Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0191400 Rhododendron simsii HOM05D007217 ORTHO05D009092 7.9e-155 550.4 284 100.0
Rhsim09G0182200 Rhododendron simsii HOM05D007217 ORTHO05D009092 1.4e-66 257.3 133 99.2
Rhsim04G0112200 Rhododendron simsii HOM05D007217 ORTHO05D009092 7.1e-55 218.4 156 76.3
Rhsim05G0134700 Rhododendron simsii HOM05D007217 ORTHO05D009092 3.2e-47 193.0 115 89.6
Dinv20263 Davidia involucrata HOM05D007217 ORTHO05D009092 5.5e-47 192.2 137 70.1
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 4.3e-44 182.6 109 87.2
Dinv01436 Davidia involucrata HOM05D007217 ORTHO05D009092 1.1e-34 151.4 94 80.9
Peaxi162Scf00586g00008 Petunia axillaris HOM05D007217 ORTHO05D009092 1.3e-32 144.4 128 60.2
GSVIVG01019606001 Vitis vinifera HOM05D007217 ORTHO05D009092 1.7e-32 144.1 114 65.8
Sopen01g003160 Solanum pennellii HOM05D007217 ORTHO05D009092 2.2e-32 143.7 121 60.3
PGSC0003DMG400021318 Solanum tuberosum HOM05D007217 ORTHO05D009092 3.8e-32 142.9 121 60.3
Solyc01g007180.3 Solanum lycopersicum HOM05D007217 ORTHO05D009092 1.4e-31 141.0 121 59.5
Cpa.g.sc64.50 Carica papaya HOM05D007217 ORTHO05D009092 2.5e-31 140.2 115 61.7
MSTRG.12451 Avicennia marina HOM05D007217 ORTHO05D009092 3.6e-30 136.3 133 54.9
TWI09G0788 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 1.0e-29 134.8 121 57.9
TWI09G0397 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 3.0e-29 133.3 121 57.9
CiPaw.10G112300 Carya illinoinensis HOM05D007217 ORTHO05D009092 3.9e-29 132.9 121 58.7
Thecc.06G135800 Theobroma cacao HOM05D007217 ORTHO05D009092 6.7e-29 132.1 122 57.4
Duzib235G1460 Durio zibethinus HOM05D007217 ORTHO05D009092 8.7e-29 131.7 122 59.0
Gorai.010G170900 Gossypium raimondii HOM05D007217 ORTHO05D009092 1.5e-28 131.0 126 54.8
Atru.chr10.619 Acer truncatum HOM05D007217 ORTHO05D009092 1.9e-28 130.6 120 60.0
Gohir.D06G146500 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.9e-28 130.6 118 57.6
Cc01_g06080 Coffea canephora HOM05D007217 ORTHO05D009092 2.5e-28 130.2 142 54.2
Gohir.A06G140100 Gossypium hirsutum HOM05D007217 ORTHO05D009092 4.3e-28 129.4 171 44.4
QL05p062902 Quercus lobata HOM05D007217 ORTHO05D009092 5.7e-28 129.0 116 58.6
THA.LOC104808222 Tarenaya hassleriana HOM05D007217 ORTHO05D009092 9.7e-28 128.3 119 52.9
ClCG07G002120 Citrullus lanatus HOM05D007217 ORTHO05D009092 1.3e-27 127.9 118 56.8
Manes.02G204000 Manihot esculenta HOM05D007217 ORTHO05D009092 1.3e-27 127.9 121 52.1
TAR722G0002 Trochodendron aralioides HOM05D007217 ORTHO05D009092 1.6e-27 127.5 100 65.0
RcHm_v2.0_Chr5g0019241 Rosa chinensis HOM05D007217 ORTHO05D009092 2.8e-27 126.7 120 52.5
Ciclev10029535m.g Citrus clementina HOM05D007217 ORTHO05D009092 4.8e-27 125.9 118 56.8
Oeu043290.1 Olea europaea HOM05D007217 ORTHO05D009092 6.3e-27 125.6 125 53.6
Ciclev10018165m.g Citrus clementina HOM05D007217 ORTHO05D009092 8.2e-27 125.2 116 56.0
Migut.N02356 Erythranthe guttata HOM05D007217 ORTHO05D009092 8.2e-27 125.2 128 53.1
Sed0002565 Sechium edule HOM05D007217 ORTHO05D009092 1.8e-26 124.0 120 55.0
Prupe.4G105800 Prunus persica HOM05D007217 ORTHO05D009092 6.9e-26 122.1 117 54.7
Eucgr.E04359 Eucalyptus grandis HOM05D007217 ORTHO05D009092 2.0e-25 120.6 119 52.9
