanum pennellii HOM05D003426 ORTHO05D003816 4.6e-19 100.1 398 29.9
MD02G1006400 Malus domestica HOM05D003426 ORTHO05D003816 1.3e-18 98.6 371 25.9
Rhsim01G0028100 Rhododendron simsii HOM05D003426 ORTHO05D003816 1.7e-18 98.2 364 27.7
Nn2g12424 Nelumbo nucifera HOM05D003426 ORTHO05D003816 3.0e-18 97.4 399 26.8
SalBow1G0569 Salvia bowleyana HOM05D003426 ORTHO05D003816 3.9e-18 97.1 340 30.9
Solyc07g005700.3 Solanum lycopersicum HOM05D003426 ORTHO05D003816 6.6e-18 96.3 399 29.8
MSTRG.6152 Avicennia marina HOM05D003426 ORTHO05D003816 1.1e-17 95.5 398 28.4
Actinidia23556 Actinidia chinensis HOM05D003426 ORTHO05D003816 1.5e-17 95.1 375 29.1
Hund02984 Selenicereus undatus HOM05D016866 ORTHO05D015160 4.3e-17 93.6 344 26.7
Haze_19169 Corylus avellana HOM05D003426 ORTHO05D003816 7.3e-17 92.8 453 26.3
COL.COLO4_18823 Corchorus olitorius HOM05D003426 ORTHO05D003816 1.2e-16 92.0 347 27.7
Hma1.2p1_2680F.1_g326790 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 2.1e-16 91.3 232 28.9
MD17G1259500 Malus domestica HOM05D003426 ORTHO05D003816 3.6e-16 90.5 407 26.5
Nn8g39953 Nelumbo nucifera HOM05D003426 ORTHO05D003816 4.7e-16 90.1 266 28.9
Solyc10g047670.2 Solanum lycopersicum HOM05D000650 ORTHO05D007302 8.0e-16 89.4 326 24.8
PGSC0003DMG400029015 Solanum tuberosum HOM05D000650 ORTHO05D007302 1.1e-15 89.0 284 25.4
HanXRQChr05g0144001 Helianthus annuus HOM05D003426 ORTHO05D003816 1.4e-15 88.6 338 27.5
Manes.14G144800 Manihot esculenta HOM05D003426 ORTHO05D003816 1.4e-15 88.6 217 34.6
Actinidia38667 Actinidia chinensis HOM05D003426 ORTHO05D003816 4.0e-15 87.0 207 34.8
Lsat_1_v5_gn_8_63641 Lactuca sativa HOM05D003426 ORTHO05D003816 4.0e-15 87.0 354 27.4
Sopen10g018090 Solanum pennellii HOM05D000650 ORTHO05D007302 4.0e-15 87.0 326 24.5
Dinv43256 Davidia involucrata HOM05D003426 ORTHO05D003816 5.2e-15 86.7 405 26.2
CAN.G531.4 Capsicum annuum HOM05D000650 ORTHO05D007302 8.9e-15 85.9 264 26.1
PGSC0003DMG402030146 Solanum tuberosum HOM05D021013 ORTHO05D007302 8.9e-15 85.9 263 26.2
Dinv42844 Davidia involucrata HOM05D003426 ORTHO05D003816 1.2e-14 85.5 298 27.9
Eucgr.C00251 Eucalyptus grandis HOM05D003426 ORTHO05D003816 1.5e-14 85.1 298 26.5
Atru.chr7.23 Acer truncatum HOM05D003426 ORTHO05D003816 2.0e-14 84.7 335 27.8
THA.LOC104803917 Tarenaya hassleriana HOM05D003426 ORTHO05D003816 2.0e-14 84.7 411 25.5
AUR62025323 Chenopodium quinoa HOM05D003426 ORTHO05D003816 3.4e-14 84.0 418 27.0
Glyma.02G205001 Glycine max HOM05D003426 ORTHO05D003816 3.4e-14 84.0 358 25.1
Hma1.2p1_0028F.1_g017630 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 3.4e-14 84.0 356 26.1
