Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 5.2e-87 324.3 161 100.0
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.8e-63 246.1 122 100.0
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.3e-37 160.2 84 94.0
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 5.1e-34 148.3 84 89.3
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 2.2e-32 142.9 85 88.2
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 8.2e-32 141.0 85 87.1
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 3.1e-31 139.0 84 79.8
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 4.1e-31 138.7 83 81.9
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 9.0e-31 137.5 85 81.2
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 9.0e-31 137.5 85 81.2
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 1.0e-29 134.0 83 78.3
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 6.5e-29 131.3 84 79.8
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.1e-28 130.6 83 79.5
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.1e-28 130.6 83 80.7
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 2.5e-28 129.4 84 79.8
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 2.5e-28 129.4 79 82.3
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 4.2e-28 128.6 81 76.5
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 5.5e-28 128.3 85 76.5
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 7.2e-28 127.9 84 75.0
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 7.2e-28 127.9 84 72.6
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 7.2e-28 127.9 84 72.6
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.6e-27 126.7 84 71.4
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 4.6e-27 125.2 84 72.6
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 7.9e-27 124.4 84 78.6
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 7.9e-27 124.4 84 77.4
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 1.3e-26 123.6 77 75.3
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.3e-26 122.9 84 70.2
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 2.3e-26 122.9 85 72.9
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 5.1e-26 121.7 86 75.6
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 5.1e-26 121.7 79 75.9
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 6.7e-26 121.3 84 77.4
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 8.8e-26 120.9 84 72.6
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 1.1e-25 120.6 80 67.5
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 1.1e-25 120.6 77 76.6
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 1.5e-25 120.2 82 73.2
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 1.9e-25 119.8 86 72.1
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 2.5e-25 119.4 84 72.6
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.5e-25 119.4 81 71.6
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 4.3e-25 118.6 78 74.4
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 5.7e-25 118.2 79 73.4
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 5.7e-25 118.2 83 72.3
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 7.4e-25 117.9 82 74.4
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 7.4e-25 117.9 79 73.4
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 9.7e-25 117.5 80 75.0
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 1.3e-24 117.1 79 70.9
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 1.3e-24 117.1 79 67.1
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 1.7e-24 116.7 86 67.4
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 1.7e-24 116.7 81 70.4
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 2.2e-24 116.3 83 73.5
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 3.7e-24 115.5 78 73.1
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 3.7e-24 115.5 84 71.4
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 3.7e-24 115.5 79 70.9
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 4.8e-24 115.2 78 73.1
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 4.8e-24 115.2 78 73.1
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 6.3e-24 114.8 84 67.9
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 8.2e-24 114.4 84 71.4
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 1.1e-23 114.0 78 71.8
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 1.8e-23 113.2 84 69.0
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 4.1e-23 112.1 84 70.2
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 6.9e-23 111.3 85 67.1
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 9.1e-23 110.9 84 69.0
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 1.2e-22 110.5 91 61.5
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 1.5e-22 110.2 79 69.6
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 1.5e-22 110.2 83 63.9
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 3.4e-22 109.0 79 64.6
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 1.3e-21 107.1 80 71.2
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 1.7e-21 106.7 78 66.7
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.2e-21 106.3 80 63.8
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 2.2e-21 106.3 79 69.6
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 2.9e-21 105.9 84 67.9
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 3.8e-21 105.5 79 65.8
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 3.8e-21 105.5 79 65.8
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 3.8e-21 105.5 79 65.8
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 3.8e-21 105.5 75 68.0
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 6.5e-21 104.8 93 63.4
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 1.9e-20 103.2 78 67.9
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 4.2e-20 102.1 84 60.7
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 7.2e-20 101.3 83 61.4
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 9.4e-20 100.9 86 61.6
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 1.2e-19 100.5 94 59.6
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.6e-19 100.1 79 62.0
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.6e-19 100.1 87 62.1
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.1e-19 99.8 89 62.9
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 2.1e-19 99.8 87 60.9
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 2.7e-19 99.4 79 63.3
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 2.7e-19 99.4 79 63.3
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 3.6e-19 99.0 79 60.8
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 3.6e-19 99.0 79 63.3
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 3.6e-19 99.0 79 63.3
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 3.6e-19 99.0 78 66.7
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 7.9e-19 97.8 78 65.4
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 1.0e-18 97.4 79 59.5
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 1.4e-18 97.1 121 49.6
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.8e-18 96.7 78 60.3
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.8e-18 96.7 96 56.2
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 2.3e-18 96.3 91 57.1
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.3e-18 96.3 91 58.2
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 2.3e-18 96.3 102 52.0
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 2.3e-18 96.3 84 58.3
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 3.0e-18 95.9 79 60.8
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 3.9e-18 95.5 80 58.8
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 3.9e-18 95.5 79 60.8
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 5.1e-18 95.1 100 58.0
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 5.1e-18 95.1 94 57.4
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 6.7e-18 94.7 79 59.5
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 6.7e-18 94.7 79 60.8
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 8.8e-18 94.4 79 62.0
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.1e-17 94.0 78 62.8
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.0e-17 93.2 80 53.8
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 2.0e-17 93.2 79 64.6
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 3.3e-17 92.4 79 60.8
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 5.7e-17 91.7 87 54.0
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 5.7e-17 91.7 89 51.7
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 7.4e-17 91.3 91 54.9
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 7.4e-17 91.3 76 63.2
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.3e-16 90.5 86 59.3
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.7e-16 90.1 79 57.0
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 1.7e-16 90.1 79 62.0
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 2.2e-16 89.7 95 49.5
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 8.2e-16 87.8 79 53.2
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 9.1e-15 84.3 82 53.7
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.2e-14 84.0 82 51.2
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 1.2e-14 84.0 86 53.5
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 1.2e-14 84.0 84 52.4
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 5.9e-14 81.6 82 50.0
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 5.9e-14 81.6 76 57.9
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 7.7e-14 81.3 82 51.2
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 7.7e-14 81.3 81 54.3
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 2.5e-12 76.3 86 46.5
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.5e-12 76.3 104 45.2
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 5.5e-12 75.1 70 54.3
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 6.1e-11 71.6 96 42.7
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 1.4e-10 70.5 57 64.9
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.1e-09 67.4 84 47.6
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.1e-09 67.4 90 45.6
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-09 67.4 63 57.1
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-09 67.4 63 57.1
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.0e-09 66.6 90 44.4
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 3.7e-08 62.4 83 47.0
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 4.8e-08 62.0 84 46.4
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 2.4e-07 59.7 71 46.5
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 1.2e-06 57.4 88 42.0
Medtr1g102820 Medicago truncatula HOM05D003667 ORTHO05D004397 1.6e-06 57.0 63 50.8
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 4.5e-06 55.5 41 63.4


User provided reference genes

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