Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0190800 Rhododendron simsii HOM05D003875 ORTHO05D004240 2.2e-79 298.9 148 100.0
Rhsim02G0189500 Rhododendron simsii HOM05D003875 ORTHO05D004240 2.8e-55 218.8 156 76.3
Rhsim02G0189900 Rhododendron simsii HOM05D003875 ORTHO05D004240 2.1e-50 202.6 128 83.6
Rhsim02G0190300 Rhododendron simsii HOM05D003875 ORTHO05D004240 8.0e-50 200.7 128 82.8
Rhsim02G0189600 Rhododendron simsii HOM05D003875 ORTHO05D004240 6.8e-49 197.6 123 83.7
Actinidia13268 Actinidia chinensis HOM05D003875 ORTHO05D004240 1.5e-48 196.4 156 66.7
GSVIVG01035782001 Vitis vinifera HOM05D003875 ORTHO05D004240 5.0e-44 181.4 153 61.4
Manes.03G018500 Manihot esculenta HOM05D003875 ORTHO05D004240 1.0e-41 173.7 156 57.7
Lj4g0004496 Lotus japonicus HOM05D003875 ORTHO05D004240 1.5e-40 169.9 152 59.9
Atru.chr7.2231 Acer truncatum HOM05D003875 ORTHO05D004240 1.3e-39 166.8 155 56.1
Atru.chr7.2352 Acer truncatum HOM05D003875 ORTHO05D004240 6.3e-39 164.5 153 56.2
TWI34G0133 Tripterygium wilfordii HOM05D003875 ORTHO05D004240 1.1e-38 163.7 157 56.7
Sabra18G0033500 Salix brachista HOM05D003875 ORTHO05D004240 2.4e-38 162.5 152 58.6
Potri.018G032700 Populus trichocarpa HOM05D003875 ORTHO05D004240 4.1e-38 161.8 151 58.3
Ca_12920_v3 Cicer arietinum L. HOM05D003875 ORTHO05D004240 5.4e-38 161.4 152 58.6
RhsimUnG0218800 Rhododendron simsii HOM05D003875 ORTHO05D004240 5.4e-38 161.4 124 71.0
Oeu030072.1 Olea europaea HOM05D003875 ORTHO05D004240 7.0e-38 161.0 153 54.9
TPR.G15662 Trifolium pratense HOM05D003875 ORTHO05D004240 7.0e-38 161.0 152 57.9
Medtr1g011660 Medicago truncatula HOM05D003875 ORTHO05D004240 1.2e-37 160.2 152 57.2
Psat6g030240 Pisum sativum HOM05D003875 ORTHO05D004240 1.6e-37 159.8 156 54.5
QL12p024553 Quercus lobata HOM05D003875 ORTHO05D004240 4.5e-37 158.3 152 55.9
Dinv11597 Davidia involucrata HOM05D003875 ORTHO05D004240 1.0e-36 157.1 153 56.2
CiPaw.08G014300 Carya illinoinensis HOM05D003875 ORTHO05D004240 2.9e-36 155.6 154 53.9
Glyma.17G206400 Glycine max HOM05D003875 ORTHO05D004240 6.6e-36 154.5 153 56.2
RhsimUnG0038600 Rhododendron simsii HOM05D003875 ORTHO05D004240 6.6e-36 154.5 82 92.7
Ciclev10008314m.g Citrus clementina HOM05D003875 ORTHO05D004240 7.3e-35 151.0 155 53.5
arahy.Tifrunner.gnm1.ann1.R0TJM1 Arachis hypogaea HOM05D003875 ORTHO05D004240 2.1e-34 149.4 152 52.6
Cc11_g01490 Coffea canephora HOM05D003875 ORTHO05D004240 2.8e-34 149.1 152 52.0
Phvul.001G054300 Phaseolus vulgaris HOM05D003875 ORTHO05D004240 2.8e-34 149.1 156 52.6
Carub.0007s1135 Capsella rubella HOM05D003875 ORTHO05D004240 3.6e-34 148.7 163 48.5
TAR383G0600 Trochodendron aralioides HOM05D003875 ORTHO05D004240 4.7e-34 148.3 153 52.9
MSTRG.11750 Avicennia marina HOM05D003875 ORTHO05D004240 8.0e-34 147.5 153 51.6
FvH4_2g29810 Fragaria vesca HOM05D003875 ORTHO05D004240 1.0e-33 147.1 152 52.6