MBI15_g18232_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 3.4e-14 84.0 417 26.6
QL02p018769 Quercus lobata HOM05D003426 ORTHO05D003816 3.4e-14 84.0 294 26.2
ECA236G2514 Erigeron canadensis HOM05D003426 ORTHO05D003816 5.8e-14 83.2 405 25.9
Lj4g0000658 Lotus japonicus HOM05D003426 ORTHO05D003816 7.5e-14 82.8 333 27.6
Rhsim03G0257700 Rhododendron simsii HOM05D003426 ORTHO05D003816 7.5e-14 82.8 206 32.0
AUR62028339 Chenopodium quinoa HOM05D003426 ORTHO05D003816 9.8e-14 82.4 406 27.6
Ca_21135_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 1.7e-13 81.6 196 33.7
Ca_21137_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 1.7e-13 81.6 196 33.7
Nn1g05634 Nelumbo nucifera HOM05D000650 ORTHO05D000735 2.2e-13 81.3 258 27.9
EL10Ac8g18943 Beta vulgaris HOM05D003426 ORTHO05D003816 3.7e-13 80.5 392 25.0
CSS0024837 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 4.9e-13 80.1 191 29.8
CiPaw.16G108300 Carya illinoinensis HOM05D003426 ORTHO05D003816 8.3e-13 79.3 226 25.2
Gorai.001G032900 Gossypium raimondii HOM05D003426 ORTHO05D003816 8.3e-13 79.3 315 26.0
Ah.12g060820 Amaranthus hybridus HOM05D016866 ORTHO05D003816 1.1e-12 79.0 325 28.6
Gohir.D07G031500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 1.1e-12 79.0 315 26.0
arahy.Tifrunner.gnm1.ann1.N5DK6E Arachis hypogaea HOM05D003426 ORTHO05D003816 1.4e-12 78.6 331 24.2
Gohir.A07G027500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 1.4e-12 78.6 315 26.0
Dinv17422 Davidia involucrata HOM05D003426 ORTHO05D003816 1.9e-12 78.2 205 32.7
PGR142G3879 Punica granatum HOM05D003426 ORTHO05D003816 1.9e-12 78.2 320 26.2
Sabra06G0139100 Salix brachista HOM05D003426 ORTHO05D003816 1.9e-12 78.2 461 24.9
Sopen10g019310 Solanum pennellii HOM05D003426 ORTHO05D003816 1.9e-12 78.2 209 33.5
arahy.Tifrunner.gnm1.ann1.H6N2T4 Arachis hypogaea HOM05D003426 ORTHO05D003816 3.2e-12 77.4 330 23.9
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 5.4e-12 76.6 194 27.3
Nitab4.5_0005869g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 7.0e-12 76.3 227 26.4
Manes.06G035400 Manihot esculenta HOM05D003426 ORTHO05D003816 9.2e-12 75.9 330 25.8
Manes.10G096300 Manihot esculenta HOM05D000650 ORTHO05D007302 9.2e-12 75.9 258 25.6
Rhsim02G0230800 Rhododendron simsii HOM05D003426 ORTHO05D003816 1.2e-11 75.5 64 60.9
PGSC0003DMG400037110 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.2e-11 75.5 181 34.3
Solyc10g048140.2 Solanum lycopersicum HOM05D003426 ORTHO05D003816 1.6e-11 75.1 209 32.1
Medtr4g130690 Medicago truncatula HOM05D003426 ORTHO05D003816 2.1e-11 74.7 236 31.8
