Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0185600 Rhododendron simsii HOM05D000413 ORTHO05D000292 3.3e-43 177.9 87 100.0
Rhsim02G0185200 Rhododendron simsii HOM05D000413 ORTHO05D000292 6.0e-29 130.6 68 92.6
vmacro11107 Vaccinium macrocarpon HOM05D000413 ORTHO05D000292 7.3e-27 123.6 68 86.8
Actinidia13298 Actinidia chinensis HOM05D000413 ORTHO05D000292 1.3e-23 112.8 68 80.9
Hma1.2p1_0140F.1_g063810 Hydrangea macrophylla HOM05D000413 ORTHO05D000292 2.7e-21 105.1 68 72.1
Lsat_1_v5_gn_6_10961 Lactuca sativa HOM05D000413 ORTHO05D000292 3.5e-21 104.8 68 70.6
Dinv14203 Davidia involucrata HOM05D000413 ORTHO05D000292 1.3e-20 102.8 68 73.5
HanXRQChr10g0313011 Helianthus annuus HOM05D000413 ORTHO05D000292 1.3e-20 102.8 81 61.7
GSVIVG01035748001 Vitis vinifera HOM05D000413 ORTHO05D000292 3.0e-20 101.7 68 70.6
Nitab4.5_0001965g0020 Nicotiana tabacum HOM05D000413 ORTHO05D000292 8.6e-20 100.1 69 72.5
Nitab4.5_0001196g0070 Nicotiana tabacum HOM05D000413 ORTHO05D000292 1.5e-19 99.4 69 71.0
Duzib168G0996 Durio zibethinus HOM05D000413 ORTHO05D000292 2.5e-19 98.6 67 70.1
PGSC0003DMG400025678 Solanum tuberosum HOM05D000413 ORTHO05D000292 4.3e-19 97.8 78 57.7
Peaxi162Scf00827g00011 Petunia axillaris HOM05D000413 ORTHO05D000292 5.6e-19 97.4 68 67.6
Nitab4.5_0000250g0080 Nicotiana tabacum HOM05D000413 ORTHO05D000292 1.2e-18 96.3 78 64.1
Cc08_g08150 Coffea canephora HOM05D000413 ORTHO05D000292 1.6e-18 95.9 68 64.7
Manes.16G069300 Manihot esculenta HOM05D000413 ORTHO05D000292 1.6e-18 95.9 73 64.4
TAR383G0020 Trochodendron aralioides HOM05D000413 ORTHO05D000292 1.6e-18 95.9 69 69.6
Sopen02g013200 Solanum pennellii HOM05D000413 ORTHO05D000292 2.1e-18 95.5 68 66.2
PGSC0003DMG400014505 Solanum tuberosum HOM05D000413 ORTHO05D000292 2.1e-18 95.5 68 67.6
PGR044G2388 Punica granatum HOM05D000413 ORTHO05D000292 3.6e-18 94.7 68 64.7
Sopen08g021920 Solanum pennellii HOM05D000413 ORTHO05D000292 3.6e-18 94.7 68 66.2
Nitab4.5_0011546g0030 Nicotiana tabacum HOM05D000413 ORTHO05D000292 4.7e-18 94.4 68 66.2
Thecc.09G037600 Theobroma cacao HOM05D000413 ORTHO05D000292 4.7e-18 94.4 67 67.2
Ciclev10007893m.g Citrus clementina HOM05D000413 ORTHO05D000292 8.1e-18 93.6 68 69.1
Oeu033994.1 Olea europaea HOM05D000413 ORTHO05D000292 1.1e-17 93.2 82 54.9
Oeu033996.1 Olea europaea HOM05D000413 ORTHO05D000292 1.1e-17 93.2 82 54.9
COL.COLO4_18736 Corchorus olitorius HOM05D000413 ORTHO05D000292 1.8e-17 92.4 67 67.2
CANSAT25G0534 Cannabis sativa HOM05D000413 ORTHO05D000292 2.4e-17 92.0 71 60.6
Solyc08g068000.3 Solanum lycopersicum HOM05D000413 ORTHO05D000292 3.1e-17 91.7 68 64.7
