Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0191700 Rhododendron simsii HOM05D003875 ORTHO05D004240 4.5e-166 587.8 286 100.0
Rhsim02G0189500 Rhododendron simsii HOM05D003875 ORTHO05D004240 1.8e-114 416.4 285 75.8
RhsimUnG0218800 Rhododendron simsii HOM05D003875 ORTHO05D004240 1.4e-106 390.2 268 76.9
Rhsim02G0192900 Rhododendron simsii HOM05D003875 ORTHO05D004240 7.9e-70 268.1 148 87.8
Actinidia13268 Actinidia chinensis HOM05D003875 ORTHO05D004240 3.3e-68 262.7 280 51.4
Prupe.1G471500 Prunus persica HOM05D003875 ORTHO05D004240 2.9e-64 249.6 290 47.9
Dinv11597 Davidia involucrata HOM05D003875 ORTHO05D004240 6.5e-64 248.4 283 51.9
MD08G1141600 Malus domestica HOM05D003875 ORTHO05D004240 5.7e-60 235.3 290 46.9
CiPaw.08G014300 Carya illinoinensis HOM05D003875 ORTHO05D004240 8.2e-59 231.5 283 46.6
arahy.Tifrunner.gnm1.ann1.3Z1QL9 Arachis hypogaea HOM05D003875 ORTHO05D004240 1.4e-58 230.7 293 45.7
FvH4_2g29810 Fragaria vesca HOM05D003875 ORTHO05D004240 1.4e-58 230.7 304 47.0
arahy.Tifrunner.gnm1.ann1.R0TJM1 Arachis hypogaea HOM05D003875 ORTHO05D004240 3.1e-58 229.6 293 46.1
Lalb_Chr04g0257471 Lupinus albus HOM05D003875 ORTHO05D004240 6.9e-58 228.4 293 45.1
Potri.018G032700 Populus trichocarpa HOM05D003875 ORTHO05D004240 4.5e-57 225.7 293 45.1
TWI34G0133 Tripterygium wilfordii HOM05D003875 ORTHO05D004240 4.5e-57 225.7 282 48.2
Atru.chr7.2231 Acer truncatum HOM05D003875 ORTHO05D004240 7.6e-57 224.9 301 45.5
Oeu030072.1 Olea europaea HOM05D003875 ORTHO05D004240 1.3e-56 224.2 293 46.1
QL12p024553 Quercus lobata HOM05D003875 ORTHO05D004240 1.3e-56 224.2 293 45.1
Cc11_g01490 Coffea canephora HOM05D003875 ORTHO05D004240 1.7e-56 223.8 294 43.5
Atru.chr7.2352 Acer truncatum HOM05D003875 ORTHO05D004240 1.1e-55 221.1 301 45.5
Ca_12920_v3 Cicer arietinum L. HOM05D003875 ORTHO05D004240 1.1e-55 221.1 295 42.0
Manes.03G018500 Manihot esculenta HOM05D003875 ORTHO05D004240 1.1e-55 221.1 291 44.0
Ciclev10008314m.g Citrus clementina HOM05D003875 ORTHO05D004240 1.6e-54 217.2 295 44.1
Duzib168G0377 Durio zibethinus HOM05D003875 ORTHO05D004240 6.1e-54 215.3 291 44.7
Phvul.001G054300 Phaseolus vulgaris HOM05D003875 ORTHO05D004240 6.1e-54 215.3 294 42.2
Cfa013196 Carpinus fangiana HOM05D003491 ORTHO05D004293 1.8e-53 213.8 290 43.4
Sabra18G0033500 Salix brachista HOM05D003875 ORTHO05D004240 1.8e-53 213.8 294 44.6
Atru.chr7.2228 Acer truncatum HOM05D003875 ORTHO05D004240 6.7e-53 211.8 284 44.7
Thecc.09G147200 Theobroma cacao HOM05D003875 ORTHO05D004240 5.7e-52 208.8 292 44.5