DCAR_001337 Daucus carota HOM05D007217 ORTHO05D009092 2.6e-25 120.2 120 55.0
Nn7g37971 Nelumbo nucifera HOM05D007217 ORTHO05D009092 2.6e-25 120.2 125 52.8
Potri.003G149100 Populus trichocarpa HOM05D007217 ORTHO05D009092 2.6e-25 120.2 117 53.0
Sabra01G0058500 Salix brachista HOM05D007217 ORTHO05D009092 2.6e-25 120.2 122 50.8
Sc06g0009730 Simmondsia chinensis HOM05D007217 ORTHO05D009092 2.6e-25 120.2 112 55.4
MELO3C015565.2 Cucumis melo HOM05D007217 ORTHO05D009092 4.5e-25 119.4 117 53.0
FvH4_3g11820 Fragaria vesca HOM05D007217 ORTHO05D009092 7.7e-25 118.6 110 54.5
SGA_v2.0_scaffold3G01474 Striga asiatica HOM05D007217 ORTHO05D009092 1.3e-24 117.9 116 53.4
CsaV3_3G030060 Cucumis sativus L. HOM05D007217 ORTHO05D009092 2.2e-24 117.1 129 51.2
CsaV3_4G011770 Cucumis sativus L. HOM05D007217 ORTHO05D009092 2.2e-24 117.1 119 53.8
Hma1.2p1_0074F.1_g039010 Hydrangea macrophylla HOM05D007217 ORTHO05D009092 2.2e-24 117.1 109 58.7
unitig_749.g13716 Utricularia gibba HOM05D007217 ORTHO05D009092 2.2e-24 117.1 128 50.8
MELO3C022720.2 Cucumis melo HOM05D007217 ORTHO05D009092 2.9e-24 116.7 119 52.9
Eucgr.E02022 Eucalyptus grandis HOM05D007217 ORTHO05D009092 3.8e-24 116.3 109 56.9
Lj5g0013157 Lotus japonicus HOM05D007217 ORTHO05D009092 5.0e-24 115.9 119 51.3
MBI18_g37406_MAGBIO Magnolia biondii HOM05D007217 ORTHO05D009092 8.5e-24 115.2 111 52.3
Lsat_1_v5_gn_4_36120 Lactuca sativa HOM05D007217 ORTHO05D009092 1.1e-23 114.8 121 49.6
Medtr8g011490 Medicago truncatula HOM05D007217 ORTHO05D009092 1.1e-23 114.8 113 52.2
DCAR_031675 Daucus carota HOM05D007217 ORTHO05D009092 1.4e-23 114.4 123 54.5
Lj6g0006317 Lotus japonicus HOM05D007217 ORTHO05D009092 1.9e-23 114.0 117 51.3
MD05G1258900 Malus domestica HOM05D007217 ORTHO05D009092 1.9e-23 114.0 117 52.1
Glyma.08G176100 Glycine max HOM05D007217 ORTHO05D009092 7.2e-23 112.1 117 50.4
Lalb_Chr16g0392431 Lupinus albus HOM05D007217 ORTHO05D009092 9.4e-23 111.7 114 47.4
MD10G1238500 Malus domestica HOM05D007217 ORTHO05D009092 9.4e-23 111.7 117 50.4
Potri.001G081300 Populus trichocarpa HOM05D007217 ORTHO05D009092 9.4e-23 111.7 122 48.4
Nitab4.5_0002858g0010 Nicotiana tabacum HOM05D007217 ORTHO05D009092 1.2e-22 111.3 96 58.3
SalBow8G5173 Salvia bowleyana HOM05D007217 ORTHO05D009092 1.6e-22 110.9 124 47.6
Glyma.15G250400 Glycine max HOM05D007217 ORTHO05D009092 2.1e-22 110.5 117 49.6
Lsat_1_v5_gn_7_8820 Lactuca sativa HOM05D007217 ORTHO05D009092 3.6e-22 109.8 133 47.4
HanXRQChr04g0107331 Helianthus annuus HOM05D007217 ORTHO05D009092 4.6e-22 109.4 138 46.4
Actinidia38172 Actinidia chinensis HOM05D007217 ORTHO05D009092 1.0e-21 108.2 73 72.6
Psat0s5329g0080 Pisum sativum HOM05D007217 ORTHO05D009092 2.3e-21 107.1 125 45.6
VMungo1383G0797 Vigna mungo HOM05D007217 ORTHO05D009092 3.9e-21 106.3 109 51.4
AL2G41250 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 1.1e-20 104.8 119 45.4
AT1G80245 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 1.1e-20 104.8 119 44.5
arahy.Tifrunner.gnm1.ann1.3NP1QY Arachis hypogaea HOM05D007217 ORTHO05D009092 1.1e-20 104.8 111 49.5
EL10Ac9g22805 Beta vulgaris HOM05D007217 ORTHO05D009092 1.1e-20 104.8 92 58.7