CAN.G366.5 Capsicum annuum HOM05D000413 ORTHO05D000292 4.0e-17 91.3 68 63.2
Nn8g39223 Nelumbo nucifera HOM05D000413 ORTHO05D000292 4.0e-17 91.3 79 55.7
SalBow4G0397 Salvia bowleyana HOM05D000413 ORTHO05D000292 4.0e-17 91.3 70 64.3
QL12p031015 Quercus lobata HOM05D000413 ORTHO05D000292 5.2e-17 90.9 68 66.2
Gohir.A13G185750 Gossypium hirsutum HOM05D000413 ORTHO05D000292 8.9e-17 90.1 67 64.2
Lj7A710G56 Lonicera japonica HOM05D000413 ORTHO05D000292 8.9e-17 90.1 84 54.8
Manes.03G064216 Manihot esculenta HOM05D000413 ORTHO05D000292 8.9e-17 90.1 70 64.3
Migut.A00258 Erythranthe guttata HOM05D000413 ORTHO05D000292 1.2e-16 89.7 69 63.8
DCAR_001493 Daucus carota HOM05D000413 ORTHO05D000292 1.5e-16 89.4 68 64.7
Gohir.D13G192300 Gossypium hirsutum HOM05D000413 ORTHO05D000292 1.5e-16 89.4 67 64.2
Gorai.013G218200 Gossypium raimondii HOM05D000413 ORTHO05D000292 1.5e-16 89.4 67 64.2
MD15G1113600 Malus domestica HOM05D000413 ORTHO05D000292 1.5e-16 89.4 67 67.2
Nn2g11783 Nelumbo nucifera HOM05D000413 ORTHO05D000292 2.0e-16 89.0 69 62.3
Gohir.A07G024500 Gossypium hirsutum HOM05D000413 ORTHO05D000292 2.6e-16 88.6 67 62.7
Nitab4.5_0001196g0080 Nicotiana tabacum HOM05D000413 ORTHO05D000292 2.6e-16 88.6 73 61.6
Peaxi162Scf00105g00099 Petunia axillaris HOM05D000413 ORTHO05D000292 2.6e-16 88.6 68 66.2
Gorai.001G029400 Gossypium raimondii HOM05D000413 ORTHO05D000292 3.4e-16 88.2 67 62.7
MD08G1134700 Malus domestica HOM05D000413 ORTHO05D000292 3.4e-16 88.2 66 68.2
Nitab4.5_0001965g0050 Nicotiana tabacum HOM05D000413 ORTHO05D000292 3.4e-16 88.2 73 61.6
Oeu014500.1 Olea europaea HOM05D000413 ORTHO05D000292 3.4e-16 88.2 82 53.7
ClCG05G017310 Citrullus lanatus HOM05D000413 ORTHO05D000292 4.4e-16 87.8 67 59.7
Lsat_1_v5_gn_3_27781 Lactuca sativa HOM05D000413 ORTHO05D000292 4.4e-16 87.8 86 51.2
Sabra18G0036100 Salix brachista HOM05D000413 ORTHO05D000292 4.4e-16 87.8 67 67.2
Gohir.D07G028100 Gossypium hirsutum HOM05D000413 ORTHO05D000292 7.6e-16 87.0 67 61.2
Prupe.1G464600 Prunus persica HOM05D000413 ORTHO05D000292 7.6e-16 87.0 67 65.7
Potri.018G035500 Populus trichocarpa HOM05D000413 ORTHO05D000292 1.3e-15 86.3 67 65.7
Solyc01g010080.3 Solanum lycopersicum HOM05D000413 ORTHO05D000292 1.3e-15 86.3 66 66.7
Sopen01g005630 Solanum pennellii HOM05D000413 ORTHO05D000292 1.3e-15 86.3 66 66.7
Potri.006G245000 Populus trichocarpa HOM05D000413 ORTHO05D000292 1.7e-15 85.9 68 64.7
FAN15G1491 Fragaria x ananassa HOM05D000413 ORTHO05D000292 2.9e-15 85.1 67 64.2
FAN24G1239 Fragaria x ananassa HOM05D000413 ORTHO05D000292 2.9e-15 85.1 67 64.2
FAN27G1989 Fragaria x ananassa HOM05D000413 ORTHO05D000292 2.9e-15 85.1 67 64.2