FAN24G0947 Fragaria x ananassa HOM05D003875 ORTHO05D004240 1.8e-33 146.4 150 52.7
THA.LOC104803631 Tarenaya hassleriana HOM05D003875 ORTHO05D004240 2.3e-33 146.0 156 51.3
Lalb_Chr04g0257471 Lupinus albus HOM05D003875 ORTHO05D004240 3.0e-33 145.6 154 53.2
AT4G29250 Arabidopsis thaliana HOM05D003875 ORTHO05D004240 4.0e-33 145.2 163 47.9
Prupe.1G471500 Prunus persica HOM05D003875 ORTHO05D004240 4.0e-33 145.2 157 54.1
arahy.Tifrunner.gnm1.ann1.3Z1QL9 Arachis hypogaea HOM05D003875 ORTHO05D004240 6.8e-33 144.4 155 51.6
MD08G1141600 Malus domestica HOM05D003875 ORTHO05D004240 6.8e-33 144.4 157 52.2
BcaC09g52043 Brassica carinata HOM05D003875 ORTHO05D004240 8.9e-33 144.1 158 48.7
Cfa013196 Carpinus fangiana HOM05D003491 ORTHO05D004293 8.9e-33 144.1 141 56.0
AL7G23210 Arabidopsis lyrata HOM05D003875 ORTHO05D004240 2.6e-32 142.5 163 46.0
Haze_21599 Corylus avellana HOM05D003875 ORTHO05D004240 4.4e-32 141.7 122 59.8
Migut.A00291 Erythranthe guttata HOM05D003875 ORTHO05D004240 4.4e-32 141.7 156 50.6
Thhalv10025128m.g Eutrema salsugineum HOM05D003875 ORTHO05D004240 4.4e-32 141.7 164 46.3
EL10Ac2g02560 Beta vulgaris HOM05D003875 ORTHO05D004240 5.8e-32 141.4 156 48.1
A01p05860 Brassica napus HOM05D003875 ORTHO05D004240 5.8e-32 141.4 158 47.5
FAN15G3748 Fragaria x ananassa HOM05D003875 ORTHO05D004240 5.8e-32 141.4 151 50.3
Aqoxy7G01948 Aquilegia oxysepala HOM05D003875 ORTHO05D004240 7.5e-32 141.0 152 48.0
PGR044G0870 Punica granatum HOM05D003875 ORTHO05D004240 7.5e-32 141.0 160 51.2
MBI01_g15494_MAGBIO Magnolia biondii HOM05D003875 ORTHO05D004240 9.8e-32 140.6 153 51.0
Cpa.g.sc55.106 Carica papaya HOM05D003875 ORTHO05D004240 1.3e-31 140.2 152 48.7
C01p06480 Brassica napus HOM05D003875 ORTHO05D004240 1.7e-31 139.8 158 46.8
BolC1t00642H Brassica oleracea HOM05D003875 ORTHO05D004240 2.2e-31 139.4 158 46.8
RhsimUnG0144400 Rhododendron simsii HOM05D003875 ORTHO05D004240 2.2e-31 139.4 94 76.6
VMungo0647G0068 Vigna mungo HOM05D003875 ORTHO05D004240 2.9e-31 139.0 157 51.0
CARHR240470 Cardamine hirsuta HOM05D003875 ORTHO05D004240 4.9e-31 138.3 163 45.4
Sp7g30310 Schrenkiella parvula HOM05D003875 ORTHO05D004240 8.3e-31 137.5 163 45.4
Duzib168G0377 Durio zibethinus HOM05D003875 ORTHO05D004240 4.1e-30 135.2 149 47.7
RcHm_v2.0_Chr6g0298831 Rosa chinensis HOM05D003875 ORTHO05D004240 4.1e-30 135.2 151 50.3
Eucgr.C02832 Eucalyptus grandis HOM05D003875 ORTHO05D004240 3.0e-28 129.0 153 47.7
CANSAT64G0144 Cannabis sativa HOM05D003875 ORTHO05D004240 3.9e-28 128.6 178 44.9
Thecc.09G147200 Theobroma cacao HOM05D003875 ORTHO05D004240 1.1e-27 127.1 153 47.7
COL.COLO4_24012 Corchorus olitorius HOM05D003875 ORTHO05D004240 9.5e-27 124.0 152 43.4
DCAR_007686 Daucus carota HOM05D003875 ORTHO05D004240 3.6e-26 122.1 154 47.4
Aa31sc251G50 Aethionema arabicum HOM05D003875 ORTHO05D004240 8.0e-26 120.9 188 36.7