GSVIVG01013634001 Vitis vinifera HOM05D007217 ORTHO05D009092 1.5e-20 104.4 99 58.6
arahy.Tifrunner.gnm1.ann1.TIKV1F Arachis hypogaea HOM05D007217 ORTHO05D009092 3.3e-20 103.2 106 50.9
Phvul.008G108200 Phaseolus vulgaris HOM05D007217 ORTHO05D009092 3.3e-20 103.2 106 50.0
AT4G00695 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 5.7e-20 102.4 107 51.4
arahy.Tifrunner.gnm1.ann1.Z0SJI2 Arachis hypogaea HOM05D007217 ORTHO05D009092 5.7e-20 102.4 106 49.1
CARHR074240 Cardamine hirsuta HOM05D007217 ORTHO05D009092 7.4e-20 102.1 122 45.9
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 1.3e-19 101.3 108 48.1
Aa31LG4G550 Aethionema arabicum HOM05D002649 ORTHO05D002838 1.7e-19 100.9 117 46.2
Carub.0007s3329 Capsella rubella HOM05D007217 ORTHO05D009092 1.7e-19 100.9 103 47.6
BcaC03g15989 Brassica carinata HOM05D007217 ORTHO05D009092 2.2e-19 100.5 106 49.1
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 4.8e-19 99.4 117 43.6
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 1.1e-18 98.2 106 48.1
Gohir.A10G046700 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.1e-18 98.2 87 57.5
Gohir.D10G048000 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.1e-18 98.2 121 47.1
Gorai.011G051100 Gossypium raimondii HOM05D007217 ORTHO05D009092 1.1e-18 98.2 121 47.1
AL7G47090 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 1.4e-18 97.8 118 44.9
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 1.8e-18 97.4 106 48.1
Sp5g35560 Schrenkiella parvula HOM05D007217 ORTHO05D009092 2.4e-18 97.1 117 41.0
Nitab4.5_0004758g0070 Nicotiana tabacum HOM05D007217 ORTHO05D009092 1.2e-17 94.7 127 44.1
Thhalv10019705m.g Eutrema salsugineum HOM05D007217 ORTHO05D009092 3.4e-17 93.2 104 46.2
AUR62017567 Chenopodium quinoa HOM05D007217 ORTHO05D009092 5.9e-17 92.4 127 41.7
Sp1g21760 Schrenkiella parvula HOM05D007217 ORTHO05D009092 7.7e-17 92.0 119 42.0
FAN21G1503 Fragaria x ananassa HOM05D007217 ORTHO05D009092 5.0e-16 89.4 110 45.5
FAN16G2896 Fragaria x ananassa HOM05D007217 ORTHO05D009092 8.5e-16 88.6 110 46.4
Psat4g125640 Pisum sativum HOM05D007217 ORTHO05D009092 1.2e-14 84.7 125 40.0
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 1.0e-13 81.6 136 37.5
COL.COLO4_30930 Corchorus olitorius HOM05D007217 ORTHO05D009092 1.4e-13 81.3 57 73.7
HPP92_002517 Vanilla planifolia HOM05D007217 ORTHO05D009092 1.5e-12 77.8 88 48.9
HPP92_002534 Vanilla planifolia HOM05D007217 ORTHO05D009092 1.5e-12 77.8 88 48.9
Hund24191 Selenicereus undatus HOM05D007217 ORTHO05D009092 1.3e-11 74.7 49 71.4
CDE03G0351 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 5.9e-09 65.9 73 50.7
ATR0763G267 Amborella trichopoda HOM05D007217 ORTHO05D009092 7.7e-09 65.5 72 48.6
CDE03G0339 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 7.7e-09 65.5 73 49.3
C02p14430 Brassica napus HOM05D007217 ORTHO05D009092 1.0e-08 65.1 57 52.6
BolC2t07567H Brassica oleracea HOM05D007217 ORTHO05D009092 1.0e-08 65.1 57 52.6
Zm00001eb228930 Zea mays HOM05D007217 ORTHO05D009092 6.5e-08 62.4 77 45.5
Nitab4.5_0000978g0250 Nicotiana tabacum HOM05D007217 ORTHO05D009092 2.7e-06 57.0 109 34.9


User provided reference genes

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