CANSAT64G0144 Cannabis sativa HOM05D003875 ORTHO05D004240 1.3e-51 207.6 284 43.3
Psat6g030240 Pisum sativum HOM05D003875 ORTHO05D004240 2.2e-51 206.8 298 41.3
TPR.G15662 Trifolium pratense HOM05D003875 ORTHO05D004240 2.2e-51 206.8 298 40.9
Atru.chr7.2348 Acer truncatum HOM05D003875 ORTHO05D004240 6.3e-51 205.3 279 45.2
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 8.2e-51 204.9 176 63.1
Medtr1g011660 Medicago truncatula HOM05D003875 ORTHO05D004240 1.1e-50 204.5 291 42.3
Glyma.17G206400 Glycine max HOM05D003875 ORTHO05D004240 2.4e-50 203.4 294 41.2
VMungo0647G0068 Vigna mungo HOM05D003875 ORTHO05D004240 3.1e-50 203.0 299 42.1
Lj4g0004496 Lotus japonicus HOM05D003875 ORTHO05D004240 4.1e-50 202.6 284 43.0
Eucgr.C02832 Eucalyptus grandis HOM05D003875 ORTHO05D004240 2.0e-49 200.3 294 39.5
GSVIVG01035782001 Vitis vinifera HOM05D003875 ORTHO05D004240 7.7e-49 198.4 286 43.0
MBI01_g15494_MAGBIO Magnolia biondii HOM05D003875 ORTHO05D004240 1.0e-48 198.0 298 41.6
Haze_21599 Corylus avellana HOM05D003875 ORTHO05D004240 2.5e-47 193.4 273 41.4
PSO170G4839 Papaver somniferum HOM05D003875 ORTHO05D004240 7.2e-47 191.8 302 40.1
FAN24G0947 Fragaria x ananassa HOM05D003875 ORTHO05D004240 1.2e-46 191.0 249 47.4
EL10Ac2g02560 Beta vulgaris HOM05D003875 ORTHO05D004240 1.5e-44 184.1 283 37.1
AUR62032357 Chenopodium quinoa HOM05D003875 ORTHO05D004240 1.5e-44 184.1 286 40.2
AUR62041852 Chenopodium quinoa HOM05D003875 ORTHO05D004240 2.6e-44 183.3 280 38.9
Sc23g0006970 Simmondsia chinensis HOM05D003875 ORTHO05D004240 5.7e-44 182.2 295 36.9
PGR044G0870 Punica granatum HOM05D003875 ORTHO05D004240 1.7e-43 180.6 292 36.6
Aqoxy7G01948 Aquilegia oxysepala HOM05D003875 ORTHO05D004240 2.4e-42 176.8 297 38.7
FAN27G3504 Fragaria x ananassa HOM05D003875 ORTHO05D004240 6.9e-42 175.3 199 50.3
RhsimUnG0038500 Rhododendron simsii HOM05D003875 ORTHO05D004240 6.5e-40 168.7 114 75.4
Migut.A00291 Erythranthe guttata HOM05D003875 ORTHO05D004240 4.2e-39 166.0 306 38.6
FAN15G3748 Fragaria x ananassa HOM05D003875 ORTHO05D004240 1.4e-37 161.0 201 47.8
Ah.12g063710 Amaranthus hybridus HOM05D003875 ORTHO05D004240 2.3e-37 160.2 286 36.4
COL.COLO4_24012 Corchorus olitorius HOM05D003875 ORTHO05D004240 6.7e-37 158.7 267 40.8
Migut.A00295 Erythranthe guttata HOM05D003875 ORTHO05D004240 2.8e-35 153.3 280 40.4
TAR383G0600 Trochodendron aralioides HOM05D003875 ORTHO05D004240 3.7e-35 152.9 151 52.3
BcaC09g52043 Brassica carinata HOM05D003875 ORTHO05D004240 8.5e-32 141.7 296 35.8
