Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0188100 Rhododendron simsii HOM05D003052 ORTHO05D003434 4.6e-146 521.2 253 100.0
Rhsim02G0188300 Rhododendron simsii HOM05D003052 ORTHO05D003434 8.5e-92 340.9 253 72.3
Actinidia13283 Actinidia chinensis HOM05D003052 ORTHO05D003434 9.5e-43 177.9 156 60.3
Nn8g39302 Nelumbo nucifera HOM05D003052 ORTHO05D003434 5.4e-38 162.2 238 42.9
CSS0049965 Camellia sinensis var. sinensis HOM05D003052 ORTHO05D003434 7.8e-37 158.3 158 57.0
CiPaw.08G015100 Carya illinoinensis HOM05D003052 ORTHO05D003434 5.0e-36 155.6 157 55.4
TAR626G1117 Trochodendron aralioides HOM05D003052 ORTHO05D003434 2.1e-34 150.2 156 52.6
Manes.03G065300 Manihot esculenta HOM05D003052 ORTHO05D003434 6.2e-34 148.7 156 50.6
Cfa021483 Carpinus fangiana HOM05D003052 ORTHO05D003434 8.9e-33 144.8 160 53.1
Cc08_g08040 Coffea canephora HOM05D003052 ORTHO05D003434 5.8e-32 142.1 157 49.7
QL12p031408 Quercus lobata HOM05D003052 ORTHO05D003434 7.5e-32 141.7 154 52.6
Duzib168G2319 Durio zibethinus HOM05D003052 ORTHO05D003434 1.7e-31 140.6 157 48.4
Ciclev10009578m.g Citrus clementina HOM05D003052 ORTHO05D003434 4.9e-31 139.0 128 59.4
Dinv30206 Davidia involucrata HOM05D003052 ORTHO05D003434 6.4e-31 138.7 132 54.5
Thecc.09G145000 Theobroma cacao HOM05D003052 ORTHO05D003434 6.4e-31 138.7 157 49.0
GSVIVG01035716001 Vitis vinifera HOM05D003052 ORTHO05D003434 8.3e-31 138.3 121 59.5
Sc09g0008800 Simmondsia chinensis HOM05D003052 ORTHO05D003434 1.4e-30 137.5 188 45.2
TWI34G0683 Tripterygium wilfordii HOM05D003052 ORTHO05D003434 1.9e-30 137.1 156 48.7
PGR044G0983 Punica granatum HOM05D003052 ORTHO05D003434 2.4e-30 136.7 194 43.3
Oeu045183.1 Olea europaea HOM05D003052 ORTHO05D003434 3.2e-30 136.3 150 52.7
Lsat_1_v5_gn_6_10760 Lactuca sativa HOM05D003052 ORTHO05D003434 7.0e-30 135.2 187 43.3
Sed0014329 Sechium edule HOM05D003052 ORTHO05D003434 1.2e-29 134.4 150 50.0
Potri.006G247300 Populus trichocarpa HOM05D003052 ORTHO05D003434 2.3e-28 130.2 162 48.8
Prupe.1G467300 Prunus persica HOM05D003052 ORTHO05D003434 2.3e-28 130.2 139 52.5
Eucgr.C02856 Eucalyptus grandis HOM05D003052 ORTHO05D003434 3.0e-28 129.8 148 48.6
CANSAT25G2597 Cannabis sativa HOM05D003052 ORTHO05D003434 3.9e-28 129.4 158 46.8
CsaV3_2G031650 Cucumis sativus L. HOM05D003052 ORTHO05D003434 8.6e-28 128.3 150 48.7
PSO782G1491 Papaver somniferum HOM05D003052 ORTHO05D003434 8.6e-28 128.3 160 48.8
MELO3C011216.2 Cucumis melo HOM05D003052 ORTHO05D003434 1.1e-27 127.9 150 48.7
VMungo0647G0026 Vigna mungo HOM05D003052 ORTHO05D003434 1.5e-27 127.5 156 50.0
Sabra06G0193500 Salix brachista HOM05D003052 ORTHO05D003434 1.9e-27 127.1 162 46.3
Nitab4.5_0000486g0140 Nicotiana tabacum HOM05D003052 ORTHO05D003434 9.5e-27 124.8 162 46.9
Aqoxy7G01888 Aquilegia oxysepala HOM05D003052 ORTHO05D003434 1.2e-26 124.4 146 47.9
AUR62024848 Chenopodium quinoa HOM05D003052 ORTHO05D003434 1.2e-26 124.4 142 52.1
AUR62032371 Chenopodium quinoa HOM05D003052 ORTHO05D003434 1.6e-26 124.0 126 55.6