Nitab4.5_0001571g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 2.1e-11 74.7 209 27.3
CANSAT11G1136 Cannabis sativa HOM05D003426 ORTHO05D003816 2.7e-11 74.3 365 26.0
PSO561G0041 Papaver somniferum HOM05D003426 ORTHO05D003816 2.7e-11 74.3 213 33.8
Phvul.003G155200 Phaseolus vulgaris HOM05D003426 ORTHO05D003816 3.5e-11 73.9 408 23.8
SalBow6G1286 Salvia bowleyana HOM05D000650 ORTHO05D007302 3.5e-11 73.9 161 31.7
Sed0021282 Sechium edule HOM05D003426 ORTHO05D003816 3.5e-11 73.9 316 27.2
vmacro01871 Vaccinium macrocarpon HOM05D000650 ORTHO05D007302 3.5e-11 73.9 160 31.2
Lj7P460T26 Lonicera japonica HOM05D003426 ORTHO05D003816 4.6e-11 73.6 171 30.4
PSO111G0039 Papaver somniferum HOM05D003426 ORTHO05D003816 4.6e-11 73.6 213 31.9
TAR625G0621 Trochodendron aralioides HOM05D003426 ORTHO05D003816 7.8e-11 72.8 315 25.1
Medtr4g129690 Medicago truncatula HOM05D003426 ORTHO05D003816 1.3e-10 72.0 204 31.4
CiPaw.15G166800 Carya illinoinensis HOM05D003426 ORTHO05D003816 2.3e-10 71.2 215 28.4
QL02p018764 Quercus lobata HOM05D003426 ORTHO05D003816 3.0e-10 70.9 251 27.1
Carub.0004s0319 Capsella rubella HOM05D012895 ORTHO05D014428 3.9e-10 70.5 422 22.7
DCAR_019401 Daucus carota HOM05D003426 ORTHO05D003816 3.9e-10 70.5 182 28.6
Medtr3g045840 Medicago truncatula HOM05D003426 ORTHO05D003816 3.9e-10 70.5 277 27.1
Phvul.010G050200 Phaseolus vulgaris HOM05D003426 ORTHO05D003816 6.6e-10 69.7 230 29.1
TAR625G0834 Trochodendron aralioides HOM05D000650 ORTHO05D000735 6.6e-10 69.7 173 26.0
PGSC0003DMG400036381 Solanum tuberosum HOM05D003426 ORTHO05D003816 8.6e-10 69.3 174 35.1
PGSC0003DMG400040160 Solanum tuberosum HOM05D003426 ORTHO05D003816 8.6e-10 69.3 185 30.8
Manes.10G096200 Manihot esculenta HOM05D000650 ORTHO05D014428 1.1e-09 68.9 201 29.9
CSS0023548 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D007302 1.5e-09 68.6 205 26.3
CSS0029976 Camellia sinensis var. sinensis HOM05D000650 ORTHO05D007302 1.5e-09 68.6 209 25.8
Prupe.7G264500 Prunus persica HOM05D003426 ORTHO05D003816 1.5e-09 68.6 382 24.1
MBI14_g30955_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 1.9e-09 68.2 303 25.7
Os06g0651300 Oryza sativa ssp. japonica HOM05D003426 ORTHO05D003816 1.9e-09 68.2 214 28.5
Glyma.17G184200 Glycine max HOM05D003426 ORTHO05D003816 2.5e-09 67.8 169 30.8
Hund08921 Selenicereus undatus HOM05D003426 ORTHO05D003816 3.3e-09 67.4 179 30.7
Phvul.002G214600 Phaseolus vulgaris HOM05D000650 ORTHO05D007302 4.3e-09 67.0 172 29.1
TAR625G0266 Trochodendron aralioides HOM05D000650 ORTHO05D003816 4.3e-09 67.0 147 28.6
FAN26G0769 Fragaria x ananassa HOM05D003426 ORTHO05D003816 7.3e-09 66.2 403 25.3