Aa31sc251G50 Aethionema arabicum HOM05D003875 ORTHO05D004240 1.9e-31 140.6 298 35.6
AT4G29250 Arabidopsis thaliana HOM05D003875 ORTHO05D004240 1.9e-31 140.6 309 35.6
MSTRG.11750 Avicennia marina HOM05D003875 ORTHO05D004240 1.9e-31 140.6 129 52.7
C01p06480 Brassica napus HOM05D003875 ORTHO05D004240 5.5e-31 139.0 296 35.5
A01p05860 Brassica napus HOM05D003875 ORTHO05D004240 1.2e-30 137.9 297 36.0
BolC1t00642H Brassica oleracea HOM05D003875 ORTHO05D004240 1.6e-30 137.5 297 34.7
AL7G23210 Arabidopsis lyrata HOM05D003875 ORTHO05D004240 2.7e-30 136.7 294 35.7
PSO017G0824 Papaver somniferum HOM05D003875 ORTHO05D004240 4.7e-30 136.0 229 39.3
Thhalv10025128m.g Eutrema salsugineum HOM05D003875 ORTHO05D004240 2.3e-29 133.7 295 35.3
CARHR240470 Cardamine hirsuta HOM05D003875 ORTHO05D004240 4.0e-29 132.9 294 35.7
Carub.0007s1135 Capsella rubella HOM05D003875 ORTHO05D004240 5.2e-29 132.5 293 33.1
ATR0083G032 Amborella trichopoda HOM05D003875 ORTHO05D004240 1.2e-28 131.3 301 31.6
Sp7g30310 Schrenkiella parvula HOM05D003875 ORTHO05D004240 1.3e-27 127.9 296 34.1
DCAR_007686 Daucus carota HOM05D003875 ORTHO05D004240 1.1e-26 124.8 215 37.2
Rhsim02G0190700 Rhododendron simsii HOM05D003875 ORTHO05D004240 1.1e-26 124.8 84 76.2
RcHm_v2.0_Chr6g0298831 Rosa chinensis HOM05D003875 ORTHO05D004240 4.1e-26 122.9 113 54.0
Cpa.g.sc55.105 Carica papaya HOM05D003875 ORTHO05D004240 5.9e-25 119.0 171 43.9
THA.LOC104803631 Tarenaya hassleriana HOM05D003875 ORTHO05D004240 3.6e-22 109.8 313 31.0
MBI11_g42452_MAGBIO Magnolia biondii HOM05D003875 ORTHO05D004240 2.0e-20 104.0 297 29.3
SEGI_28149 Sequoiadendron giganteum HOM05D003875 ORTHO05D004240 4.8e-19 99.4 298 28.5
Thecc.05G286300 Theobroma cacao HOM05D003875 ORTHO05D004240 4.8e-19 99.4 306 25.5
ATR0665G289 Amborella trichopoda HOM05D003875 ORTHO05D004240 6.3e-19 99.0 299 28.4
Aqoxy2G03460 Aquilegia oxysepala HOM05D003875 ORTHO05D004240 1.4e-18 97.8 288 28.5
vmacro04772 Vaccinium macrocarpon HOM05D003875 ORTHO05D004240 1.4e-18 97.8 311 29.6
PGR083G0707 Punica granatum HOM05D003875 ORTHO05D004240 2.4e-18 97.1 292 28.1
FvH4_6g03120 Fragaria vesca HOM05D003875 ORTHO05D004240 7.0e-18 95.5 303 27.1
Nn1g02442 Nelumbo nucifera HOM05D003875 ORTHO05D004240 9.1e-18 95.1 293 27.6
MSTRG.11749 Avicennia marina HOM05D003875 ORTHO05D004240 1.2e-17 94.7 126 43.7
Atru.chr2.802 Acer truncatum HOM05D003875 ORTHO05D004240 2.0e-17 94.0 296 25.7
FAN05G4998 Fragaria x ananassa HOM05D003875 ORTHO05D004240 7.7e-17 92.0 297 26.6
