Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 3.9e-131 471.5 239 100.0
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 4.4e-82 308.5 248 69.4
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.4e-72 276.2 205 70.7
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 7.0e-72 274.6 204 70.1
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 9.2e-72 274.2 206 68.4
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 6.0e-71 271.6 207 69.6
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.0e-70 270.8 203 69.5
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.7e-70 270.0 202 69.8
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 2.3e-70 269.6 206 68.4
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 1.1e-69 267.3 203 67.5
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.5e-69 266.9 206 68.0
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.5e-69 266.9 206 67.0
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.5e-69 266.9 206 68.0
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.5e-69 266.9 206 67.0
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.9e-69 266.5 206 68.0
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 2.5e-69 266.2 204 67.6
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.6e-69 265.0 204 66.7
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 7.3e-69 264.6 202 68.8
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 1.2e-68 263.8 203 66.5
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.2e-68 263.8 202 67.3
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 1.2e-68 263.8 204 68.6
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.2e-68 263.8 205 66.3
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 1.2e-68 263.8 208 64.9
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 2.1e-68 263.1 200 70.0
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 2.1e-68 263.1 206 67.0
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 2.8e-68 262.7 203 66.5
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 3.6e-68 262.3 205 68.8
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 4.7e-68 261.9 204 66.7
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 6.2e-68 261.5 204 66.7
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 6.2e-68 261.5 203 67.0
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 8.0e-68 261.2 237 57.8
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 8.0e-68 261.2 206 67.5
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 8.0e-68 261.2 203 66.5
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 1.4e-67 260.4 205 67.3
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 1.4e-67 260.4 206 65.0
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.4e-67 260.4 200 67.0
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.4e-67 260.4 207 66.2
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 1.8e-67 260.0 203 65.5
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.1e-67 259.2 204 68.1
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 5.2e-67 258.5 205 66.8
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 5.2e-67 258.5 202 66.3
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 6.8e-67 258.1 203 65.0
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 6.8e-67 258.1 202 65.8
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.2e-66 257.3 200 67.0
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 1.2e-66 257.3 205 65.9
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 1.5e-66 256.9 230 58.3
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 1.5e-66 256.9 206 65.0
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.5e-66 256.9 204 66.2
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.5e-66 256.9 204 66.2
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.6e-66 256.1 205 67.8
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.6e-66 256.1 205 67.8
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 2.6e-66 256.1 200 66.5
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 2.6e-66 256.1 204 67.2
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 2.6e-66 256.1 201 66.7
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 4.4e-66 255.4 202 65.3
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 5.8e-66 255.0 204 65.7
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 5.8e-66 255.0 204 65.7
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 7.5e-66 254.6 204 65.7
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 9.8e-66 254.2 202 66.8
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 3.7e-65 252.3 204 65.2
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 3.7e-65 252.3 202 65.3
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 6.4e-65 251.5 200 65.5
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 6.4e-65 251.5 204 65.2
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 8.3e-65 251.1 206 63.1
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 1.4e-64 250.4 200 64.0
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 1.2e-63 247.3 204 63.2
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.7e-63 246.1 193 67.9
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 2.7e-63 246.1 207 63.8
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.5e-63 245.7 203 65.0
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.5e-63 245.7 203 65.0
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.3e-62 243.0 198 65.7
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 2.3e-62 243.0 202 64.9
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 5.0e-62 241.9 202 64.4
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 5.0e-62 241.9 202 64.4
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 8.6e-62 241.1 203 62.6
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 4.3e-61 238.8 202 63.9
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 4.3e-61 238.8 203 58.6
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 9.5e-61 237.7 202 63.4
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 9.5e-61 237.7 204 62.7
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 1.2e-60 237.3 202 61.9
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.6e-60 236.9 192 63.5
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 2.1e-60 236.5 191 63.4
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.1e-60 236.5 202 63.4
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.8e-60 236.1 191 63.9
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 2.8e-60 236.1 204 62.3
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 3.6e-60 235.7 191 63.4
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 3.6e-60 235.7 192 63.5
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 1.4e-59 233.8 206 62.6
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 1.8e-59 233.4 201 61.7
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 2.3e-59 233.0 201 61.2
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 5.2e-59 231.9 195 63.6
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 6.8e-59 231.5 189 63.0
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 8.9e-59 231.1 191 63.4
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 8.9e-59 231.1 191 63.4
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.2e-58 230.7 201 62.2
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 1.5e-58 230.3 195 63.1
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.5e-58 230.3 191 62.8
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.6e-58 229.6 191 61.3
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 4.4e-58 228.8 195 62.1
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 4.4e-58 228.8 200 61.5
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 5.8e-58 228.4 204 61.3
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.3e-57 227.3 191 60.7
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 1.7e-57 226.9 200 59.0
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.2e-57 226.5 191 60.2
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 4.9e-57 225.3 201 61.7
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 6.4e-57 224.9 191 60.7
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 8.3e-57 224.6 126 85.7
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 1.1e-56 224.2 201 61.2
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 1.4e-56 223.8 191 58.6
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 1.4e-56 223.8 191 58.6
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.4e-56 223.8 200 60.0
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.9e-56 223.4 191 58.6
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 3.2e-56 222.6 191 60.2
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 4.1e-56 222.2 191 58.6
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 5.4e-56 221.9 192 63.5
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 7.1e-56 221.5 191 58.6
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 2.1e-55 219.9 202 57.9
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 6.0e-55 218.4 157 72.0
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.3e-54 216.5 192 62.0
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 5.1e-54 215.3 203 59.6
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.6e-54 214.9 126 81.7
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.6e-52 210.3 200 58.5
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 1.1e-48 197.6 175 58.9
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.2e-47 194.1 201 54.7
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 1.6e-47 193.7 120 81.7
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 5.1e-46 188.7 203 52.7
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.5e-45 187.2 196 56.1
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 5.6e-45 185.3 198 55.1
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.6e-44 183.7 193 50.3
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 1.6e-44 183.7 110 85.5
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 1.6e-44 183.7 105 84.8
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 2.8e-44 183.0 102 87.3
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 4.9e-41 172.2 191 49.2
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.6e-39 167.2 192 46.9
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 4.6e-39 165.6 192 46.9
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 4.6e-39 165.6 163 55.8
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.6e-36 157.1 138 60.1
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 9.3e-32 141.4 207 44.4
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 6.0e-31 138.7 191 40.8
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 1.0e-30 137.9 192 41.7
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 4.8e-28 129.0 175 41.1
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 4.5e-26 122.5 200 42.0
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 4.9e-25 119.0 148 48.6
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 2.2e-17 93.6 53 84.9
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 1.3e-12 77.8 124 36.3
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 1.8e-11 73.9 97 43.3
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 4.1e-11 72.8 101 42.6
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 6.9e-11 72.0 40 87.5
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 6.9e-11 72.0 56 64.3
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.2e-10 71.2 116 36.2
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 1.2e-10 71.2 62 59.7
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 6.5e-09 65.5 89 39.3
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 1.9e-08 63.9 89 39.3
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 1.6e-07 60.8 37 83.8
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.1e-07 58.9 41 68.3


User provided reference genes

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