Eucgr.L02133 Eucalyptus grandis HOM05D003052 ORTHO05D003434 1.6e-26 124.0 179 43.6
Eucgr.C02852 Eucalyptus grandis HOM05D003052 ORTHO05D003434 3.6e-26 122.9 165 45.5
Migut.E01491 Erythranthe guttata HOM05D003052 ORTHO05D003434 1.1e-25 121.3 156 44.9
HanXRQChr07g0191431 Helianthus annuus HOM05D003052 ORTHO05D003434 2.3e-25 120.2 154 42.9
Atru.chr7.2331 Acer truncatum HOM05D003052 ORTHO05D003434 4.0e-25 119.4 133 51.1
PSO063G7455 Papaver somniferum HOM05D003052 ORTHO05D003434 4.0e-25 119.4 160 46.9
Lalb_Chr24g0402301 Lupinus albus HOM05D003052 ORTHO05D003434 5.2e-25 119.0 137 52.6
Glyma.17G205000 Glycine max HOM05D003052 ORTHO05D003434 6.8e-25 118.6 140 50.7
CAN.G504.98 Capsicum annuum HOM05D003052 ORTHO05D003434 8.9e-25 118.2 157 45.2
FvH4_2g30090 Fragaria vesca HOM05D003052 ORTHO05D003434 2.0e-24 117.1 156 44.2
Peaxi162Scf00632g00419 Petunia axillaris HOM05D003052 ORTHO05D003434 2.0e-24 117.1 126 51.6
Lj8A611T46 Lonicera japonica HOM05D003052 ORTHO05D003434 3.4e-24 116.3 165 41.8
CDE07G1319 Ceratophyllum demersum HOM05D003052 ORTHO05D003434 7.5e-24 115.2 158 41.1
DCAR_007683 Daucus carota HOM05D003052 ORTHO05D003434 1.3e-23 114.4 158 40.5
TPR.G20102 Trifolium pratense HOM05D003052 ORTHO05D003434 2.9e-23 113.2 134 50.0
Gorai.013G238500 Gossypium raimondii HOM05D003052 ORTHO05D003434 3.7e-23 112.8 161 42.9
Ca_12912_v3 Cicer arietinum L. HOM05D003052 ORTHO05D003434 4.9e-23 112.5 133 48.9
ClCG08G012930 Citrullus lanatus HOM05D003052 ORTHO05D003434 4.9e-23 112.5 242 35.1
PGSC0003DMG400001278 Solanum tuberosum HOM05D003052 ORTHO05D003434 6.4e-23 112.1 148 43.9
Medtr1g011510 Medicago truncatula HOM05D003052 ORTHO05D003434 1.4e-22 110.9 133 47.4
BcaC09g52049 Brassica carinata HOM05D003052 ORTHO05D003434 1.9e-22 110.5 118 50.8
Cpa.g.sc91.15 Carica papaya HOM05D003052 ORTHO05D003434 1.9e-22 110.5 122 52.5
ECA233G5297 Erigeron canadensis HOM05D000128 ORTHO05D000059 1.9e-22 110.5 140 47.1
THA.LOC104803819 Tarenaya hassleriana HOM05D003052 ORTHO05D003434 1.9e-22 110.5 145 45.5
MSTRG.1644 Avicennia marina HOM05D003052 ORTHO05D003434 4.1e-22 109.4 157 44.6
Gohir.D13G209400 Gossypium hirsutum HOM05D003052 ORTHO05D003434 4.1e-22 109.4 137 46.7
Phvul.001G055300 Phaseolus vulgaris HOM05D003052 ORTHO05D003434 1.6e-21 107.5 133 48.1
AL7G19180 Arabidopsis lyrata HOM05D003052 ORTHO05D003434 2.1e-21 107.1 102 54.9
Haze_21617 Corylus avellana HOM05D003052 ORTHO05D003434 3.5e-21 106.3 125 47.2
RcHm_v2.0_Chr6g0312831 Rosa chinensis HOM05D003052 ORTHO05D003434 3.5e-21 106.3 138 46.4
FAN20G2251 Fragaria x ananassa HOM05D003052 ORTHO05D003434 6.0e-21 105.5 159 40.9
AT4G32590 Arabidopsis thaliana HOM05D003052 ORTHO05D003434 1.3e-20 104.4 101 53.5
Carub.0007s0797 Capsella rubella HOM05D003052 ORTHO05D003434 1.7e-20 104.0 134 44.8
Sp7g30360 Schrenkiella parvula HOM05D003052 ORTHO05D003434 2.3e-20 103.6 102 52.0
CARHR240560 Cardamine hirsuta HOM05D003052 ORTHO05D003434 5.1e-20 102.4 111 50.5