arahy.Tifrunner.gnm1.ann1.SVL3YV Arachis hypogaea HOM05D003875 ORTHO05D004240 1.0e-16 91.7 309 28.5
Duzib128G0249 Durio zibethinus HOM05D003875 ORTHO05D004240 1.0e-16 91.7 306 24.5
CANSAT54G0990 Cannabis sativa HOM05D003875 ORTHO05D004240 1.3e-16 91.3 308 26.9
FAN05G1610 Fragaria x ananassa HOM05D003875 ORTHO05D004240 1.3e-16 91.3 298 25.8
FAN02G3152 Fragaria x ananassa HOM05D003875 ORTHO05D004240 3.8e-16 89.7 303 26.4
Lj1g0006899 Lotus japonicus HOM05D003875 ORTHO05D004240 3.8e-16 89.7 295 27.5
RcHm_v2.0_Chr3g0451351 Rosa chinensis HOM05D003875 ORTHO05D004240 6.5e-16 89.0 297 24.6
FAN09G4140 Fragaria x ananassa HOM05D003875 ORTHO05D004240 1.1e-15 88.2 296 26.0
MD12G1238900 Malus domestica HOM05D003875 ORTHO05D004240 1.1e-15 88.2 307 25.7
CsaV3_2G004210 Cucumis sativus L. HOM05D003875 ORTHO05D004240 1.9e-15 87.4 309 27.2
ECA246G2182 Erigeron canadensis HOM05D003875 ORTHO05D004240 1.9e-15 87.4 320 27.2
arahy.Tifrunner.gnm1.ann1.9VBI51 Arachis hypogaea HOM05D003875 ORTHO05D004240 3.2e-15 86.7 308 27.9
Glyma.19G244100 Glycine max HOM05D003875 ORTHO05D004240 3.2e-15 86.7 281 27.0
QL03p025049 Quercus lobata HOM05D003875 ORTHO05D004240 9.5e-15 85.1 302 26.5
Ah.06g192290 Amaranthus hybridus HOM05D003875 ORTHO05D004240 1.2e-14 84.7 322 28.6
RcHm_v2.0_Chr5g0046431 Rosa chinensis HOM05D003875 ORTHO05D004240 1.6e-14 84.3 310 25.5
Glyma.03G246600 Glycine max HOM05D003875 ORTHO05D004240 2.1e-14 84.0 281 27.8
COL.COLO4_15311 Corchorus olitorius HOM05D003875 ORTHO05D004240 2.8e-14 83.6 305 23.3
MELO3C004373.2 Cucumis melo HOM05D003875 ORTHO05D004240 2.8e-14 83.6 307 30.0
Ciclev10001131m.g Citrus clementina HOM05D003875 ORTHO05D004240 4.7e-14 82.8 303 25.4
Cpa.g.sc117.81 Carica papaya HOM05D003875 ORTHO05D004240 8.0e-14 82.0 298 25.2
ClCG02G016560 Citrullus lanatus HOM05D003875 ORTHO05D004240 1.0e-13 81.6 305 26.2
Prupe.6G341800 Prunus persica HOM05D003875 ORTHO05D004240 1.0e-13 81.6 304 26.0
Actinidia17832 Actinidia chinensis HOM05D003875 ORTHO05D004240 1.4e-13 81.3 149 36.2
CiPaw.07G065600 Carya illinoinensis HOM05D003875 ORTHO05D004240 1.4e-13 81.3 305 26.9
Ca_09416_v3 Cicer arietinum L. HOM05D003875 ORTHO05D004240 1.4e-13 81.3 294 25.5
Sed0006473 Sechium edule HOM05D003875 ORTHO05D004240 1.4e-13 81.3 301 28.2
Psat3g007800 Pisum sativum HOM05D003875 ORTHO05D004240 1.8e-13 80.9 270 27.0
Potri.013G039700 Populus trichocarpa HOM05D003875 ORTHO05D004240 1.8e-13 80.9 296 26.4
