Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 0.0e+00 1206.8 631 100.0
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 9.6e-278 959.9 630 79.0
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 1.3e-266 922.9 634 78.1
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 2.3e-247 859.0 626 70.6
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 1.5e-246 856.3 509 88.0
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 3.3e-246 855.1 509 87.8
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 3.9e-239 831.6 631 68.6
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 1.1e-238 830.1 628 67.7
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 5.2e-231 804.7 632 66.0
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 3.3e-230 802.0 632 65.7
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 2.5e-225 785.8 634 63.4
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 2.5e-225 785.8 628 64.2
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 7.2e-225 784.3 630 64.1
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 3.3e-222 775.4 629 63.0
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 5.7e-222 774.6 629 63.3
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 4.8e-221 771.5 632 63.8
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 1.4e-220 770.0 631 63.2
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 2.4e-220 769.2 628 62.9
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 4.1e-220 768.5 637 63.6
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 9.1e-220 767.3 567 70.0
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 3.8e-218 761.9 634 62.3
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 1.1e-217 760.4 622 63.0
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 1.5e-217 760.0 622 63.3
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 2.5e-217 759.2 628 62.1
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 7.2e-217 757.7 627 61.7
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 4.7e-216 755.0 627 61.4
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 1.4e-215 753.4 633 60.8
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 6.8e-215 751.1 631 61.0
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.6e-214 749.2 627 60.9
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 5.7e-214 748.0 631 61.8
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 9.8e-214 747.3 631 60.9
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 9.8e-214 747.3 631 62.6
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 8.3e-213 744.2 634 61.0
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.4e-212 742.7 626 60.9
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 1.2e-211 740.3 635 61.3
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 2.7e-211 739.2 628 61.9
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 7.7e-211 737.6 635 61.4
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 2.9e-210 735.7 657 60.0
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 5.0e-210 734.9 667 60.0
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.1e-209 733.8 592 66.7
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 3.6e-208 728.8 630 58.7
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 4.7e-208 728.4 632 59.8
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 1.8e-207 726.5 637 59.8
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 3.4e-206 722.2 630 58.7
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 7.5e-206 721.1 621 60.5
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 2.2e-205 719.5 629 59.5
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 4.1e-204 715.3 630 59.2
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 4.5e-203 711.8 518 71.0
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 5.9e-203 711.4 641 58.8
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 1.0e-202 710.7 621 60.1
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 2.9e-202 709.1 631 58.6
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 1.9e-201 706.4 630 59.8
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 1.9e-201 706.4 630 59.8
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 1.9e-201 706.4 672 56.0
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 3.3e-201 705.7 626 60.5
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 5.6e-201 704.9 629 60.3
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 9.5e-201 704.1 634 59.3
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 2.1e-200 703.0 628 59.1
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 1.4e-199 700.3 628 59.1
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 1.4e-199 700.3 632 59.3
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 6.8e-199 698.0 626 58.9
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 8.9e-199 697.6 627 59.0
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 1.5e-198 696.8 633 59.6
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 1.7e-197 693.3 631 59.9
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 2.2e-197 693.0 620 59.5
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 2.9e-197 692.6 630 59.0
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 1.9e-196 689.9 628 58.0
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 9.2e-196 687.6 645 56.9
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 2.7e-195 686.0 626 58.0
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 2.7e-195 686.0 568 63.2
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 2.3e-194 682.9 610 59.7
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 3.0e-194 682.6 566 63.4
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 5.2e-191 671.8 595 59.7
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 6.4e-189 664.8 622 57.4
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 8.3e-189 664.5 626 55.4
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 6.0e-187 658.3 627 56.0
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 1.5e-185 653.7 662 54.7
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 4.3e-185 652.1 623 55.2
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 1.8e-183 646.7 631 56.6
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 1.7e-181 640.2 550 61.5
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 4.9e-181 638.6 538 62.6
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 1.6e-179 633.6 625 52.8
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 5.1e-178 628.6 569 58.7
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 3.3e-177 625.9 552 60.7
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 3.6e-176 622.5 528 61.6
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 1.4e-175 620.5 626 54.5
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 6.8e-175 618.2 511 62.4
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 2.3e-170 603.2 630 51.3
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 2.2e-165 586.6 469 63.1
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 6.4e-165 585.1 627 53.0
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 1.3e-160 570.9 661 48.7
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 4.0e-159 565.8 449 65.9
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 7.6e-158 561.6 465 63.4
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 3.8e-157 559.3 626 48.9
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 1.1e-151 541.2 606 51.7
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 4.0e-143 512.7 635 46.5
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.0e-130 471.5 392 60.7
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 4.8e-128 462.6 587 46.3
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 1.1e-127 461.5 478 51.9
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 4.1e-127 459.5 362 65.5
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 7.2e-100 369.0 367 60.2
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.2e-97 361.7 631 34.7
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 8.0e-91 339.0 645 33.5
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 2.3e-90 337.4 389 49.4
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 1.2e-89 335.1 631 37.9
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 1.5e-81 308.1 513 40.4
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 1.5e-81 308.1 513 40.4
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 1.9e-76 291.2 507 35.9
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 6.2e-75 286.2 619 31.8
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 3.1e-74 283.9 379 45.6
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.6e-70 271.6 260 54.2
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 4.3e-52 210.3 184 58.2
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 1.1e-50 205.7 255 46.7
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 9.0e-50 202.6 255 46.3
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 4.5e-41 173.7 162 56.2
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 1.3e-40 172.2 407 30.5
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 2.4e-39 167.9 130 69.2
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 2.1e-38 164.9 143 62.2
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 3.5e-38 164.1 162 54.9
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 3.5e-38 164.1 150 56.0
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 3.0e-37 161.0 222 44.6
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 1.9e-36 158.3 164 49.4
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.6e-35 155.2 142 57.0
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 4.8e-35 153.7 169 47.3
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.3e-29 135.6 325 30.5
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.8e-29 135.2 401 30.2
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 3.3e-28 131.0 135 54.1
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 6.9e-26 123.2 367 30.8
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 8.4e-24 116.3 345 33.6
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 1.6e-22 112.1 122 48.4
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 7.4e-20 103.2 82 62.2
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.4e-18 98.2 65 73.8
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 3.1e-18 97.8 91 53.8
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 7.7e-17 93.2 153 37.3
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 1.3e-16 92.4 59 72.9
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 4.6e-14 84.0 82 54.9
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 3.7e-11 74.3 113 34.5
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 8.2e-11 73.2 94 50.0
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 1.4e-10 72.4 129 37.2
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 3.1e-10 71.2 69 50.7
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 4.1e-10 70.9 41 80.5
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 1.5e-09 68.9 72 54.2
Rhsim01G0220500 Rhododendron simsii HOM05D004744 ORTHO05D005655 1.3e-08 65.9 50 68.0
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 1.4e-07 62.4 42 66.7
Actinidia13212 Actinidia chinensis HOM05D004744 ORTHO05D005655 7.2e-07 60.1 42 71.4
SEGI_21256 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 9.4e-07 59.7 82 40.2
CsaV3_5G015120 Cucumis sativus L. HOM05D004744 ORTHO05D005655 2.7e-06 58.2 68 52.9
Lsat_1_v5_gn_7_37280 Lactuca sativa HOM05D002279 ORTHO05D017063 2.7e-06 58.2 43 60.5


User provided reference genes

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