Os05g0555300 Oryza sativa ssp. japonica HOM05D003052 ORTHO05D003434 6.6e-20 102.1 141 41.1
ATR0071G013 Amborella trichopoda HOM05D003052 ORTHO05D003434 8.6e-20 101.7 114 50.9
MD15G1116000 Malus domestica HOM05D003052 ORTHO05D003434 1.1e-19 101.3 115 45.2
C01p06370 Brassica napus HOM05D003052 ORTHO05D003434 1.5e-19 100.9 102 52.0
BolC1t00633H Brassica oleracea HOM05D003052 ORTHO05D003434 1.5e-19 100.9 102 52.0
EL10Ac2g02546 Beta vulgaris HOM05D003052 ORTHO05D003434 1.9e-19 100.5 102 54.9
A01p05800 Brassica napus HOM05D003052 ORTHO05D003434 2.5e-19 100.1 102 51.0
BraA01t00549Z Brassica rapa HOM05D003052 ORTHO05D003434 2.5e-19 100.1 102 51.0
Gohir.A13G204100 Gossypium hirsutum HOM05D003052 ORTHO05D003434 3.3e-19 99.8 139 42.4
Lj5g0015290 Lotus japonicus HOM05D003052 ORTHO05D003434 5.6e-19 99.0 140 47.1
Ah.12g063470 Amaranthus hybridus HOM05D003052 ORTHO05D003434 7.3e-19 98.6 132 41.7
unitig_578.g16602 Utricularia gibba HOM05D003052 ORTHO05D003434 7.3e-19 98.6 160 45.0
Zm00001eb295180 Zea mays HOM05D003052 ORTHO05D003434 7.3e-19 98.6 100 51.0
vmacro11122 Vaccinium macrocarpon HOM05D003052 ORTHO05D003434 9.5e-19 98.2 176 40.9
Eucgr.C02841 Eucalyptus grandis HOM05D003052 ORTHO05D003434 1.4e-17 94.4 125 44.8
Thhalv10026415m.g Eutrema salsugineum HOM05D003052 ORTHO05D003434 1.2e-16 91.3 93 51.6
FAN27G2734 Fragaria x ananassa HOM05D003052 ORTHO05D003434 5.8e-16 89.0 132 40.2
arahy.Tifrunner.gnm1.ann1.MC48K1 Arachis hypogaea HOM05D003052 ORTHO05D003434 7.6e-16 88.6 101 47.5
FAN15G2025 Fragaria x ananassa HOM05D003052 ORTHO05D003434 7.6e-16 88.6 133 42.1
arahy.Tifrunner.gnm1.ann1.R0XIBX Arachis hypogaea HOM05D003052 ORTHO05D003434 9.9e-16 88.2 108 49.1
FAN24G3185 Fragaria x ananassa HOM05D003052 ORTHO05D003434 1.1e-14 84.7 119 41.2
SGA_v2.0_scaffold187G40270 Striga asiatica HOM05D003052 ORTHO05D003434 3.2e-14 83.2 110 44.5
Nitab4.5_0004637g0010 Nicotiana tabacum HOM05D003052 ORTHO05D003434 1.2e-13 81.3 137 36.5
Hund31144 Selenicereus undatus HOM05D003052 ORTHO05D003434 1.0e-12 78.2 89 50.6
Hund31145 Selenicereus undatus HOM05D003052 ORTHO05D003434 1.0e-12 78.2 89 50.6
Aa31LG2G16910 Aethionema arabicum HOM05D003052 ORTHO05D003434 8.7e-12 75.1 94 43.6
AagrBONN_evm.TU.Sc2ySwM_362.2080 Anthoceros agrestis HOM05D003052 ORTHO05D003434 2.5e-11 73.6 120 40.8
Haze_21631 Corylus avellana HOM05D000151 ORTHO05D000074 2.1e-10 70.5 70 54.3
Sopen11g019060 Solanum pennellii HOM05D000002 ORTHO05D000001 2.1e-10 70.5 48 64.6
Solyc08g022140.1 Solanum lycopersicum HOM05D003052 ORTHO05D003434 2.8e-10 70.1 82 42.7
Psat6g030720 Pisum sativum HOM05D003052 ORTHO05D003434 4.7e-10 69.3 137 38.0
Mapoly0075s0083 Marchantia polymorpha HOM05D003052 ORTHO05D003434 4.0e-09 66.2 135 34.8
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 5.8e-08 62.4 142 34.5
Zm00001eb321670 Zea mays HOM05D003052 ORTHO05D003434 7.6e-08 62.0 108 34.3
COL.COLO4_24048 Corchorus olitorius HOM05D003052 ORTHO05D003434 9.9e-08 61.6 38 65.8