Haze_11904 Corylus avellana HOM05D003875 ORTHO05D004240 2.3e-13 80.5 305 26.6
Oeu021868.1 Olea europaea HOM05D003875 ORTHO05D004240 2.3e-13 80.5 284 26.4
EL10Ac4g09121 Beta vulgaris HOM05D003875 ORTHO05D004240 3.0e-13 80.1 320 26.6
Potri.005G052200 Populus trichocarpa HOM05D003875 ORTHO05D004240 3.0e-13 80.1 292 24.7
Thhalv10004237m.g Eutrema salsugineum HOM05D003875 ORTHO05D004240 1.5e-12 77.8 290 27.2
Lsat_1_v5_gn_6_110001 Lactuca sativa HOM05D003875 ORTHO05D004240 2.0e-12 77.4 316 24.7
CARHR185110 Cardamine hirsuta HOM05D003875 ORTHO05D004240 2.6e-12 77.0 300 24.7
Lj6A384T15 Lonicera japonica HOM05D002298 ORTHO05D002415 2.6e-12 77.0 272 27.6
Medtr7g114960 Medicago truncatula HOM05D003875 ORTHO05D004240 2.6e-12 77.0 297 26.9
Sp2g20200 Schrenkiella parvula HOM05D003875 ORTHO05D004240 2.6e-12 77.0 294 25.9
HanXRQChr05g0149281 Helianthus annuus HOM05D003875 ORTHO05D004240 7.5e-12 75.5 304 24.3
Lalb_Chr06g0168041 Lupinus albus HOM05D003875 ORTHO05D004240 9.8e-12 75.1 286 24.8
RcHm_v2.0_Chr6g0298841 Rosa chinensis HOM05D003875 ORTHO05D004240 1.7e-11 74.3 115 42.6
Aa31LG11G8730 Aethionema arabicum HOM05D003875 ORTHO05D004240 2.8e-11 73.6 287 25.8
VMungo0540G0993 Vigna mungo HOM05D003875 ORTHO05D004240 2.8e-11 73.6 283 26.9
Rhsim05G0161300 Rhododendron simsii HOM05D003875 ORTHO05D004240 3.7e-11 73.2 304 26.6
MSTRG.28021 Avicennia marina HOM05D003875 ORTHO05D004240 4.9e-11 72.8 292 22.9
Psat3g007400 Pisum sativum HOM05D003875 ORTHO05D004240 4.9e-11 72.8 266 26.3
Lalb_Chr23g0270021 Lupinus albus HOM05D002298 ORTHO05D002415 8.3e-11 72.0 288 26.7
PSO210G4992 Papaver somniferum HOM05D003875 ORTHO05D004240 1.1e-10 71.6 288 25.7
Phvul.006G101000 Phaseolus vulgaris HOM05D003875 ORTHO05D004240 1.1e-10 71.6 283 25.1
Zm00001eb057000 Zea mays HOM05D003875 ORTHO05D004240 1.1e-10 71.6 280 26.4
HanXRQChr11g0344311 Helianthus annuus HOM05D002298 ORTHO05D002415 2.4e-10 70.5 308 24.7
PSO170G1855 Papaver somniferum HOM05D003875 ORTHO05D004240 2.4e-10 70.5 288 24.3
BcaB07g34182 Brassica carinata HOM05D003875 ORTHO05D004240 3.1e-10 70.1 299 25.8
C02p57750 Brassica napus HOM05D003875 ORTHO05D004240 3.1e-10 70.1 295 26.1
BcaC03g17761 Brassica carinata HOM05D003875 ORTHO05D004240 5.4e-10 69.3 294 25.2
BolC2t11847H Brassica oleracea HOM05D003875 ORTHO05D004240 5.4e-10 69.3 294 25.2
Oeu056422.1 Olea europaea HOM05D002298 ORTHO05D002415 5.4e-10 69.3 271 26.6
Sed0015532 Sechium edule HOM05D002298 ORTHO05D002415 7.0e-10 68.9 293 27.6
MSTRG.4242 Avicennia marina HOM05D002298 ORTHO05D002415 1.6e-09 67.8 288 27.1