Migut.A00295 Erythranthe guttata HOM05D003875 ORTHO05D004240 3.4e-24 115.5 136 49.3
Ah.12g063710 Amaranthus hybridus HOM05D003875 ORTHO05D004240 2.2e-23 112.8 136 44.9
PSO017G0824 Papaver somniferum HOM05D003875 ORTHO05D004240 4.6e-21 105.1 158 41.1
PSO170G4839 Papaver somniferum HOM05D003875 ORTHO05D004240 6.0e-21 104.8 158 43.0
ATR0665G289 Amborella trichopoda HOM05D003875 ORTHO05D004240 1.3e-20 103.6 148 40.5
MBI11_g42452_MAGBIO Magnolia biondii HOM05D003875 ORTHO05D004240 5.1e-20 101.7 153 35.9
Sc23g0006970 Simmondsia chinensis HOM05D003875 ORTHO05D004240 3.3e-19 99.0 125 44.0
SalBow4G0786 Salvia bowleyana HOM05D003875 ORTHO05D004240 7.3e-19 97.8 148 37.8
HPP92_026606 Vanilla planifolia HOM05D003875 ORTHO05D004240 9.5e-19 97.4 162 37.0
SalBow4G1128 Salvia bowleyana HOM05D003875 ORTHO05D004240 1.6e-18 96.7 148 37.2
ATR0083G032 Amborella trichopoda HOM05D003875 ORTHO05D004240 2.1e-18 96.3 152 38.2
Actinidia17832 Actinidia chinensis HOM05D003875 ORTHO05D004240 2.8e-18 95.9 156 34.0
GSVIVG01021823001 Vitis vinifera HOM05D003875 ORTHO05D004240 3.6e-18 95.5 153 35.3
SGA_v2.0_scaffold329G48858 Striga asiatica HOM05D003875 ORTHO05D004240 8.1e-18 94.4 148 37.2
Migut.N01908 Erythranthe guttata HOM05D003875 ORTHO05D004240 2.3e-17 92.8 149 38.3
Aqoxy2G03460 Aquilegia oxysepala HOM05D003875 ORTHO05D004240 4.0e-17 92.0 157 36.3
Haze_11904 Corylus avellana HOM05D003875 ORTHO05D004240 4.0e-17 92.0 159 33.3
CiPaw.07G065600 Carya illinoinensis HOM05D003875 ORTHO05D004240 1.2e-16 90.5 154 35.7
Potri.005G052200 Populus trichocarpa HOM05D003875 ORTHO05D004240 1.5e-16 90.1 157 33.1
TAR365G0792 Trochodendron aralioides HOM05D003875 ORTHO05D004240 2.0e-16 89.7 153 34.0
MD12G1238900 Malus domestica HOM05D003875 ORTHO05D004240 2.6e-16 89.4 154 37.0
Cpa.g.sc117.81 Carica papaya HOM05D003875 ORTHO05D004240 4.4e-16 88.6 145 34.5
Potri.013G039700 Populus trichocarpa HOM05D003875 ORTHO05D004240 4.4e-16 88.6 160 33.1
Lj1g0006899 Lotus japonicus HOM05D003875 ORTHO05D004240 5.8e-16 88.2 155 31.0
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 7.5e-16 87.8 52 84.6
HPP92_024851 Vanilla planifolia HOM05D003875 ORTHO05D004240 7.5e-16 87.8 127 38.6
Sc14g0006630 Simmondsia chinensis HOM05D003875 ORTHO05D004240 1.3e-15 87.0 153 32.7
MSTRG.28021 Avicennia marina HOM05D003875 ORTHO05D004240 1.7e-15 86.7 147 32.7
VMungo0540G0993 Vigna mungo HOM05D003875 ORTHO05D004240 2.2e-15 86.3 153 32.0
ECA246G2182 Erigeron canadensis HOM05D003875 ORTHO05D004240 3.7e-15 85.5 163 31.9
SEGI_28149 Sequoiadendron giganteum HOM05D003875 ORTHO05D004240 3.7e-15 85.5 153 33.3
Thecc.05G286300 Theobroma cacao HOM05D003875 ORTHO05D004240 4.9e-15 85.1 155 32.3
PGR083G0707 Punica granatum HOM05D003875 ORTHO05D004240 1.9e-14 83.2 151 34.4
QL03p025049 Quercus lobata HOM05D003875 ORTHO05D004240 1.9e-14 83.2 159 32.1
Phvul.006G101000 Phaseolus vulgaris HOM05D003875 ORTHO05D004240 2.4e-14 82.8 154 31.8