SEGI_20700 Sequoiadendron giganteum HOM05D003052 ORTHO05D003434 1.7e-07 60.8 70 48.6
EL10Ac9g22045 Beta vulgaris HOM05D003052 ORTHO05D003434 2.2e-07 60.5 115 37.4
Migut.I00927 Erythranthe guttata HOM05D003052 ORTHO05D003434 6.4e-07 58.9 158 31.6
vmacro18873 Vaccinium macrocarpon HOM05D003052 ORTHO05D003434 6.4e-07 58.9 111 36.9
RcHm_v2.0_Chr2g0139561 Rosa chinensis HOM05D003052 ORTHO05D003434 8.4e-07 58.5 123 35.8
Sabra01G0153600 Salix brachista HOM05D003052 ORTHO05D003434 8.4e-07 58.5 161 33.5
TPR.G37231 Trifolium pratense HOM05D003052 ORTHO05D003434 8.4e-07 58.5 133 35.3
Glyma.14G128500 Glycine max HOM05D003052 ORTHO05D003434 1.9e-06 57.4 67 49.3
Lalb_Chr14g0373131 Lupinus albus HOM05D003052 ORTHO05D003434 1.9e-06 57.4 133 32.3
CSS0034447 Camellia sinensis var. sinensis HOM05D003052 ORTHO05D003434 2.4e-06 57.0 116 31.9
MELO3C024264.2 Cucumis melo HOM05D003052 ORTHO05D003434 2.4e-06 57.0 131 34.4
Glyma.15G018000 Glycine max HOM05D003052 ORTHO05D003434 2.4e-06 57.0 168 30.4
Potri.001G186800 Populus trichocarpa HOM05D003052 ORTHO05D003434 2.4e-06 57.0 137 32.8
SMO146G0398 Selaginella moellendorffii HOM05D003052 ORTHO05D003434 2.4e-06 57.0 88 36.4
CANSAT56G2298 Cannabis sativa HOM05D003052 ORTHO05D003434 3.2e-06 56.6 126 33.3
FAN02G4426 Fragaria x ananassa HOM05D003052 ORTHO05D003434 3.2e-06 56.6 124 35.5
AUR62031872 Chenopodium quinoa HOM05D003052 ORTHO05D003434 4.2e-06 56.2 112 35.7
ClCG09G001820 Citrullus lanatus HOM05D003052 ORTHO05D003434 4.2e-06 56.2 130 36.2
CsaV3_7G033530 Cucumis sativus L. HOM05D003052 ORTHO05D003434 4.2e-06 56.2 130 34.6
DCAR_016201 Daucus carota HOM05D003052 ORTHO05D003434 4.2e-06 56.2 114 33.3
Dinv30462 Davidia involucrata HOM05D003052 ORTHO05D003434 4.2e-06 56.2 130 30.8
MBI04_g02614_MAGBIO Magnolia biondii HOM05D003052 ORTHO05D003434 4.2e-06 56.2 121 33.9
Os07g0489800 Oryza sativa ssp. japonica HOM05D003052 ORTHO05D003434 4.2e-06 56.2 111 35.1
MSTRG.11041 Avicennia marina HOM05D003052 ORTHO05D003434 5.4e-06 55.8 120 34.2
Duzib192G0284 Durio zibethinus HOM05D003052 ORTHO05D003434 5.4e-06 55.8 121 33.9
Eucgr.C02845 Eucalyptus grandis HOM05D003052 ORTHO05D003434 5.4e-06 55.8 95 40.0
FvH4_6g31980 Fragaria vesca HOM05D003052 ORTHO05D003434 5.4e-06 55.8 140 31.4
FAN05G3438 Fragaria x ananassa HOM05D003052 ORTHO05D003434 5.4e-06 55.8 124 35.5
Haze_16336 Corylus avellana HOM05D003052 ORTHO05D003434 7.1e-06 55.5 107 34.6
FAN14G2886 Fragaria x ananassa HOM05D003052 ORTHO05D003434 7.1e-06 55.5 136 34.6
Sed0003664 Sechium edule HOM05D003052 ORTHO05D003434 7.1e-06 55.5 108 38.0
CSS0008444 Camellia sinensis var. sinensis HOM05D003052 ORTHO05D003434 9.3e-06 55.1 111 35.1
CSS0044455 Camellia sinensis var. sinensis HOM05D003052 ORTHO05D003434 9.3e-06 55.1 111 35.1
Thhalv10021523m.g Eutrema salsugineum HOM05D003052 ORTHO05D003434 9.3e-06 55.1 138 31.2


User provided reference genes

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