Glyma.06G097300 Glycine max HOM05D002298 ORTHO05D002415 1.6e-09 67.8 293 25.3
SGA_v2.0_scaffold329G48858 Striga asiatica HOM05D003875 ORTHO05D004240 1.6e-09 67.8 272 26.1
Thecc.08G071600 Theobroma cacao HOM05D002298 ORTHO05D002415 2.0e-09 67.4 290 27.9
Carub.0006s2571 Capsella rubella HOM05D003875 ORTHO05D004240 2.7e-09 67.0 290 25.9
HanXRQChr01g0022181 Helianthus annuus HOM05D002298 ORTHO05D002415 3.5e-09 66.6 296 25.7
AUR62004931 Chenopodium quinoa HOM05D003875 ORTHO05D004240 4.5e-09 66.2 155 27.7
AUR62001021 Chenopodium quinoa HOM05D003875 ORTHO05D004240 5.9e-09 65.9 155 29.0
MELO3C003520.2 Cucumis melo HOM05D002298 ORTHO05D002415 7.8e-09 65.5 286 26.9
Lj5g0011660 Lotus japonicus HOM05D002298 ORTHO05D002415 1.0e-08 65.1 281 24.9
THA.LOC104818632 Tarenaya hassleriana HOM05D003875 ORTHO05D004240 1.3e-08 64.7 295 23.7
Cfa014957 Carpinus fangiana HOM05D002298 ORTHO05D002415 1.7e-08 64.3 300 24.0
COL.COLO4_35253 Corchorus olitorius HOM05D002298 ORTHO05D002415 2.3e-08 63.9 288 25.7
SalBow3G3285 Salvia bowleyana HOM05D002298 ORTHO05D002415 2.9e-08 63.5 278 27.0
arahy.Tifrunner.gnm1.ann1.ZI6CNN Arachis hypogaea HOM05D002298 ORTHO05D002415 3.8e-08 63.2 308 26.3
HPP92_026606 Vanilla planifolia HOM05D003875 ORTHO05D004240 5.0e-08 62.8 284 26.4
Oeu063465.1 Olea europaea HOM05D002298 ORTHO05D002415 8.6e-08 62.0 277 25.6
ClCG11G014610 Citrullus lanatus HOM05D002298 ORTHO05D002415 1.1e-07 61.6 294 26.2
Cc03_g08410 Coffea canephora HOM05D002298 ORTHO05D002415 2.5e-07 60.5 285 27.4
Rhsim02G0190300 Rhododendron simsii HOM05D003875 ORTHO05D004240 2.5e-07 60.5 34 88.2
Sabra05G0045900 Salix brachista HOM05D003875 ORTHO05D004240 2.5e-07 60.5 144 27.1
Carub.0003s2415 Capsella rubella HOM05D002298 ORTHO05D002415 5.6e-07 59.3 269 24.9
CsaV3_3G048020 Cucumis sativus L. HOM05D002298 ORTHO05D002415 2.1e-06 57.4 289 25.6
Lj6P272T7 Lonicera japonica HOM05D003875 ORTHO05D004240 2.1e-06 57.4 184 26.1
Lj7P463T13 Lonicera japonica HOM05D000079 ORTHO05D000211 2.1e-06 57.4 160 26.9
THA.LOC104804802 Tarenaya hassleriana HOM05D002298 ORTHO05D002415 2.1e-06 57.4 277 23.8
Thecc.04G195800 Theobroma cacao HOM05D002298 ORTHO05D002415 2.8e-06 57.0 275 24.0
TWI32G0055 Tripterygium wilfordii HOM05D000079 ORTHO05D000211 3.6e-06 56.6 151 25.8
Glyma.17G061100 Glycine max HOM05D000079 ORTHO05D000211 4.7e-06 56.2 207 24.2
Cc02_g30450 Coffea canephora HOM05D003875 ORTHO05D004240 6.1e-06 55.8 166 26.5


User provided reference genes

Program Settings