TPR.G24886 Trifolium pratense HOM05D003426 ORTHO05D003816 7.3e-09 66.2 110 36.4
Glyma.17G072900 Glycine max HOM05D003426 ORTHO05D003816 9.5e-09 65.9 157 28.0
Lj4g0018033 Lotus japonicus HOM05D000650 ORTHO05D007302 9.5e-09 65.9 195 27.7
SGA_v2.0_scaffold265G46098 Striga asiatica HOM05D003426 ORTHO05D003816 9.5e-09 65.9 166 31.9
Sc14g0000930 Simmondsia chinensis HOM05D003426 ORTHO05D003816 1.2e-08 65.5 366 24.6
MELO3C010212.2 Cucumis melo HOM05D003426 ORTHO05D003816 1.6e-08 65.1 318 24.2
TAR625G0371 Trochodendron aralioides HOM05D000650 ORTHO05D000735 1.6e-08 65.1 68 41.2
FvH4_2g11450 Fragaria vesca HOM05D000650 ORTHO05D007302 2.1e-08 64.7 179 28.5
HanXRQChr10g0313661 Helianthus annuus HOM05D003426 ORTHO05D003816 2.1e-08 64.7 161 28.0
Lsat_1_v5_gn_5_90221 Lactuca sativa HOM05D029854 ORTHO05D003816 2.1e-08 64.7 353 25.8
Lalb_Chr12g0198761 Lupinus albus HOM05D003426 ORTHO05D003816 2.1e-08 64.7 114 40.4
QL02p093542 Quercus lobata HOM05D001418 ORTHO05D002038 2.1e-08 64.7 150 27.3
RcHm_v2.0_Chr6g0270121 Rosa chinensis HOM05D000650 ORTHO05D007302 2.1e-08 64.7 177 26.0
SGA_v2.0_scaffold1435G53950 Striga asiatica HOM05D003426 ORTHO05D003816 2.1e-08 64.7 218 29.4
vmacro06066 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 2.1e-08 64.7 215 31.2
Rhsim11G0141100 Rhododendron simsii HOM05D000650 ORTHO05D007302 2.8e-08 64.3 161 32.3
FAN28G0527 Fragaria x ananassa HOM05D003426 ORTHO05D003816 3.6e-08 63.9 383 26.4
Os09g0421600 Oryza sativa ssp. japonica HOM05D015084 ORTHO05D015160 3.6e-08 63.9 250 23.6
Lj4g0006994 Lotus japonicus HOM05D003426 ORTHO05D003816 4.7e-08 63.5 339 26.0
SEGI_37162 Sequoiadendron giganteum HOM05D015783 ORTHO05D021004 6.2e-08 63.2 290 24.1
FAN15G2135 Fragaria x ananassa HOM05D000650 ORTHO05D007302 8.1e-08 62.8 168 30.4
Glyma.17G073000 Glycine max HOM05D003426 ORTHO05D003816 8.1e-08 62.8 184 28.3
Nitab4.5_0011705g0030 Nicotiana tabacum HOM05D003426 ORTHO05D003816 8.1e-08 62.8 72 47.2
PGSC0003DMG400040189 Solanum tuberosum HOM05D003426 ORTHO05D003816 8.1e-08 62.8 184 32.6
TAR381G0504 Trochodendron aralioides HOM05D000650 ORTHO05D000735 8.1e-08 62.8 200 27.5
Zm00001eb388770 Zea mays HOM05D003426 ORTHO05D003816 8.1e-08 62.8 238 25.6
Lalb_Chr13g0300811 Lupinus albus HOM05D003426 ORTHO05D003816 1.1e-07 62.4 291 26.5
AL4G14080 Arabidopsis lyrata HOM05D012895 ORTHO05D014428 1.4e-07 62.0 423 22.5
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 1.4e-07 62.0 399 22.3
Aqoxy6G00819 Aquilegia oxysepala HOM05D000650 ORTHO05D000735 1.8e-07 61.6 154 31.2
Lsat_1_v5_gn_5_90161 Lactuca sativa HOM05D029854 ORTHO05D003816 1.8e-07 61.6 146 31.5