PSO063G1043 Papaver somniferum HOM05D000413 ORTHO05D000292 2.9e-15 85.1 83 54.2
MBI04_g10459_MAGBIO Magnolia biondii HOM05D000413 ORTHO05D000292 3.8e-15 84.7 69 60.9
MSTRG.25886 Avicennia marina HOM05D000413 ORTHO05D000292 6.4e-15 84.0 67 64.2
Potri.012G124944 Populus trichocarpa HOM05D000413 ORTHO05D000292 6.4e-15 84.0 68 63.2
Sed0025949 Sechium edule HOM05D000413 ORTHO05D000292 6.4e-15 84.0 68 55.9
FvH4_2g30280 Fragaria vesca HOM05D000413 ORTHO05D000292 8.4e-15 83.6 67 62.7
FAN20G0131 Fragaria x ananassa HOM05D000413 ORTHO05D000292 1.4e-14 82.8 67 61.2
PSO675G7255 Papaver somniferum HOM05D000413 ORTHO05D000292 1.9e-14 82.4 70 57.1
Aqoxy7G01750 Aquilegia oxysepala HOM05D000413 ORTHO05D000292 4.2e-14 81.3 69 56.5
Phvul.009G099300 Phaseolus vulgaris HOM05D000413 ORTHO05D000292 4.2e-14 81.3 76 53.9
PSO782G0412 Papaver somniferum HOM05D000413 ORTHO05D000292 7.1e-14 80.5 68 58.8
DCAR_006258 Daucus carota HOM05D000413 ORTHO05D000292 1.2e-13 79.7 68 60.3
Lj1g0022933 Lotus japonicus HOM05D000413 ORTHO05D000292 1.2e-13 79.7 67 59.7
Carub.0007s0789 Capsella rubella HOM05D000413 ORTHO05D000292 1.6e-13 79.3 69 59.4
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 1.6e-13 79.3 67 55.2
Glyma.04G073476 Glycine max HOM05D000413 ORTHO05D000292 2.7e-13 78.6 76 55.3
ECA246G1246 Erigeron canadensis HOM05D000413 ORTHO05D000292 3.5e-13 78.2 68 57.4
PSO063G0708 Papaver somniferum HOM05D000413 ORTHO05D000292 3.5e-13 78.2 68 57.4
PSO170G3905 Papaver somniferum HOM05D000413 ORTHO05D000292 3.5e-13 78.2 82 51.2
BcaNung04521 Brassica carinata HOM05D000413 ORTHO05D000292 6.0e-13 77.4 69 58.0
A01p05700 Brassica napus HOM05D000413 ORTHO05D000292 6.0e-13 77.4 68 55.9
C01p06280 Brassica napus HOM05D000413 ORTHO05D000292 6.0e-13 77.4 68 55.9
BraA01t00540Z Brassica rapa HOM05D000413 ORTHO05D000292 6.0e-13 77.4 68 55.9
BcaC09g52058 Brassica carinata HOM05D000413 ORTHO05D000292 7.8e-13 77.0 68 55.9
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 1.0e-12 76.6 83 54.2
AL7G19110 Arabidopsis lyrata HOM05D000413 ORTHO05D000292 1.3e-12 76.3 70 55.7
AT4G32650 Arabidopsis thaliana HOM05D000413 ORTHO05D000292 1.3e-12 76.3 70 57.1
CDE06G2235 Ceratophyllum demersum HOM05D000413 ORTHO05D000292 2.3e-12 75.5 68 54.4
THA.LOC104803773 Tarenaya hassleriana HOM05D000413 ORTHO05D000292 2.3e-12 75.5 85 49.4
BolC1t00626H Brassica oleracea HOM05D000413 ORTHO05D000292 3.0e-12 75.1 68 54.4
unitig_0.g2808 Utricularia gibba HOM05D000413 ORTHO05D000292 3.9e-12 74.7 70 54.3
arahy.Tifrunner.gnm1.ann1.X7SBSX Arachis hypogaea HOM05D000413 ORTHO05D000292 5.1e-12 74.3 65 56.9
BcaNung03597 Brassica carinata HOM05D000413 ORTHO05D000292 5.1e-12 74.3 69 56.5