Thhalv10004237m.g Eutrema salsugineum HOM05D003875 ORTHO05D004240 3.2e-14 82.4 154 29.2
Sabra05G0045900 Salix brachista HOM05D003875 ORTHO05D004240 3.2e-14 82.4 156 32.7
Ciclev10001131m.g Citrus clementina HOM05D003875 ORTHO05D004240 4.1e-14 82.0 145 33.1
COL.COLO4_15311 Corchorus olitorius HOM05D003875 ORTHO05D004240 4.1e-14 82.0 155 31.0
ClCG02G016560 Citrullus lanatus HOM05D003875 ORTHO05D004240 5.4e-14 81.6 162 32.7
Nn1g02442 Nelumbo nucifera HOM05D003875 ORTHO05D004240 5.4e-14 81.6 154 32.5
Atru.chr2.802 Acer truncatum HOM05D003875 ORTHO05D004240 7.1e-14 81.3 149 36.2
Duzib128G0249 Durio zibethinus HOM05D003875 ORTHO05D004240 7.1e-14 81.3 153 31.4
THA.LOC104818632 Tarenaya hassleriana HOM05D003875 ORTHO05D004240 7.1e-14 81.3 146 32.2
CARHR185110 Cardamine hirsuta HOM05D003875 ORTHO05D004240 1.6e-13 80.1 144 32.6
FAN05G1610 Fragaria x ananassa HOM05D003875 ORTHO05D004240 1.6e-13 80.1 160 31.9
FAN05G4998 Fragaria x ananassa HOM05D003875 ORTHO05D004240 1.6e-13 80.1 160 31.9
PSO170G1855 Papaver somniferum HOM05D003875 ORTHO05D004240 2.7e-13 79.3 154 33.1
Zm00001eb057000 Zea mays HOM05D003875 ORTHO05D004240 2.7e-13 79.3 160 31.9
RcHm_v2.0_Chr3g0451351 Rosa chinensis HOM05D003875 ORTHO05D004240 4.6e-13 78.6 160 30.0
AUR62004931 Chenopodium quinoa HOM05D003875 ORTHO05D004240 6.0e-13 78.2 148 33.8
PSO210G4992 Papaver somniferum HOM05D003875 ORTHO05D004240 6.0e-13 78.2 154 33.1
RcHm_v2.0_Chr5g0046431 Rosa chinensis HOM05D003875 ORTHO05D004240 6.0e-13 78.2 160 30.0
Glyma.19G244100 Glycine max HOM05D003875 ORTHO05D004240 7.8e-13 77.8 157 31.8
Prupe.6G341800 Prunus persica HOM05D003875 ORTHO05D004240 7.8e-13 77.8 153 33.3
Glyma.03G246600 Glycine max HOM05D003875 ORTHO05D004240 1.0e-12 77.4 160 32.5
FvH4_6g03120 Fragaria vesca HOM05D003875 ORTHO05D004240 1.3e-12 77.0 161 31.1
HanXRQChr05g0149281 Helianthus annuus HOM05D003875 ORTHO05D004240 2.3e-12 76.3 156 30.1
Medtr7g114960 Medicago truncatula HOM05D003875 ORTHO05D004240 2.3e-12 76.3 155 31.6
Rhsim05G0161300 Rhododendron simsii HOM05D003875 ORTHO05D004240 2.3e-12 76.3 164 31.1
Sed0006473 Sechium edule HOM05D003875 ORTHO05D004240 2.3e-12 76.3 163 31.3
FAN27G3504 Fragaria x ananassa HOM05D003875 ORTHO05D004240 3.0e-12 75.9 81 53.1
CSS0036957 Camellia sinensis var. sinensis HOM05D003875 ORTHO05D004240 3.9e-12 75.5 121 34.7
Carub.0006s2571 Capsella rubella HOM05D003875 ORTHO05D004240 5.1e-12 75.1 153 30.1
CsaV3_2G004210 Cucumis sativus L. HOM05D003875 ORTHO05D004240 5.1e-12 75.1 158 30.4
Psat3g007400 Pisum sativum HOM05D003875 ORTHO05D004240 5.1e-12 75.1 160 31.2
Ca_09416_v3 Cicer arietinum L. HOM05D003875 ORTHO05D004240 6.6e-12 74.7 157 33.1
Lsat_1_v5_gn_6_110001 Lactuca sativa HOM05D003875 ORTHO05D004240 8.6e-12 74.3 155 31.6
A02p38420 Brassica napus HOM05D003875 ORTHO05D004240 1.1e-11 73.9 156 28.2