FAN20G2154 Fragaria x ananassa HOM05D003426 ORTHO05D007302 2.3e-07 61.2 164 31.7
PSO675G1450 Papaver somniferum HOM05D003426 ORTHO05D003816 3.1e-07 60.8 279 26.9
QL11p029412 Quercus lobata HOM05D000650 ORTHO05D007302 3.1e-07 60.8 220 23.2
Lsat_1_v5_gn_5_89740 Lactuca sativa HOM05D003426 ORTHO05D003816 5.2e-07 60.1 225 28.9
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 5.2e-07 60.1 135 27.4
Lj4g0020470 Lotus japonicus HOM05D000650 ORTHO05D007302 6.8e-07 59.7 193 23.8
Dinv24138 Davidia involucrata HOM05D000650 ORTHO05D007302 8.9e-07 59.3 165 24.2
Rhsim02G0230600 Rhododendron simsii HOM05D000448 ORTHO05D000291 1.2e-06 58.9 104 42.3
ECA234G0256 Erigeron canadensis HOM05D003426 ORTHO05D003816 1.5e-06 58.5 275 24.7
Haze_10696 Corylus avellana HOM05D000650 ORTHO05D007302 2.0e-06 58.2 202 24.3
Migut.J01365 Erythranthe guttata HOM05D003426 ORTHO05D003816 2.0e-06 58.2 357 23.0
Nitab4.5_0000123g0610 Nicotiana tabacum HOM05D003426 ORTHO05D007302 2.0e-06 58.2 223 26.9
Psat4g009680 Pisum sativum HOM05D003426 ORTHO05D003816 2.0e-06 58.2 101 37.6
FvH4_1g00800 Fragaria vesca HOM05D003426 ORTHO05D003816 2.6e-06 57.8 402 24.9
GSVIVG01012543001 Vitis vinifera HOM05D000650 ORTHO05D007302 2.6e-06 57.8 197 24.4
Rhsim11G0142600 Rhododendron simsii HOM05D002143 ORTHO05D338981 3.4e-06 57.4 49 53.1
RcHm_v2.0_Chr6g0270191 Rosa chinensis HOM05D000650 ORTHO05D007302 3.4e-06 57.4 103 35.0
Sed0017290 Sechium edule HOM05D003426 ORTHO05D003816 3.4e-06 57.4 209 26.8
COL.COLO4_32414 Corchorus olitorius HOM05D000650 ORTHO05D007302 4.4e-06 57.0 88 39.8
PGSC0003DMG401030146 Solanum tuberosum HOM05D000650 ORTHO05D007302 4.4e-06 57.0 95 32.6
Psat4g010040 Pisum sativum HOM05D003426 ORTHO05D003816 5.8e-06 56.6 186 28.5
Rhsim11G0141300 Rhododendron simsii HOM05D000650 ORTHO05D007302 5.8e-06 56.6 49 53.1
AT2G19380 Arabidopsis thaliana HOM05D006355 ORTHO05D011679 7.5e-06 56.2 181 28.2
CSS0041479 Camellia sinensis var. sinensis HOM05D000650 ORTHO05D007302 7.5e-06 56.2 136 27.9
DCAR_029285 Daucus carota HOM05D000650 ORTHO05D007302 7.5e-06 56.2 154 25.3
Lj4g0012325 Lotus japonicus HOM05D000650 ORTHO05D007302 7.5e-06 56.2 67 37.3
RcHm_v2.0_Chr6g0270171 Rosa chinensis HOM05D000650 ORTHO05D007302 7.5e-06 56.2 209 24.9
Haze_10691 Corylus avellana HOM05D000650 ORTHO05D007302 9.9e-06 55.8 312 19.6
Manes.07G043100 Manihot esculenta HOM05D000650 ORTHO05D015160 9.9e-06 55.8 169 27.2
PSO675G7028 Papaver somniferum HOM05D003426 ORTHO05D003816 9.9e-06 55.8 198 25.8
Sed0023941 Sechium edule HOM05D003426 ORTHO05D003816 9.9e-06 55.8 138 30.4


User provided reference genes

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