Lalb_Chr08g0243711 Lupinus albus HOM05D000413 ORTHO05D000292 5.1e-12 74.3 76 51.3
Medtr3g108320 Medicago truncatula HOM05D000413 ORTHO05D000292 5.1e-12 74.3 67 59.7
C07p59280 Brassica napus HOM05D000413 ORTHO05D000292 6.6e-12 73.9 69 56.5
BolC7t46374H Brassica oleracea HOM05D000413 ORTHO05D000292 6.6e-12 73.9 69 56.5
CARHR240620 Cardamine hirsuta HOM05D000413 ORTHO05D000292 1.5e-11 72.8 68 55.9
Thhalv10024632m.g Eutrema salsugineum HOM05D000413 ORTHO05D000292 1.5e-11 72.8 69 56.5
HanXRQChr17g0539411 Helianthus annuus HOM05D000413 ORTHO05D000292 1.5e-11 72.8 66 56.1
arahy.Tifrunner.gnm1.ann1.06EXH6 Arachis hypogaea HOM05D000413 ORTHO05D000292 1.9e-11 72.4 65 53.8
CANSAT25G3408 Cannabis sativa HOM05D000413 ORTHO05D000292 1.9e-11 72.4 67 55.2
TWI34G1260 Tripterygium wilfordii HOM05D000413 ORTHO05D000292 3.3e-11 71.6 68 55.9
Aa31LG2G17000 Aethionema arabicum HOM05D000413 ORTHO05D000292 9.6e-11 70.1 67 53.7
AUR62016037 Chenopodium quinoa HOM05D000413 ORTHO05D000292 2.4e-09 65.5 74 40.5
SEGI_21818 Sequoiadendron giganteum HOM05D000413 ORTHO05D000292 6.9e-09 63.9 72 40.3
Sp7g30420 Schrenkiella parvula HOM05D000413 ORTHO05D000292 2.0e-08 62.4 47 63.8
Os06g0254200 Oryza sativa ssp. japonica HOM05D000413 ORTHO05D000292 9.9e-08 60.1 70 42.9
Zm00001eb361550 Zea mays HOM05D000413 ORTHO05D000292 1.7e-07 59.3 73 39.7
AUR62021243 Chenopodium quinoa HOM05D000413 ORTHO05D000292 4.9e-07 57.8 74 37.8
SEGI_06371 Sequoiadendron giganteum HOM05D000413 ORTHO05D000292 4.9e-07 57.8 67 40.3
Lj3g0022335 Lotus japonicus HOM05D000413 ORTHO05D000292 8.4e-07 57.0 80 38.8
Pp3c7_22600 Physcomitrium patens HOM05D000413 ORTHO05D000292 1.4e-06 56.2 69 36.2
EL10Ac8g19717 Beta vulgaris HOM05D000413 ORTHO05D000292 1.9e-06 55.8 67 41.8
AUR62030205 Chenopodium quinoa HOM05D000413 ORTHO05D000292 1.9e-06 55.8 67 41.8
Sc23g0006930 Simmondsia chinensis HOM05D000413 ORTHO05D000292 1.9e-06 55.8 50 48.0
AUR62039778 Chenopodium quinoa HOM05D000413 ORTHO05D000292 2.4e-06 55.5 67 41.8
Ah.12g063840 Amaranthus hybridus HOM05D000413 ORTHO05D000292 3.2e-06 55.1 69 34.8
SEGI_09396 Sequoiadendron giganteum HOM05D000413 ORTHO05D000292 3.2e-06 55.1 49 49.0
Gohir.A10G040400 Gossypium hirsutum HOM05D000413 ORTHO05D000292 4.2e-06 54.7 81 33.3
Medtr8g446430 Medicago truncatula HOM05D000413 ORTHO05D000292 7.1e-06 53.9 80 41.2
Atru.chr10.1240 Acer truncatum HOM05D000413 ORTHO05D000292 9.3e-06 53.5 67 38.8
PGR042G1819 Punica granatum HOM05D000413 ORTHO05D000292 9.3e-06 53.5 76 36.8
VMungo1215G0278 Vigna mungo HOM05D000413 ORTHO05D000292 9.3e-06 53.5 69 39.1


User provided reference genes

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