BraA02t08821Z Brassica rapa HOM05D003875 ORTHO05D004240 1.1e-11 73.9 156 28.2
CANSAT54G0990 Cannabis sativa HOM05D003875 ORTHO05D004240 1.1e-11 73.9 154 30.5
MELO3C004373.2 Cucumis melo HOM05D003875 ORTHO05D004240 1.1e-11 73.9 162 32.1
BcaC03g17761 Brassica carinata HOM05D003875 ORTHO05D004240 1.5e-11 73.6 156 28.2
C02p57750 Brassica napus HOM05D003875 ORTHO05D004240 1.5e-11 73.6 156 28.2
BolC2t11847H Brassica oleracea HOM05D003875 ORTHO05D004240 1.5e-11 73.6 156 28.2
FAN02G3152 Fragaria x ananassa HOM05D003875 ORTHO05D004240 1.5e-11 73.6 160 30.6
BcaB07g34182 Brassica carinata HOM05D003875 ORTHO05D004240 2.5e-11 72.8 156 27.6
Cc02_g30450 Coffea canephora HOM05D003875 ORTHO05D004240 4.3e-11 72.0 158 29.7
Psat3g007800 Pisum sativum HOM05D003875 ORTHO05D004240 4.3e-11 72.0 160 30.0
TPR.G6987 Trifolium pratense HOM05D003875 ORTHO05D004240 7.3e-11 71.2 108 34.3
AUR62001021 Chenopodium quinoa HOM05D003875 ORTHO05D004240 9.5e-11 70.9 146 32.2
FAN09G4140 Fragaria x ananassa HOM05D003875 ORTHO05D004240 9.5e-11 70.9 159 30.8
EL10Ac4g09121 Beta vulgaris HOM05D003875 ORTHO05D004240 1.6e-10 70.1 145 32.4
Aa31LG11G8730 Aethionema arabicum HOM05D003875 ORTHO05D004240 2.1e-10 69.7 144 30.6
Sp2g20200 Schrenkiella parvula HOM05D003875 ORTHO05D004240 4.7e-10 68.6 156 26.9
Lalb_Chr06g0168041 Lupinus albus HOM05D003875 ORTHO05D004240 8.1e-10 67.8 154 31.2
RcHm_v2.0_Chr5g0046531 Rosa chinensis HOM05D003875 ORTHO05D004240 8.1e-10 67.8 130 30.0
Oeu021868.1 Olea europaea HOM05D003875 ORTHO05D004240 8.9e-09 64.3 121 31.4
Ah.06g192290 Amaranthus hybridus HOM05D003875 ORTHO05D004240 3.4e-08 62.4 144 31.9
Lalb_Chr13g0294861 Lupinus albus HOM05D002298 ORTHO05D002415 4.4e-08 62.0 130 28.5
Oeu063465.1 Olea europaea HOM05D002298 ORTHO05D002415 2.2e-07 59.7 139 24.5
SMO137G0107 Selaginella moellendorffii HOM05D002298 ORTHO05D004240 2.2e-07 59.7 152 33.6
SalBow8G3856 Salvia bowleyana HOM05D002298 ORTHO05D002415 3.8e-07 58.9 135 28.9
FAN27G3419 Fragaria x ananassa HOM05D003875 ORTHO05D004240 4.9e-07 58.5 59 50.8
arahy.Tifrunner.gnm1.ann1.9VBI51 Arachis hypogaea HOM05D003875 ORTHO05D004240 2.4e-06 56.2 141 29.8
arahy.Tifrunner.gnm1.ann1.SVL3YV Arachis hypogaea HOM05D003875 ORTHO05D004240 2.4e-06 56.2 141 29.8
Glyma.05G152500 Glycine max HOM05D002298 ORTHO05D002415 3.2e-06 55.8 138 25.4
SalBow8G4613 Salvia bowleyana HOM05D002298 ORTHO05D002415 3.2e-06 55.8 116 29.3
ECA248G3632 Erigeron canadensis HOM05D002298 ORTHO05D002415 4.2e-06 55.5 128 29.7
HanXRQChr11g0344311 Helianthus annuus HOM05D002298 ORTHO05D002415 4.2e-06 55.5 128 28.9
BcaC06g35579 Brassica carinata HOM05D002298 ORTHO05D002415 7.1e-06 54.7 143 28.0
C07p13300 Brassica napus HOM05D002298 ORTHO05D002415 7.1e-06 54.7 143 28.0
BolC7t41824H Brassica oleracea HOM05D002298 ORTHO05D002415 7.1e-06 54.7 143 28.0


User provided reference genes

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